Clone BO14578 Report

Search the DGRC for BO14578

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:145
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG2577-RA
Protein status:BO14578.pep: validated full length
Sequenced Size:1066

Clone Sequence Records

BO14578.3prime Sequence

822 bp (771 high quality bases) assembled on 2006-05-29

> BO14578.3prime
ATGGTCTAGAAAGCTTGCCGGCCAGAAGTTGCACTTCTCATCTTTGATGA
TCGGCTCACCGCTGATACCATCATCTTCCTTCTGTTTAGGTGGAAATACA
CGCATTCCAATGCCAGGATTTTTCTGAGTATTGTGGAACTTCATCATCAG
CATGTCCCAGTCGTAGATGAGACCCGGCCGAAGATTGAGACCATTCCGCA
GCATCCGAAACATGCGGCAGATGAAGTCGTAGTTGGGCTTATCGTAGAAT
CCCATGCCGCGGCAGTAGTTTAAGTACATTGTGAACTCGCAGGGAAATCC
CTCGCAAAGTACCTCAATGCTTACCGAGATCTTTTTCTCATGTATGCGTT
CATATTTCTGCTGCTTGGTGGACGCCTTTAAATCCTGCCACGGCAGTGAT
CCCCGATTGAAGTACATAAGGACATAGCCAACGGCCACCATGTCATCCCT
TCTGGCGGATTCGACGCCGGCATGGGCGCCAATGGAGGCGTACCTGGCTG
TTCCCGTCAAGGAACGCTCCTCGCGATATGGTATATGGACACCAGTGGTT
ATGTCCAGATACTTCTTGGATAGCCCGAAATCGATGAGGTACACTTGCTT
GGACATGGTACCCAGACCCATCAGGAAGTTATCCGGCTTGATGTCGCGGT
GCAGGAATCCCCGGTTATGGACATACTCCACCCGGCGAAGCATCTGTTCG
GCCAGAAGCAGAACGGTCTTGATGGTGAATGCCCTTTCGCAGAACTGAAA
GAGTCTCTCCAGCGAGGGACCAAGCAGATCCATAACCATCGCCTGGTAAT
GCTCCTCCTTGTGGAAGTACCT

BO14578.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2577-PA 1035 CG2577-RA 229..1032 822..19 3995 99.8 Minus
CG2048-PA 1323 dco-RA 379..413 648..614 150 97.1 Minus
CG2048-PB 1323 dco-RB 379..413 648..614 150 97.1 Minus
CG2048-PC 1323 dco-RC 379..413 648..614 150 97.1 Minus
CG2028-PB 1014 CkIalpha-RB 412..443 648..617 135 96.8 Minus
CG2028-PC 1014 CkIalpha-RC 412..443 648..617 135 96.8 Minus
CG2028-PA 1014 CkIalpha-RA 412..443 648..617 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG2577-RA 1331 CG2577-RA 356..1159 822..19 4005 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12373473..12374276 822..19 4005 99.9 Minus
Blast to na_te.dros performed on 2015-02-11 09:47:06 has no hits.

BO14578.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:13 Download gff for BO14578.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2577-PA 229..1035 16..822 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:47 Download gff for BO14578.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2577-PA 229..1035 16..822 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:52:34 Download gff for BO14578.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2577-RA 356..1163 15..822 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:26 Download gff for BO14578.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2577-RA 356..1163 15..822 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:26 Download gff for BO14578.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12373473..12374280 15..822 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:52:34 Download gff for BO14578.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12267506..12268313 15..822 99   Minus

