Clone Sequence Records
BO14574.3prime Sequence
847 bp (826 high quality bases) assembled on 2006-05-29
> BO14574.3prime
ATGGTCTAGAAAGCTTGCTGGATTTTCCGGTTTATGCTGTTGTTGCTGCA
ACAGCTGTCGCTGCTGCTGCAACAGCTGCATTTGCAGTTGCAGTTGCTGA
ACATGATGTGGCTTCAAGTGCAGTTGCTGCAGCAACTGTTGTTGCTCCTG
CTCCTGCTGTTGTTGCAACTCCTGCTGTTGTTGTAACTCCTGCTGTTGTT
GCTGCTGCTGCGGTTGTTGCTGCAACATTAGCTTTTGCTTCTCTTGGTAC
TGTTTCTGCTGAGTCTGTATCTGTTGCCTCTGCTTCTCGAACTCCTCCAG
TTGCTCCTGCTGTTTGAGCACCAGCTCGTCCATGTTGAGCTCTAGATGCT
TGCGTGTTTCCTCGGCGGCGCGGCTAGGCGTAATATTCCACTCTTGCATT
TGTTGCGGCAGAATCTGAAATAGGCGTTCGATGGCTAGATTAGAGCCACA
CTCATCGCTGCAGTACTTGCTCTGCGGCCTCGCATGGGAGCAGCAATTGG
GTCCGTGGCACTGCTGGATGCCCTGTAGCTCCGGATTGAGGAATATCTCC
GGACTGACCGCCCGCGGGCTCACCTGGACATTGGAAGTCTTGGGTGCCGC
CTTATCCCGCTTCGTACCTGCTTGAGTCGGCTGCGACTCCTTTGGTTCTT
GGGCGCTGCTGTTTTTGCGCTTCGCTGCCGCAGTGGTCGGTGGCGGCGCT
TGCTGGCTGGTTGTTGCGGGCGCCACCGGTGCAGCAGCANGCGCAGCTCC
CGATGGACCTACGCCCGGGGCATTGAGACTTGTAGAGGCGGCGTTCGATG
CGGCTGCACGTTCGGTGGCCACCAGGCGGAATATAGTCTGCAGTTCG
BO14574.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17440-PA | 1101 | CG17440-RA | 270..1098 | 847..19 | 4126 | 99.8 | Minus |
CG17446-PA | 1992 | CG17446-RA | 349..543 | 834..640 | 881 | 97.9 | Minus |
CG17446-PA | 1992 | CG17446-RA | 744..883 | 583..444 | 500 | 94.2 | Minus |
CG17446-PA | 1992 | CG17446-RA | 914..983 | 413..344 | 225 | 92.8 | Minus |
CG17446-PA | 1992 | CG17446-RA | 1698..1782 | 277..190 | 195 | 88.6 | Minus |
CG17446-PA | 1992 | CG17446-RA | 1624..1681 | 333..276 | 190 | 93.1 | Minus |
CG2904-PA | 5139 | ec-RA | 4316..4350 | 224..190 | 150 | 97.1 | Minus |
CG2904-PA | 5139 | ec-RA | 4350..4383 | 223..190 | 145 | 97 | Minus |
CG33106-PA | 12006 | mask-RA | 3567..3600 | 223..190 | 145 | 97 | Minus |
CG33106-PB | 12006 | mask-RB | 3567..3600 | 223..190 | 145 | 97 | Minus |
CG7847-PA | 3561 | sr-RA | 564..590 | 223..197 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:16:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17440-RA | 1300 | CG17440-RA | 401..1229 | 847..19 | 4134 | 99.9 | Minus |
Cfp1-RB | 2344 | CG17446-RB | 689..994 | 643..344 | 965 | 87.9 | Minus |
Cfp1-RA | 2404 | CG17446-RA | 749..1054 | 643..344 | 965 | 87.9 | Minus |
Cfp1-RB | 2344 | CG17446-RB | 347..554 | 847..640 | 939 | 96.6 | Minus |
Cfp1-RB | 2344 | CG17446-RB | 1635..1858 | 333..119 | 370 | 78.1 | Minus |
Cfp1-RB | 2344 | CG17446-RB | 1790..1944 | 223..60 | 310 | 80.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9268971..9269403 | 415..847 | 2154 | 99.8 | Plus |
X | 23542271 | X | 9268509..9268908 | 19..418 | 2000 | 100 | Plus |
X | 23542271 | X | 9272285..9272492 | 640..847 | 939 | 96.6 | Plus |
X | 23542271 | X | 9271933..9272118 | 432..617 | 690 | 91.4 | Plus |
X | 23542271 | X | 9270967..9271143 | 172..333 | 305 | 80.6 | Plus |
X | 23542271 | X | 9271784..9271858 | 344..418 | 285 | 92 | Plus |
X | 23542271 | X | 9270850..9270988 | 82..223 | 270 | 81 | Plus |
Blast to na_te.dros performed 2015-02-11 18:16:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2986 | 350..155 | 258 | 63.1 | Minus |
X-element | 4740 | X-element ROXELEMENT 4740bp | 1711..1764 | 246..193 | 108 | 66.7 | Minus |
BO14574.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:07 Download gff for
BO14574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17440-PA | 270..1101 | 18..847 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:40 Download gff for
