Clone Sequence Records
BO14564.5prime Sequence
482 bp (481 high quality bases) assembled on 2006-05-29
> BO14564.5prime
GAAGTTATCAGTCGACATGCTAATACAGGTTTTAGTGTTTTTTTTACTTT
ATCGAAATACTTACGAAGATTGTAATCATAATCATTCGGCTGTCGAAGAT
CATTACGATTGTGGATGTTGTCCGGGCATAAGTAACAACAATGGCCAGGT
GGTTGGGTTCCATTGCCATAAAGATGACCAAAACTCAATTTTAAGATTTG
CATCGGATGAGGAAAGTGCGTTTGCTGAATGTGTGCCAAACTGTTTTGAG
ATAAAATATCCCATTCAGGAATACTGCTGTTTCTGGTCACCGAAGCTGGG
CTGTACGATACTAGTCAATGAAAAGTATTTCAGCAATAAAGACTTGTGCA
ATAACTGCAAGTATTTTTGCCAAAGAACTACAGGAGATGGGAGGAGCTCT
AGTTATCCACAGAAACTTATCTTGCTACTCTCATTACTGCTGATCGGTTG
CAATTACTTTCAGAACGCAAGCTTTCTAGACC
BO14564.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32219-PA | 453 | CG32219-RA | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:15:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32219-RA | 997 | CG32219-RA | 64..513 | 17..466 | 2250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:15:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19950507..19950715 | 466..258 | 1045 | 100 | Minus |
3L | 28110227 | 3L | 19950766..19950936 | 257..87 | 855 | 100 | Minus |
3L | 28110227 | 3L | 19951003..19951072 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 08:15:15 has no hits.
BO14564.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:50 Download gff for
BO14564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-PA | 1..453 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:15 Download gff for
BO14564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-PA | 1..453 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:47:16 Download gff for
BO14564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-RA | 62..520 | 14..474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:18:50 Download gff for
BO14564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-RA | 62..520 | 14..474 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:18:50 Download gff for
BO14564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19950500..19950715 | 258..474 | 98 | <- | Minus |
3L | 19950766..19950936 | 87..257 | 100 | <- | Minus |
3L | 19951003..19951074 | 14..86 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:47:16 Download gff for
BO14564.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19943600..19943815 | 258..474 | 98 | <- | Minus |
arm_3L | 19943866..19944036 | 87..257 | 100 | <- | Minus |
arm_3L | 19944103..19944174 | 14..86 | 98 | | Minus |
BO14564.complete Sequence
484 bp assembled on 2006-10-11
GenBank Submission: FJ633181
> BO14564.complete
GAAGTTATCAGTCGACATGCTAATACAGGTTTTAGTGTTTTTTTTACTTT
ATCGAAATACTTACGAAGATTGTAATCATAATCATTCGGCTGTCGAAGAT
CATTACGATTGTGGATGTTGTCCGGGCATAAGTAACAACAATGGCCAGGT
GGTTGGGTTCCATTGCCATAAAGATGACCAAAACTCAATTTTAAGATTTG
CATCGGATGAGGAAAGTGCGTTTGCTGAATGTGTGCCAAACTGTTTTGAG
ATAAAATATCCCATTCAGGAATACTGCTGTTTCTGGTCACCGAAGCTGGG
CTGTACGATACTAGTCAATGAAAAGTATTTCAGCAATAAAGACTTGTGCA
ATAACTGCAAGTATTTTTGCCAAAGAACTACAGGAGATGGGAGGAGCTCT
AGTTATCCACAGAAACTTATCTTGCTACTCTCATTACTGCTGATCGGTTG
CAATTACTTTCAGAACGCAAGCTTTCTAGACCAT
BO14564.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32219-RA | 453 | CG32219-PA | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32219-RA | 997 | CG32219-RA | 64..513 | 17..466 | 2250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19950507..19950715 | 466..258 | 1045 | 100 | Minus |
3L | 28110227 | 3L | 19950766..19950936 | 257..87 | 855 | 100 | Minus |
3L | 28110227 | 3L | 19951003..19951072 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:34:23 has no hits.
BO14564.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:26 Download gff for
BO14564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-RA | 1..453 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:34 Download gff for
BO14564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-RA | 62..520 | 14..474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:05 Download gff for
BO14564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-RA | 64..513 | 17..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:26 Download gff for
BO14564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-RA | 62..520 | 14..474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:34 Download gff for
BO14564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32219-RA | 64..513 | 17..468 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:34 Download gff for
BO14564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19950505..19950715 | 258..468 | 99 | <- | Minus |
3L | 19950766..19950936 | 87..257 | 100 | <- | Minus |
3L | 19951003..19951072 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:05 Download gff for
BO14564.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19943605..19943815 | 258..468 | 99 | <- | Minus |
arm_3L | 19943866..19944036 | 87..257 | 100 | <- | Minus |
arm_3L | 19944103..19944172 | 17..86 | 100 | | Minus |
BO14564.pep Sequence
Translation from 16 to 484
> BO14564.pep
MLIQVLVFFLLYRNTYEDCNHNHSAVEDHYDCGCCPGISNNNGQVVGFHC
HKDDQNSILRFASDEESAFAECVPNCFEIKYPIQEYCCFWSPKLGCTILV
NEKYFSNKDLCNNCKYFCQRTTGDGRSSSYPQKLILLLSLLLIGCNYFQN
ASFLDH
BO14564.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32219-PA | 150 | CG32219-PA | 1..150 | 1..150 | 850 | 100 | Plus |
CG34258-PA | 165 | CG34258-PA | 59..164 | 48..143 | 177 | 34.9 | Plus |
CG33710-PA | 162 | CG33710-PA | 45..131 | 32..118 | 168 | 35.2 | Plus |