BO14578.5prime Sequence

809 bp (792 high quality bases) assembled on 2006-05-29

> BO14578.5prime
GAAGTTATCAGTCGACATGGAACGACTGCGCTCCTCCCAAAACCGCGAAG
TGCGAATCGGCAACTATAAGGTGGTGCGCAAGATCGGCTGTGGATCCTTC
GGCGATATATATCTGGGCATCTATATCCACAGTGGGGAGCGGGTGGCCAT
CAAGGTGGAAAGCAGCAAGGTGCGCCATCCGCAGCTCAACTACGAGAGGC
GAATCTACCGCGCCCTGAGGCCCGCCCACGGTTTGCCAAGGATTAGGTAC
TTCCACAAGGAGGAGCACTACCAGGCGATGGTTATGGATCTGCTTGGTCC
CTCGCTGGAGAGACTCTTTCAGTTCTGCGAAAGGGCATTCACCATCAAGA
CCGTTCTGCTTCTGGCCGAACAGATGCTTCGCCGGGTGGAGTATGTCCAT
AACCGGGGATTCCTGCACCGCGACATCAAGCCGGATAACTTCCTGATGGG
TCTGGGTACCATGTCCAAGCAAGTGTACCTCATCGATTTCGGGCTATCCA
AGAAGTATCTGGACATAACCACTGGTGTCCATATACCATATCGCGAGGAG
CGTTCCTTGACGGGAACAGCCAGGTACGCCTCCATTGGCGCCCATGCCGG
CGTCGAATCCGCCAGAAGGGATGACATGGTGGCCGTTGGCTATGTCCTTA
TGTACTTCAATCGGGGATCACTGCCGTGGCAGGATTTAAAGGCGTCCACC
AAGCAGCAGAAATATGAACGCATACATGAGAAAAAGATCTCGGTAAGCAT
TGAGGTACTTTGCGAGGGATTTCCCTGCGAGTTCACAATGTACTTAAACT
ACTGCCGCG

BO14578.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2577-PA 1035 CG2577-RA 1..793 17..809 3965 100 Plus
CG2048-PA 1323 dco-RA 379..413 419..453 150 97.1 Plus
CG2048-PB 1323 dco-RB 379..413 419..453 150 97.1 Plus
CG2048-PC 1323 dco-RC 379..413 419..453 150 97.1 Plus
CG2028-PB 1014 CkIalpha-RB 412..443 419..450 135 96.8 Plus
CG2028-PC 1014 CkIalpha-RC 412..443 419..450 135 96.8 Plus
CG2028-PA 1014 CkIalpha-RA 412..443 419..450 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG2577-RA 1331 CG2577-RA 128..920 17..809 3965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12373245..12374037 17..809 3965 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:55:55 has no hits.

BO14578.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:14 Download gff for BO14578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2577-PA 1..793 17..809 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:48 Download gff for BO14578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2577-PA 1..793 17..809 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:37:06 Download gff for BO14578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2577-RA 121..920 9..809 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:01 Download gff for BO14578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2577-RA 121..920 9..809 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:01 Download gff for BO14578.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12373238..12374037 9..809 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:37:06 Download gff for BO14578.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12267271..12268070 9..809 99   Plus