BO14574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17440-PA | 270..1101 | 18..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:31:11 Download gff for
BO14574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17440-RA | 401..1236 | 10..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:46:22 Download gff for
BO14574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17440-RA | 401..1236 | 10..847 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:46:22 Download gff for
BO14574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9268502..9268904 | 10..414 | 99 | <- | Plus |
X | 9268971..9269403 | 415..847 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:31:11 Download gff for
BO14574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9162535..9162937 | 10..414 | 99 | <- | Plus |
arm_X | 9163004..9163436 | 415..847 | 99 | | Plus |
BO14574.5prime Sequence
886 bp (821 high quality bases) assembled on 2006-05-29
> BO14574.5prime
GAAGTTATCAGTCGACATGACGGACAATGATAAGAAGACCGAAGAAGAAA
TCAGGCGGGAGATCGCACGGGAATTTGATTTGCCTGAGCGCAAGTCCAAG
ATAGCCACCATTCTTAAGCAGAAAGACCGTGAGTACTGCATATGCCGCTC
CTCCGACTGCTCCAGGTTCATGATAGGCTGCGATGGTTGCGAGGAGTGGT
ACCACGGCGACTGTATAGAGATCACCGAGAAGGACGCTGAGCACATCAAA
AATTACTACTGCCGGCGCTGCAAAAAAGAGAATCCCGAACTGCAGACTAT
ATTCCGCCTGGTGGCCACCGAACGTGCAGCCGCATCGAACGCCGCCTCTA
CAAGTCTCAATGCCCCGGGCGTAGGTCCATCGGGAGCTGCGCCTGCTGCT
GCACCGGTGGCGCCCGCAACAACCAGCCAGCAAGCGCCGCCACCGACCAC
TGCGGCAGCGAAGCGCAAAAACAGCAGCGCCCAAGAACCAAAGGAGTCGC
AGCCGACTCAAGCAGGTACGAAGCGGGATAAGGCGGCACCCAAGACTTCC
AATGTCCAGGTGAGCCCGCGGGCGGTCAGTCCGGAGATATTCCTCAATCC
GGAGCTACAGGGCATCCAGCAGTGCCACGGACCCAATTGCTGCTCCCATG
CGAGGCCGCAGAGCAAGTACTGCAGCGATGAGTGTGGCTCTAATCTAGCC
ATCGAACGCCTATTTCAGATTCTGCCGCAACAAATGCAAGAGTGGAATAT
TACGCCTAGCCGCGCCGCCGAGGAAACACGCAAGCATCTAGAGCTCAACA
TGGACGAGCTGGTGCTCAAACAGCAGGAGCAACTGGAGGAGTTCGAGAAG
CAGAGGCAACAGATACAGACTCAGCAGAAACAGTAC
BO14574.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:24:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17440-PA | 1101 | CG17440-RA | 1..870 | 17..886 | 4350 | 100 | Plus |
CG17446-PA | 1992 | CG17446-RA | 183..543 | 133..493 | 1480 | 96.3 | Plus |
CG17446-PA | 1992 | CG17446-RA | 744..883 | 550..689 | 500 | 94.2 | Plus |
CG17446-PA | 1992 | CG17446-RA | 97..178 | 47..128 | 360 | 97.5 | Plus |
CG17446-PA | 1992 | CG17446-RA | 914..983 | 720..789 | 225 | 92.8 | Plus |
CG17446-PA | 1992 | CG17446-RA | 1624..1681 | 800..857 | 190 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17440-RA | 1300 | CG17440-RA | 128..1001 | 13..886 | 4355 | 99.9 | Plus |
Cfp1-RB | 2344 | CG17446-RB | 91..554 | 30..493 | 2020 | 95.7 | Plus |
Cfp1-RA | 2404 | CG17446-RA | 163..614 | 42..493 | 1975 | 95.8 | Plus |
Cfp1-RB | 2344 | CG17446-RB | 689..994 | 490..789 | 965 | 87.9 | Plus |
Cfp1-RB | 2344 | CG17446-RB | 1635..1692 | 800..857 | 230 | 93.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9268971..9269514 | 718..175 | 2720 | 100 | Minus |
X | 23542271 | X | 9272285..9272603 | 493..175 | 1400 | 95.9 | Minus |
X | 23542271 | X | 9268737..9268908 | 886..715 | 860 | 100 | Minus |
X | 23542271 | X | 9271933..9272118 | 701..516 | 690 | 91.4 | Minus |
X | 23542271 | X | 9269577..9269710 | 174..41 | 670 | 100 | Minus |
X | 23542271 | X | 9272666..9272798 | 174..42 | 575 | 95.5 | Minus |
X | 23542271 | X | 9271784..9271858 | 789..715 | 285 | 92 | Minus |
X | 23542271 | X | 9271086..9271143 | 857..800 | 230 | 93.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:57:33 has no hits.
