Clone BO14574 Report

Search the DGRC for BO14574

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:145
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG17440-RA
Protein status:BO14574.pep: validated full length
Sequenced Size:1132

Clone Sequence Records

BO14574.3prime Sequence

847 bp (826 high quality bases) assembled on 2006-05-29

> BO14574.3prime
ATGGTCTAGAAAGCTTGCTGGATTTTCCGGTTTATGCTGTTGTTGCTGCA
ACAGCTGTCGCTGCTGCTGCAACAGCTGCATTTGCAGTTGCAGTTGCTGA
ACATGATGTGGCTTCAAGTGCAGTTGCTGCAGCAACTGTTGTTGCTCCTG
CTCCTGCTGTTGTTGCAACTCCTGCTGTTGTTGTAACTCCTGCTGTTGTT
GCTGCTGCTGCGGTTGTTGCTGCAACATTAGCTTTTGCTTCTCTTGGTAC
TGTTTCTGCTGAGTCTGTATCTGTTGCCTCTGCTTCTCGAACTCCTCCAG
TTGCTCCTGCTGTTTGAGCACCAGCTCGTCCATGTTGAGCTCTAGATGCT
TGCGTGTTTCCTCGGCGGCGCGGCTAGGCGTAATATTCCACTCTTGCATT
TGTTGCGGCAGAATCTGAAATAGGCGTTCGATGGCTAGATTAGAGCCACA
CTCATCGCTGCAGTACTTGCTCTGCGGCCTCGCATGGGAGCAGCAATTGG
GTCCGTGGCACTGCTGGATGCCCTGTAGCTCCGGATTGAGGAATATCTCC
GGACTGACCGCCCGCGGGCTCACCTGGACATTGGAAGTCTTGGGTGCCGC
CTTATCCCGCTTCGTACCTGCTTGAGTCGGCTGCGACTCCTTTGGTTCTT
GGGCGCTGCTGTTTTTGCGCTTCGCTGCCGCAGTGGTCGGTGGCGGCGCT
TGCTGGCTGGTTGTTGCGGGCGCCACCGGTGCAGCAGCANGCGCAGCTCC
CGATGGACCTACGCCCGGGGCATTGAGACTTGTAGAGGCGGCGTTCGATG
CGGCTGCACGTTCGGTGGCCACCAGGCGGAATATAGTCTGCAGTTCG

BO14574.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17440-PA 1101 CG17440-RA 270..1098 847..19 4126 99.8 Minus
CG17446-PA 1992 CG17446-RA 349..543 834..640 881 97.9 Minus
CG17446-PA 1992 CG17446-RA 744..883 583..444 500 94.2 Minus
CG17446-PA 1992 CG17446-RA 914..983 413..344 225 92.8 Minus
CG17446-PA 1992 CG17446-RA 1698..1782 277..190 195 88.6 Minus
CG17446-PA 1992 CG17446-RA 1624..1681 333..276 190 93.1 Minus
CG2904-PA 5139 ec-RA 4316..4350 224..190 150 97.1 Minus
CG2904-PA 5139 ec-RA 4350..4383 223..190 145 97 Minus
CG33106-PA 12006 mask-RA 3567..3600 223..190 145 97 Minus
CG33106-PB 12006 mask-RB 3567..3600 223..190 145 97 Minus
CG7847-PA 3561 sr-RA 564..590 223..197 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17440-RA 1300 CG17440-RA 401..1229 847..19 4134 99.9 Minus
Cfp1-RB 2344 CG17446-RB 689..994 643..344 965 87.9 Minus
Cfp1-RA 2404 CG17446-RA 749..1054 643..344 965 87.9 Minus
Cfp1-RB 2344 CG17446-RB 347..554 847..640 939 96.6 Minus
Cfp1-RB 2344 CG17446-RB 1635..1858 333..119 370 78.1 Minus
Cfp1-RB 2344 CG17446-RB 1790..1944 223..60 310 80.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9268971..9269403 415..847 2154 99.8 Plus
X 23542271 X 9268509..9268908 19..418 2000 100 Plus
X 23542271 X 9272285..9272492 640..847 939 96.6 Plus
X 23542271 X 9271933..9272118 432..617 690 91.4 Plus
X 23542271 X 9270967..9271143 172..333 305 80.6 Plus
X 23542271 X 9271784..9271858 344..418 285 92 Plus
X 23542271 X 9270850..9270988 82..223 270 81 Plus
Blast to na_te.dros performed 2015-02-11 18:16:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2785..2986 350..155 258 63.1 Minus
X-element 4740 X-element ROXELEMENT 4740bp 1711..1764 246..193 108 66.7 Minus

