Clone Sequence Records
BO14572.3prime Sequence
945 bp (806 high quality bases) assembled on 2006-05-29
> BO14572.3prime
ATGGTCTAGAAAGCTTGCGAGCACCATGGTGCGGAACAAGATGGTGAATC
CAGCGATTGTGCAGAACATGAAAAGCGTCAGGATACTTCCGCCCAGCAGA
AATTGAAAAGGTCTGACATTGCCCCAGCCGGCGACAATTGTGTTGGCCGG
GCTGCTCACGGGCAGCAAAAACTGATTGTGCAACGCGGTGGCAAATGGCA
GTGAAAAGGAATTACCCGCGGTTACCATGGTGGGCAATGCCAACTTGGCC
ACGGTGGTGGCCGGCGACAGCGTGGTCCAAAGTGTTCCAAGCAAGGCGCC
GCAGATGAAGCTCTTCATATTGAATCCCTTGTTATCGGAGTTCATCGAAT
CCGCCAAGTAGGTGTTCAATCCACAAACAGCGGAACTATAGCTAAAGCTG
AAGGCGGCGCCCAGCATAAAGATTTCCGCCCAGGGAGTATTGTTGTTGAC
CGCCTTCCAGCCCAGAAGTGAATTGGCAGGACCCTCTTTCTCCGGCTGGC
GGCAAACATAGTATCTGCAGAATATATAGTTGGCCGGAATTGCGAAGAAG
AGAATGGACATGCCAATGCCGGCCACTGAGAGACCAGATTCCGCCTTATA
GTTTATACTATCCCAGCCCGTAAAGATGCGCGGCTTGCGAGTGGCCACCA
GCAGGAACATCAATAGAATCAAGCTCAAGGCCAAGATGGGATATATTCCC
CAGGGACCAAGAGCCTGTTTTCTTTCAGACGCGGTCTGTTTAAAGCCCGC
CTTAGCCCCAGCCATTTCCGCCAGATCGCGCTTCACACTGCCTCCAAGGA
GACCGAGGAAGAGGACTTGCAACCAGAAGATCATGACAACGAGACCCATT
AGAGCTGGTCCCGCCATTAGCATGCCAATTTTCAGAACTGTAAGAGACCC
CCCCAAAACATCGCTTATCACACCATTGGGATTGACAATGGGGCG
BO14572.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7309-PA | 1380 | CG7309-RA | 454..1377 | 942..19 | 4495 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:56:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7309-RC | 2093 | CG7309-RC | 742..1665 | 942..19 | 4545 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:56:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10907080..10907763 | 216..899 | 3390 | 99.7 | Plus |
2L | 23513712 | 2L | 10906847..10906964 | 100..217 | 590 | 100 | Plus |
2L | 23513712 | 2L | 10906698..10906778 | 19..99 | 405 | 100 | Plus |
2L | 23513712 | 2L | 10907826..10907871 | 897..942 | 185 | 93.5 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:56:54 has no hits.