BO14574.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:08 Download gff for
BO14574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17440-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:41 Download gff for
BO14574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17440-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:52:28 Download gff for
BO14574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17440-RA | 121..1001 | 7..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:32 Download gff for
BO14574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17440-RA | 121..1001 | 7..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:32 Download gff for
BO14574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9269577..9269710 | 41..174 | 100 | <- | Minus |
X | 9268737..9268904 | 719..886 | 100 | <- | Minus |
X | 9268971..9269514 | 175..718 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:52:28 Download gff for
BO14574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9162770..9162937 | 719..886 | 100 | <- | Minus |
arm_X | 9163004..9163547 | 175..718 | 100 | <- | Minus |
arm_X | 9163610..9163743 | 41..174 | 100 | <- | Minus |
BO14574.complete Sequence
1132 bp assembled on 2006-10-11
GenBank Submission: FJ633183
> BO14574.complete
GAAGTTATCAGTCGACATGACGGACAATGATAAGAAGACCGAAGAAGAAA
TCAGGCGGGAGATCGCACGGGAATTTGATTTGCCTGAGCGCAAGTCCAAG
ATAGCCACCATTCTTAAGCAGAAAGACCGTGAGTACTGCATATGCCGCTC
CTCCGACTGCTCCAGGTTCATGATAGGCTGCGATGGTTGCGAGGAGTGGT
ACCACGGCGACTGTATAGAGATCACCGAGAAGGACGCTGAGCACATCAAA
AATTACTACTGCCGGCGCTGCAAAAAAGAGAATCCCGAACTGCAGACTAT
ATTCCGCCTGGTGGCCACCGAACGTGCAGCCGCATCGAACGCCGCCTCTA
CAAGTCTCAATGCCCCGGGCGTAGGTCCATCGGGAGCTGCGCCTGCTGCT
GCACCGGTGGCGCCCGCAACAACCAGCCAGCAAGCGCCGCCACCGACCAC
TGCGGCAGCGAAGCGCAAAAACAGCAGCGCCCAAGAACCAAAGGAGTCGC
AGCCGACTCAAGCAGGTACGAAGCGGGATAAGGCGGCACCCAAGACTTCC
AATGTCCAGGTGAGCCCGCGGGCGGTCAGTCCGGAGATATTCCTCAATCC
GGAGCTACAGGGCATCCAGCAGTGCCACGGACCCAATTGCTGCTCCCATG
CGAGGCCGCAGAGCAAGTACTGCAGCGATGAGTGTGGCTCTAATCTAGCC
ATCGAACGCCTATTTCAGATTCTGCCGCAACAAATGCAAGAGTGGAATAT
TACGCCTAGCCGCGCCGCCGAGGAAACACGCAAGCATCTAGAGCTCAACA
TGGACGAGCTGGTGCTCAAACAGCAGGAGCAACTGGAGGAGTTCGAGAAG
CAGAGGCAACAGATACAGACTCAGCAGAAACAGTACCAAGAGAAGCAAAA
GCTAATGTTGCAGCAACAACCGCAGCAGCAGCAACAACAGCAGGAGTTAC
AACAACAGCAGGAGTTGCAACAACAGCAGGAGCAGGAGCAACAACAGTTG
CTGCAGCAACTGCACTTGAAGCCACATCATGTTCAGCAACTGCAACTGCA
AATGCAGCTGTTGCAGCAGCAGCGACAGCTGTTGCAGCAACAACAGCATA
AACCGGAAAATCCAGCAAGCTTTCTAGACCAT
BO14574.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:16:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17440-RA | 1101 | CG17440-PA | 1..1098 | 17..1114 | 5490 | 100 | Plus |
Cfp1-RB | 1932 | CG17446-PB | 20..483 | 30..493 | 2020 | 95.7 | Plus |
Cfp1-RA | 1992 | CG17446-PA | 92..543 | 42..493 | 1975 | 95.8 | Plus |
Cfp1-RB | 1932 | CG17446-PB | 650..923 | 516..789 | 950 | 89.8 | Plus |
Cfp1-RB | 1932 | CG17446-PB | 1564..1740 | 800..961 | 305 | 80.6 | Plus |
Cfp1-RB | 1932 | CG17446-PB | 1719..1857 | 910..1051 | 270 | 81 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17440-RA | 1300 | CG17440-RA | 128..1229 | 13..1114 | 5495 | 99.9 | Plus |
Cfp1-RB | 2344 | CG17446-RB | 91..554 | 30..493 | 2020 | 95.7 | Plus |
Cfp1-RA | 2404 | CG17446-RA | 163..614 | 42..493 | 1975 | 95.8 | Plus |
Cfp1-RB | 2344 | CG17446-RB | 721..994 | 516..789 | 950 | 89.8 | Plus |
Cfp1-RB | 2344 | CG17446-RB | 1635..1811 | 800..961 | 305 | 80.6 | Plus |
