Clone BO14564 Report

Search the DGRC for BO14564

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:145
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG32219-RA
Protein status:BO14564.pep: validated full length
Sequenced Size:484

Clone Sequence Records

BO14564.5prime Sequence

482 bp (481 high quality bases) assembled on 2006-05-29

> BO14564.5prime
GAAGTTATCAGTCGACATGCTAATACAGGTTTTAGTGTTTTTTTTACTTT
ATCGAAATACTTACGAAGATTGTAATCATAATCATTCGGCTGTCGAAGAT
CATTACGATTGTGGATGTTGTCCGGGCATAAGTAACAACAATGGCCAGGT
GGTTGGGTTCCATTGCCATAAAGATGACCAAAACTCAATTTTAAGATTTG
CATCGGATGAGGAAAGTGCGTTTGCTGAATGTGTGCCAAACTGTTTTGAG
ATAAAATATCCCATTCAGGAATACTGCTGTTTCTGGTCACCGAAGCTGGG
CTGTACGATACTAGTCAATGAAAAGTATTTCAGCAATAAAGACTTGTGCA
ATAACTGCAAGTATTTTTGCCAAAGAACTACAGGAGATGGGAGGAGCTCT
AGTTATCCACAGAAACTTATCTTGCTACTCTCATTACTGCTGATCGGTTG
CAATTACTTTCAGAACGCAAGCTTTCTAGACC

BO14564.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32219-PA 453 CG32219-RA 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG32219-RA 997 CG32219-RA 64..513 17..466 2250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19950507..19950715 466..258 1045 100 Minus
3L 28110227 3L 19950766..19950936 257..87 855 100 Minus
3L 28110227 3L 19951003..19951072 86..17 350 100 Minus
Blast to na_te.dros performed on 2015-02-02 08:15:15 has no hits.

BO14564.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:31:50 Download gff for BO14564.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32219-PA 1..453 17..470 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:15 Download gff for BO14564.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32219-PA 1..453 17..470 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:47:16 Download gff for BO14564.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32219-RA 62..520 14..474 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:18:50 Download gff for BO14564.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32219-RA 62..520 14..474 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:18:50 Download gff for BO14564.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19950500..19950715 258..474 98 <- Minus
3L 19950766..19950936 87..257 100 <- Minus
3L 19951003..19951074 14..86 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:47:16 Download gff for BO14564.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19943600..19943815 258..474 98 <- Minus
arm_3L 19943866..19944036 87..257 100 <- Minus
arm_3L 19944103..19944174 14..86 98   Minus

BO14564.complete Sequence

484 bp assembled on 2006-10-11

GenBank Submission: FJ633181

> BO14564.complete
GAAGTTATCAGTCGACATGCTAATACAGGTTTTAGTGTTTTTTTTACTTT
ATCGAAATACTTACGAAGATTGTAATCATAATCATTCGGCTGTCGAAGAT
CATTACGATTGTGGATGTTGTCCGGGCATAAGTAACAACAATGGCCAGGT
GGTTGGGTTCCATTGCCATAAAGATGACCAAAACTCAATTTTAAGATTTG
CATCGGATGAGGAAAGTGCGTTTGCTGAATGTGTGCCAAACTGTTTTGAG
ATAAAATATCCCATTCAGGAATACTGCTGTTTCTGGTCACCGAAGCTGGG
CTGTACGATACTAGTCAATGAAAAGTATTTCAGCAATAAAGACTTGTGCA
ATAACTGCAAGTATTTTTGCCAAAGAACTACAGGAGATGGGAGGAGCTCT
AGTTATCCACAGAAACTTATCTTGCTACTCTCATTACTGCTGATCGGTTG
CAATTACTTTCAGAACGCAAGCTTTCTAGACCAT

BO14564.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG32219-RA 453 CG32219-PA 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG32219-RA 997 CG32219-RA 64..513 17..466 2250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19950507..19950715 466..258 1045 100 Minus
3L 28110227 3L 19950766..19950936 257..87 855 100 Minus
3L 28110227 3L 19951003..19951072 86..17 350 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:34:23 has no hits.

BO14564.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:26 Download gff for BO14564.complete
Subject Subject Range Query Range Percent Splice Strand
CG32219-RA 1..453 17..470 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:34 Download gff for BO14564.complete
Subject Subject Range Query Range Percent Splice Strand
CG32219-RA 62..520 14..474 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:05 Download gff for BO14564.complete
Subject Subject Range Query Range Percent Splice Strand
CG32219-RA 64..513 17..468 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:26 Download gff for BO14564.complete
Subject Subject Range Query Range Percent Splice Strand
CG32219-RA 62..520 14..474 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:34 Download gff for BO14564.complete
Subject Subject Range Query Range Percent Splice Strand
CG32219-RA 64..513 17..468 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:34 Download gff for BO14564.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19950505..19950715 258..468 99 <- Minus
3L 19950766..19950936 87..257 100 <- Minus
3L 19951003..19951072 17..86 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:05 Download gff for BO14564.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19943605..19943815 258..468 99 <- Minus
arm_3L 19943866..19944036 87..257 100 <- Minus
arm_3L 19944103..19944172 17..86 100   Minus

BO14564.pep Sequence

Translation from 16 to 484

> BO14564.pep
MLIQVLVFFLLYRNTYEDCNHNHSAVEDHYDCGCCPGISNNNGQVVGFHC
HKDDQNSILRFASDEESAFAECVPNCFEIKYPIQEYCCFWSPKLGCTILV
NEKYFSNKDLCNNCKYFCQRTTGDGRSSSYPQKLILLLSLLLIGCNYFQN
ASFLDH

BO14564.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG32219-PA 150 CG32219-PA 1..150 1..150 850 100 Plus
CG34258-PA 165 CG34258-PA 59..164 48..143 177 34.9 Plus
CG33710-PA 162 CG33710-PA 45..131 32..118 168 35.2 Plus