BO14572.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:03 Download gff for
BO14572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-PA | 452..1380 | 16..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:34 Download gff for
BO14572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-PA | 452..1380 | 16..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:44:50 Download gff for
BO14572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-RC | 740..1671 | 11..945 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:52:11 Download gff for
BO14572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-RC | 740..1671 | 11..945 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:52:11 Download gff for
BO14572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10906692..10906778 | 11..99 | 95 | <- | Plus |
2L | 10906847..10906963 | 100..216 | 100 | <- | Plus |
2L | 10907081..10907762 | 217..898 | 99 | <- | Plus |
2L | 10907828..10907873 | 899..945 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:44:50 Download gff for
BO14572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10906692..10906778 | 11..99 | 95 | <- | Plus |
arm_2L | 10906847..10906963 | 100..216 | 100 | <- | Plus |
arm_2L | 10907081..10907762 | 217..898 | 99 | <- | Plus |
arm_2L | 10907828..10907873 | 899..945 | 91 | | Plus |
BO14572.5prime Sequence
840 bp (797 high quality bases) assembled on 2006-05-29
> BO14572.5prime
GAAGTTATCAGTCGACATGGCCAGAGGAGCTGCCGCCTTCATCTATATGG
TTTTCATACCCGTTGCAGGCATTGCGAGCTCTAAAGAGATCAGTGTGTCG
TACTACACTGATCTCATATTTTTCGTTTATTCCGCTATATTCATGGGCAT
CATGATGGACAGTTCGAAATTGAGTGACCGCTTGGCTTTTATTGTCATCT
CCTTGGTCGGTGGAAGTTTGAAATTTCTTCAGATTTTCTTGACCATCGCC
GCGGCCATTGTGTCCATTTTGGTGAATCCCACAATATCCGCTGCTTTTTG
GATGAAGGTGTCCCAAGCCGTGATGGTGGAATACGATAATGGTGGTTTGA
TAAAATTAAACTCTGAAGAGAAGCCCTATGAAATTGGATCCAAACCATAT
CCCACGCGTCCTGTAATCGGAATATACCTAACCTGTTGCTACGCAGCCTC
TTTGGCAGCAAGTCTTTCGCCCATCGTCAATCCCAATGGTGTGATAAGCG
ATGGTTTTGGGGGGTCTCTTACAGTTCTGGAAATTGGCATGCTAATGGCG
GGACCAGCTCTAATGGGTCTCGTTGTCATGATCTTCTGGTTGCAAGTCCT
CTTCCTCGGTCTCCTTGGAGGCAGTGTGAAGCGCGATCTGGCGGAAATGG
CTGGGGCTAAGGCGGGCTTTAAACAGACCGCGTCTGAAAGAAAACAGGCT
CTTGGTCCCTGGGGAATATATCCCATCTTGGCCTTGAGCTTGATTCTATT
GATGTTCCTGCTGGTGGCCACTCGCAAGCCGCGCATCTTTACGGGCTGGG
ATAGTATAAACTATAAGGCGGAATCTGGTCTCTCAGTGGC
BO14572.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7309-PA | 1380 | CG7309-RA | 1..824 | 17..840 | 4120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7309-RC | 2093 | CG7309-RC | 289..1112 | 17..840 | 4120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10907436..10907763 | 840..513 | 1640 | 100 | Minus |
2L | 23513712 | 2L | 10908282..10908490 | 225..17 | 1045 | 100 | Minus |
2L | 23513712 | 2L | 10907826..10907950 | 515..391 | 625 | 100 | Minus |
2L | 23513712 | 2L | 10908114..10908229 | 341..226 | 580 | 100 | Minus |
2L | 23513712 | 2L | 10908013..10908062 | 390..341 | 250 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 05:30:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 7412..7471 | 318..259 | 110 | 68.9 | Minus |
BO14572.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:04 Download gff for
BO14572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-PA | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:36 Download gff for
BO14572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-PA | 1..824 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:57:10 Download gff for