BO14578.complete Sequence

1066 bp assembled on 2006-10-11

GenBank Submission: FJ633184

> BO14578.complete
GAAGTTATCAGTCGACATGGAACGACTGCGCTCCTCCCAAAACCGCGAAG
TGCGAATCGGCAACTATAAGGTGGTGCGCAAGATCGGCTGTGGATCCTTC
GGCGATATATATCTGGGCATCTATATCCACAGTGGGGAGCGGGTGGCCAT
CAAGGTGGAAAGCAGCAAGGTGCGCCATCCGCAGCTCAACTACGAGAGGC
GAATCTACCGCGCCCTGAGGCCCGCCCACGGTTTGCCAAGGATTAGGTAC
TTCCACAAGGAGGAGCACTACCAGGCGATGGTTATGGATCTGCTTGGTCC
CTCGCTGGAGAGACTCTTTCAGTTCTGCGAAAGGGCATTCACCATCAAGA
CCGTTCTGCTTCTGGCCGAACAGATGCTTCGCCGGGTGGAGTATGTCCAT
AACCGGGGATTCCTGCACCGCGACATCAAGCCGGATAACTTCCTGATGGG
TCTGGGTACCATGTCCAAGCAAGTGTACCTCATCGATTTCGGGCTATCCA
AGAAGTATCTGGACATAACCACTGGTGTCCATATACCATATCGCGAGGAG
CGTTCCTTGACGGGAACAGCCAGGTACGCCTCCATTGGCGCCCATGCCGG
CGTCGAATCCGCCAGAAGGGATGACATGGTGGCCGTTGGCTATGTCCTTA
TGTACTTCAATCGGGGATCACTGCCGTGGCAGGATTTAAAGGCGTCCACC
AAGCAGCAGAAATATGAACGCATACATGAGAAAAAGATCTCGGTAAGCAT
TGAGGTACTTTGCGAGGGATTTCCCTGCGAGTTCACAATGTACTTAAACT
ACTGCCGCGGCATGGGATTCTACGATAAGCCCAACTACGACTTCATCTGC
CGCATGTTTCGGATGCTGCGGAATGGTCTCAATCTTCGGCCGGGTCTCAT
CTACGACTGGGACATGCTGATGATGAAGTTCCACAATACTCAGAAAAATC
CTGGCATTGGAATGCGTGTATTTCCACCTAAACAGAAGGAAGATGATGGT
ATCAGCGGTGAGCCGATCATCAAAGATGAGAAGTGCAACTTCTGGCCGGC
AAGCTTTCTAGACCAT

BO14578.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2577-RA 1035 CG2577-PA 1..1032 17..1048 5160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2577-RA 1331 CG2577-RA 128..1159 17..1048 5160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12373245..12374276 17..1048 5160 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:43:08 has no hits.

BO14578.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:31 Download gff for BO14578.complete
Subject Subject Range Query Range Percent Splice Strand
CG2577-RA 1..1035 17..1051 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:43 Download gff for BO14578.complete
Subject Subject Range Query Range Percent Splice Strand
CG2577-RA 28..1070 9..1052 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:11 Download gff for BO14578.complete
Subject Subject Range Query Range Percent Splice Strand
CG2577-RA 128..1159 17..1050 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:32 Download gff for BO14578.complete
Subject Subject Range Query Range Percent Splice Strand
CG2577-RA 28..1070 9..1052 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:46 Download gff for BO14578.complete
Subject Subject Range Query Range Percent Splice Strand
CG2577-RA 128..1159 17..1050 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:46 Download gff for BO14578.complete
Subject Subject Range Query Range Percent Splice Strand
X 12373245..12374276 17..1050 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:11 Download gff for BO14578.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12267278..12268309 17..1050 99   Plus

BO14578.pep Sequence

Translation from 16 to 1066

> BO14578.pep
MERLRSSQNREVRIGNYKVVRKIGCGSFGDIYLGIYIHSGERVAIKVESS
KVRHPQLNYERRIYRALRPAHGLPRIRYFHKEEHYQAMVMDLLGPSLERL
FQFCERAFTIKTVLLLAEQMLRRVEYVHNRGFLHRDIKPDNFLMGLGTMS
KQVYLIDFGLSKKYLDITTGVHIPYREERSLTGTARYASIGAHAGVESAR
RDDMVAVGYVLMYFNRGSLPWQDLKASTKQQKYERIHEKKISVSIEVLCE
GFPCEFTMYLNYCRGMGFYDKPNYDFICRMFRMLRNGLNLRPGLIYDWDM
LMMKFHNTQKNPGIGMRVFPPKQKEDDGISGEPIIKDEKCNFWPASFLDH

BO14578.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2577-PA 344 CG2577-PA 1..344 1..344 1840 100 Plus
CkIalpha-PG 337 CG2028-PG 4..337 1..337 1002 56.7 Plus
CkIalpha-PF 337 CG2028-PF 4..337 1..337 1002 56.7 Plus
CkIalpha-PD 337 CG2028-PD 4..337 1..337 1002 56.7 Plus
CkIalpha-PE 337 CG2028-PE 4..337 1..337 1002 56.7 Plus