Cfp1-RB | 2344 | CG17446-RB | 1790..1928 | 910..1051 | 270 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9268971..9269514 | 718..175 | 2720 | 100 | Minus |
X | 23542271 | X | 9268509..9268908 | 1114..715 | 2000 | 100 | Minus |
X | 23542271 | X | 9272285..9272603 | 493..175 | 1400 | 95.9 | Minus |
X | 23542271 | X | 9271933..9272118 | 701..516 | 690 | 91.4 | Minus |
X | 23542271 | X | 9269577..9269710 | 174..41 | 670 | 100 | Minus |
X | 23542271 | X | 9272666..9272798 | 174..42 | 575 | 95.5 | Minus |
X | 23542271 | X | 9270967..9271143 | 961..800 | 305 | 80.6 | Minus |
X | 23542271 | X | 9271784..9271858 | 789..715 | 285 | 92 | Minus |
X | 23542271 | X | 9270850..9270988 | 1051..910 | 270 | 81 | Minus |
Blast to na_te.dros performed 2014-11-26 16:16:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2986 | 783..978 | 258 | 63.1 | Plus |
BO14574.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:28 Download gff for
BO14574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17440-RA | 1..1101 | 17..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:41 Download gff for
BO14574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17440-RA | 108..1223 | 7..1123 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:37 Download gff for
BO14574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17440-RA | 132..1229 | 17..1116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:29 Download gff for
BO14574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17440-RA | 108..1223 | 7..1123 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:16 Download gff for
BO14574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17440-RA | 132..1229 | 17..1116 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:16 Download gff for
BO14574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9268507..9268904 | 719..1116 | 99 | <- | Minus |
X | 9268971..9269514 | 175..718 | 100 | <- | Minus |
X | 9269577..9269710 | 41..174 | 100 | <- | Minus |
X | 9269771..9269794 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:37 Download gff for
BO14574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9163610..9163743 | 41..174 | 100 | <- | Minus |
arm_X | 9163804..9163827 | 17..40 | 100 | | Minus |
arm_X | 9162540..9162937 | 719..1116 | 99 | <- | Minus |
arm_X | 9163004..9163547 | 175..718 | 100 | <- | Minus |
BO14574.pep Sequence
Translation from 16 to 1132
> BO14574.pep
MTDNDKKTEEEIRREIAREFDLPERKSKIATILKQKDREYCICRSSDCSR
FMIGCDGCEEWYHGDCIEITEKDAEHIKNYYCRRCKKENPELQTIFRLVA
TERAAASNAASTSLNAPGVGPSGAAPAAAPVAPATTSQQAPPPTTAAAKR
KNSSAQEPKESQPTQAGTKRDKAAPKTSNVQVSPRAVSPEIFLNPELQGI
QQCHGPNCCSHARPQSKYCSDECGSNLAIERLFQILPQQMQEWNITPSRA
AEETRKHLELNMDELVLKQQEQLEEFEKQRQQIQTQQKQYQEKQKLMLQQ
QPQQQQQQQELQQQQELQQQQEQEQQQLLQQLHLKPHHVQQLQLQMQLLQ
QQRQLLQQQQHKPENPASFLDH
BO14574.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17440-PA | 366 | CG17440-PA | 1..366 | 1..366 | 1918 | 100 | Plus |
Cfp1-PB | 643 | CG17446-PB | 1..332 | 1..283 | 1155 | 70 | Plus |
Cfp1-PA | 663 | CG17446-PA | 24..352 | 2..283 | 1144 | 69.4 | Plus |
Cfp1-PB | 643 | CG17446-PB | 422..631 | 185..366 | 334 | 42.5 | Plus |
Cfp1-PA | 663 | CG17446-PA | 442..651 | 185..366 | 334 | 42.5 | Plus |
CG44085-PM | 864 | CG44085-PM | 146..393 | 105..363 | 230 | 31.7 | Plus |
CG44085-PO | 2381 | CG44085-PO | 146..393 | 105..363 | 230 | 31.7 | Plus |
CG44085-PM | 864 | CG44085-PM | 206..430 | 121..362 | 207 | 32.5 | Plus |