BO14572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-RC | 289..1112 | 17..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:36 Download gff for
BO14572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-RC | 289..1112 | 17..840 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:36 Download gff for
BO14572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10907436..10907762 | 514..840 | 100 | <- | Minus |
2L | 10907828..10907950 | 391..513 | 100 | <- | Minus |
2L | 10908013..10908062 | 341..390 | 100 | <- | Minus |
2L | 10908115..10908229 | 226..340 | 100 | <- | Minus |
2L | 10908282..10908490 | 17..225 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:57:10 Download gff for
BO14572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10907436..10907762 | 514..840 | 100 | <- | Minus |
arm_2L | 10907828..10907950 | 391..513 | 100 | <- | Minus |
arm_2L | 10908013..10908062 | 341..390 | 100 | <- | Minus |
arm_2L | 10908115..10908229 | 226..340 | 100 | <- | Minus |
arm_2L | 10908282..10908490 | 17..225 | 100 | | Minus |
BO14572.complete Sequence
1411 bp assembled on 2006-10-11
GenBank Submission: FJ633182
> BO14572.complete
GAAGTTATCAGTCGACATGGCCAGAGGAGCTGCCGCCTTCATCTATATGG
TTTTCATACCCGTTGCAGGCATTGCGAGCTCTAAAGAGATCAGTGTGTCG
TACTACACTGATCTCATATTTTTCGTTTATTCCGCTATATTCATGGGCAT
CATGATGGACAGTTCGAAATTGAGTGACCGCTTGGCTTTTATTGTCATCT
CCTTGGTCGGTGGAAGTTTGAAATTTCTTCAGATTTTCTTGACCATCGCC
GCGGCCATTGTGTCCATTTTGGTGAATCCCACAATATCCGCTGCTTTTTG
GATGAAGGTGTCCCAAGCCGTGATGGTGGAATACGATAATGGTGGTTTGA
TAAAATTAAACTCTGAAGAGAAGCCCTATGAAATTGGATCCAAACCATAT
CCCACGCGTCCTGTAATCGGAATATACCTAACCTGTTGCTACGCAGCCTC
TTTGGCAGCAAGTCTTTCGCCCATCGTCAATCCCAATGGTGTGATAAGCG
ATGGTTTTGGGGGGTCTCTTACAGTTCTGGAAATTGGCATGCTAATGGCG
GGACCAGCTCTAATGGGTCTCGTTGTCATGATCTTCTGGTTGCAAGTCCT
CTTCCTCGGTCTCCTTGGAGGCAGTGTGAAGCGCGATCTGGCGGAAATGG
CTGGGGCTAAGGCGGGCTTTAAACAGACCGCGTCTGAAAGAAAACAGGCT
CTTGGTCCCTGGGGAATATATCCCATCTTGGCCTTGAGCTTGATTCTATT
GATGTTCCTGCTGGTGGCCACTCGCAAGCCGCGCATCTTTACGGGCTGGG
ATAGTATAAACTATAAGGCGGAATCTGGTCTCTCAGTGGCCGGCATTGGC
ATGTCCATTCTCTTCTTCGCAATTCCGGCCAACTATATATTCTGCAGATA
CTATGTTTGCCGCCAGCCGGAGAAAGAGGGTCCTGCCAATTCACTTCTGG
GCTGGAAGGCGGTCAACAACAATACTCCCTGGGCGGAAATCTTTATGCTG
GGCGCCGCCTTCAGCTTTAGCTATAGTTCCGCTGTTTGTGGATTGAACAC
CTACTTGGCGGATTCGATGAACTCCGATAACAAGGGATTCAATATGAAGA
GCTTCATCTGCGGCGCCTTGCTTGGAACACTTTGGACCACGCTGTCGCCG
GCCACCACCGTGGCCAAGTTGGCATTGCCCACCATGGTAACCGCGGGTAA
TTCCTTTTCACTGCCATTTGCCACCGCGTTGCACAATCAGTTTTTGCTGC
CCGTGAGCAGCCCGGCCAACACAATTGTCGCCGGCTGGGGCAATGTCAGA
CCTTTTCAATTTCTGCTGGGCGGAAGTATCCTGACGCTTTTCATGTTCTG
CACAATCGCTGGATTCACCATCTTGTTCCGCACCATGGTGCTCGCAAGCT
TTCTAGACCAT
BO14572.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:04:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7309-RC | 1587 | CG7309-PC | 208..1584 | 17..1393 | 6870 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:04:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7309-RC | 2093 | CG7309-RC | 289..1665 | 17..1393 | 6870 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10907080..10907763 | 1196..513 | 3405 | 99.9 | Minus |
2L | 23513712 | 2L | 10908282..10908490 | 225..17 | 1045 | 100 | Minus |
2L | 23513712 | 2L | 10907826..10907950 | 515..391 | 625 | 100 | Minus |
2L | 23513712 | 2L | 10906847..10906964 | 1312..1195 | 590 | 100 | Minus |
2L | 23513712 | 2L | 10908114..10908229 | 341..226 | 580 | 100 | Minus |
2L | 23513712 | 2L | 10906698..10906778 | 1393..1313 | 405 | 100 | Minus |
2L | 23513712 | 2L | 10908013..10908062 | 390..341 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:04:00 has no hits.