BO14574.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:07 Download gff for BO14574.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17440-PA 270..1101 18..847 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:40 Download gff for BO14574.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17440-PA 270..1101 18..847 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:31:11 Download gff for BO14574.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17440-RA 401..1236 10..847 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:46:22 Download gff for BO14574.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17440-RA 401..1236 10..847 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:46:22 Download gff for BO14574.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9268502..9268904 10..414 99 <- Plus
X 9268971..9269403 415..847 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:31:11 Download gff for BO14574.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9162535..9162937 10..414 99 <- Plus
arm_X 9163004..9163436 415..847 99   Plus

BO14574.5prime Sequence

886 bp (821 high quality bases) assembled on 2006-05-29

> BO14574.5prime
GAAGTTATCAGTCGACATGACGGACAATGATAAGAAGACCGAAGAAGAAA
TCAGGCGGGAGATCGCACGGGAATTTGATTTGCCTGAGCGCAAGTCCAAG
ATAGCCACCATTCTTAAGCAGAAAGACCGTGAGTACTGCATATGCCGCTC
CTCCGACTGCTCCAGGTTCATGATAGGCTGCGATGGTTGCGAGGAGTGGT
ACCACGGCGACTGTATAGAGATCACCGAGAAGGACGCTGAGCACATCAAA
AATTACTACTGCCGGCGCTGCAAAAAAGAGAATCCCGAACTGCAGACTAT
ATTCCGCCTGGTGGCCACCGAACGTGCAGCCGCATCGAACGCCGCCTCTA
CAAGTCTCAATGCCCCGGGCGTAGGTCCATCGGGAGCTGCGCCTGCTGCT
GCACCGGTGGCGCCCGCAACAACCAGCCAGCAAGCGCCGCCACCGACCAC
TGCGGCAGCGAAGCGCAAAAACAGCAGCGCCCAAGAACCAAAGGAGTCGC
AGCCGACTCAAGCAGGTACGAAGCGGGATAAGGCGGCACCCAAGACTTCC
AATGTCCAGGTGAGCCCGCGGGCGGTCAGTCCGGAGATATTCCTCAATCC
GGAGCTACAGGGCATCCAGCAGTGCCACGGACCCAATTGCTGCTCCCATG
CGAGGCCGCAGAGCAAGTACTGCAGCGATGAGTGTGGCTCTAATCTAGCC
ATCGAACGCCTATTTCAGATTCTGCCGCAACAAATGCAAGAGTGGAATAT
TACGCCTAGCCGCGCCGCCGAGGAAACACGCAAGCATCTAGAGCTCAACA
TGGACGAGCTGGTGCTCAAACAGCAGGAGCAACTGGAGGAGTTCGAGAAG
CAGAGGCAACAGATACAGACTCAGCAGAAACAGTAC

BO14574.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17440-PA 1101 CG17440-RA 1..870 17..886 4350 100 Plus
CG17446-PA 1992 CG17446-RA 183..543 133..493 1480 96.3 Plus
CG17446-PA 1992 CG17446-RA 744..883 550..689 500 94.2 Plus
CG17446-PA 1992 CG17446-RA 97..178 47..128 360 97.5 Plus
CG17446-PA 1992 CG17446-RA 914..983 720..789 225 92.8 Plus
CG17446-PA 1992 CG17446-RA 1624..1681 800..857 190 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17440-RA 1300 CG17440-RA 128..1001 13..886 4355 99.9 Plus
Cfp1-RB 2344 CG17446-RB 91..554 30..493 2020 95.7 Plus
Cfp1-RA 2404 CG17446-RA 163..614 42..493 1975 95.8 Plus
Cfp1-RB 2344 CG17446-RB 689..994 490..789 965 87.9 Plus
Cfp1-RB 2344 CG17446-RB 1635..1692 800..857 230 93.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9268971..9269514 718..175 2720 100 Minus
X 23542271 X 9272285..9272603 493..175 1400 95.9 Minus
X 23542271 X 9268737..9268908 886..715 860 100 Minus
X 23542271 X 9271933..9272118 701..516 690 91.4 Minus
X 23542271 X 9269577..9269710 174..41 670 100 Minus
X 23542271 X 9272666..9272798 174..42 575 95.5 Minus
X 23542271 X 9271784..9271858 789..715 285 92 Minus
X 23542271 X 9271086..9271143 857..800 230 93.1 Minus
Blast to na_te.dros performed on 2015-02-10 21:57:33 has no hits.