BO14572.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:22 Download gff for
BO14572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-RB | 205..1584 | 17..1396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:39 Download gff for
BO14572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-RB | 206..1588 | 17..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:00 Download gff for
BO14572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-RC | 289..1665 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:23 Download gff for
BO14572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-RB | 206..1588 | 17..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:06 Download gff for
BO14572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7309-RC | 289..1665 | 17..1395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:06 Download gff for
BO14572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10906847..10906963 | 1196..1312 | 100 | <- | Minus |
2L | 10906695..10906778 | 1313..1395 | 97 | <- | Minus |
2L | 10907081..10907762 | 514..1195 | 99 | <- | Minus |
2L | 10907828..10907950 | 391..513 | 100 | <- | Minus |
2L | 10908013..10908062 | 341..390 | 100 | <- | Minus |
2L | 10908115..10908229 | 226..340 | 100 | <- | Minus |
2L | 10908282..10908490 | 17..225 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:00 Download gff for
BO14572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10906695..10906778 | 1313..1395 | 97 | <- | Minus |
arm_2L | 10906847..10906963 | 1196..1312 | 100 | <- | Minus |
arm_2L | 10907081..10907762 | 514..1195 | 99 | <- | Minus |
arm_2L | 10907828..10907950 | 391..513 | 100 | <- | Minus |
arm_2L | 10908013..10908062 | 341..390 | 100 | <- | Minus |
arm_2L | 10908115..10908229 | 226..340 | 100 | <- | Minus |
arm_2L | 10908282..10908490 | 17..225 | 100 | | Minus |
BO14572.pep Sequence
Translation from 16 to 1411
> BO14572.pep
MARGAAAFIYMVFIPVAGIASSKEISVSYYTDLIFFVYSAIFMGIMMDSS
KLSDRLAFIVISLVGGSLKFLQIFLTIAAAIVSILVNPTISAAFWMKVSQ
AVMVEYDNGGLIKLNSEEKPYEIGSKPYPTRPVIGIYLTCCYAASLAASL
SPIVNPNGVISDGFGGSLTVLEIGMLMAGPALMGLVVMIFWLQVLFLGLL
GGSVKRDLAEMAGAKAGFKQTASERKQALGPWGIYPILALSLILLMFLLV
ATRKPRIFTGWDSINYKAESGLSVAGIGMSILFFAIPANYIFCRYYVCRQ
PEKEGPANSLLGWKAVNNNTPWAEIFMLGAAFSFSYSSAVCGLNTYLADS
MNSDNKGFNMKSFICGALLGTLWTTLSPATTVAKLALPTMVTAGNSFSLP
FATALHNQFLLPVSSPANTIVAGWGNVRPFQFLLGGSILTLFMFCTIAGF
TILFRTMVLASFLDH
BO14572.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7309-PC | 528 | CG7309-PC | 70..528 | 1..459 | 2338 | 100 | Plus |
Indy-PD | 572 | CG3979-PD | 71..548 | 7..452 | 431 | 26.8 | Plus |
Indy-PA | 572 | CG3979-PA | 71..548 | 7..452 | 431 | 26.8 | Plus |
Indy-PC | 572 | CG3979-PC | 71..548 | 7..452 | 431 | 26.8 | Plus |
Indy-PB | 590 | CG3979-PB | 89..566 | 7..452 | 431 | 26.8 | Plus |