BO14574.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:08 Download gff for BO14574.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17440-PA 1..870 17..886 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:41 Download gff for BO14574.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17440-PA 1..870 17..886 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:52:28 Download gff for BO14574.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17440-RA 121..1001 7..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:32 Download gff for BO14574.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17440-RA 121..1001 7..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:32 Download gff for BO14574.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9269577..9269710 41..174 100 <- Minus
X 9268737..9268904 719..886 100 <- Minus
X 9268971..9269514 175..718 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:52:28 Download gff for BO14574.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9162770..9162937 719..886 100 <- Minus
arm_X 9163004..9163547 175..718 100 <- Minus
arm_X 9163610..9163743 41..174 100 <- Minus

BO14574.complete Sequence

1132 bp assembled on 2006-10-11

GenBank Submission: FJ633183

> BO14574.complete
GAAGTTATCAGTCGACATGACGGACAATGATAAGAAGACCGAAGAAGAAA
TCAGGCGGGAGATCGCACGGGAATTTGATTTGCCTGAGCGCAAGTCCAAG
ATAGCCACCATTCTTAAGCAGAAAGACCGTGAGTACTGCATATGCCGCTC
CTCCGACTGCTCCAGGTTCATGATAGGCTGCGATGGTTGCGAGGAGTGGT
ACCACGGCGACTGTATAGAGATCACCGAGAAGGACGCTGAGCACATCAAA
AATTACTACTGCCGGCGCTGCAAAAAAGAGAATCCCGAACTGCAGACTAT
ATTCCGCCTGGTGGCCACCGAACGTGCAGCCGCATCGAACGCCGCCTCTA
CAAGTCTCAATGCCCCGGGCGTAGGTCCATCGGGAGCTGCGCCTGCTGCT
GCACCGGTGGCGCCCGCAACAACCAGCCAGCAAGCGCCGCCACCGACCAC
TGCGGCAGCGAAGCGCAAAAACAGCAGCGCCCAAGAACCAAAGGAGTCGC
AGCCGACTCAAGCAGGTACGAAGCGGGATAAGGCGGCACCCAAGACTTCC
AATGTCCAGGTGAGCCCGCGGGCGGTCAGTCCGGAGATATTCCTCAATCC
GGAGCTACAGGGCATCCAGCAGTGCCACGGACCCAATTGCTGCTCCCATG
CGAGGCCGCAGAGCAAGTACTGCAGCGATGAGTGTGGCTCTAATCTAGCC
ATCGAACGCCTATTTCAGATTCTGCCGCAACAAATGCAAGAGTGGAATAT
TACGCCTAGCCGCGCCGCCGAGGAAACACGCAAGCATCTAGAGCTCAACA
TGGACGAGCTGGTGCTCAAACAGCAGGAGCAACTGGAGGAGTTCGAGAAG
CAGAGGCAACAGATACAGACTCAGCAGAAACAGTACCAAGAGAAGCAAAA
GCTAATGTTGCAGCAACAACCGCAGCAGCAGCAACAACAGCAGGAGTTAC
AACAACAGCAGGAGTTGCAACAACAGCAGGAGCAGGAGCAACAACAGTTG
CTGCAGCAACTGCACTTGAAGCCACATCATGTTCAGCAACTGCAACTGCA
AATGCAGCTGTTGCAGCAGCAGCGACAGCTGTTGCAGCAACAACAGCATA
AACCGGAAAATCCAGCAAGCTTTCTAGACCAT

BO14574.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17440-RA 1101 CG17440-PA 1..1098 17..1114 5490 100 Plus
Cfp1-RB 1932 CG17446-PB 20..483 30..493 2020 95.7 Plus
Cfp1-RA 1992 CG17446-PA 92..543 42..493 1975 95.8 Plus
Cfp1-RB 1932 CG17446-PB 650..923 516..789 950 89.8 Plus
Cfp1-RB 1932 CG17446-PB 1564..1740 800..961 305 80.6 Plus
Cfp1-RB 1932 CG17446-PB 1719..1857 910..1051 270 81 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17440-RA 1300 CG17440-RA 128..1229 13..1114 5495 99.9 Plus
Cfp1-RB 2344 CG17446-RB 91..554 30..493 2020 95.7 Plus
Cfp1-RA 2404 CG17446-RA 163..614 42..493 1975 95.8 Plus
Cfp1-RB 2344 CG17446-RB 721..994 516..789 950 89.8 Plus
Cfp1-RB 2344 CG17446-RB 1635..1811 800..961 305 80.6 Plus
Cfp1-RB 2344 CG17446-RB 1790..1928 910..1051 270 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9268971..9269514 718..175 2720 100 Minus
X 23542271 X 9268509..9268908 1114..715 2000 100 Minus
X 23542271 X 9272285..9272603 493..175 1400 95.9 Minus
X 23542271 X 9271933..9272118 701..516 690 91.4 Minus
X 23542271 X 9269577..9269710 174..41 670 100 Minus
X 23542271 X 9272666..9272798 174..42 575 95.5 Minus
X 23542271 X 9270967..9271143 961..800 305 80.6 Minus
X 23542271 X 9271784..9271858 789..715 285 92 Minus
X 23542271 X 9270850..9270988 1051..910 270 81 Minus
Blast to na_te.dros performed 2014-11-26 16:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2785..2986 783..978 258 63.1 Plus

BO14574.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:28 Download gff for BO14574.complete
Subject Subject Range Query Range Percent Splice Strand
CG17440-RA 1..1101 17..1115 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:41 Download gff for BO14574.complete
Subject Subject Range Query Range Percent Splice Strand
CG17440-RA 108..1223 7..1123 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:37 Download gff for BO14574.complete
Subject Subject Range Query Range Percent Splice Strand
CG17440-RA 132..1229 17..1116 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:29 Download gff for BO14574.complete
Subject Subject Range Query Range Percent Splice Strand
CG17440-RA 108..1223 7..1123 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:16 Download gff for BO14574.complete
Subject Subject Range Query Range Percent Splice Strand
CG17440-RA 132..1229 17..1116 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:16 Download gff for BO14574.complete
Subject Subject Range Query Range Percent Splice Strand
X 9268507..9268904 719..1116 99 <- Minus
X 9268971..9269514 175..718 100 <- Minus
X 9269577..9269710 41..174 100 <- Minus
X 9269771..9269794 17..40 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:37 Download gff for BO14574.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9163610..9163743 41..174 100 <- Minus
arm_X 9163804..9163827 17..40 100   Minus
arm_X 9162540..9162937 719..1116 99 <- Minus
arm_X 9163004..9163547 175..718 100 <- Minus

BO14574.pep Sequence

Translation from 16 to 1132

> BO14574.pep
MTDNDKKTEEEIRREIAREFDLPERKSKIATILKQKDREYCICRSSDCSR
FMIGCDGCEEWYHGDCIEITEKDAEHIKNYYCRRCKKENPELQTIFRLVA
TERAAASNAASTSLNAPGVGPSGAAPAAAPVAPATTSQQAPPPTTAAAKR
KNSSAQEPKESQPTQAGTKRDKAAPKTSNVQVSPRAVSPEIFLNPELQGI
QQCHGPNCCSHARPQSKYCSDECGSNLAIERLFQILPQQMQEWNITPSRA
AEETRKHLELNMDELVLKQQEQLEEFEKQRQQIQTQQKQYQEKQKLMLQQ
QPQQQQQQQELQQQQELQQQQEQEQQQLLQQLHLKPHHVQQLQLQMQLLQ
QQRQLLQQQQHKPENPASFLDH

BO14574.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17440-PA 366 CG17440-PA 1..366 1..366 1918 100 Plus
Cfp1-PB 643 CG17446-PB 1..332 1..283 1155 70 Plus
Cfp1-PA 663 CG17446-PA 24..352 2..283 1144 69.4 Plus
Cfp1-PB 643 CG17446-PB 422..631 185..366 334 42.5 Plus
Cfp1-PA 663 CG17446-PA 442..651 185..366 334 42.5 Plus
CG44085-PM 864 CG44085-PM 146..393 105..363 230 31.7 Plus
CG44085-PO 2381 CG44085-PO 146..393 105..363 230 31.7 Plus
CG44085-PM 864 CG44085-PM 206..430 121..362 207 32.5 Plus