Clone Sequence Records
BO14578.3prime Sequence
822 bp (771 high quality bases) assembled on 2006-05-29
> BO14578.3prime
ATGGTCTAGAAAGCTTGCCGGCCAGAAGTTGCACTTCTCATCTTTGATGA
TCGGCTCACCGCTGATACCATCATCTTCCTTCTGTTTAGGTGGAAATACA
CGCATTCCAATGCCAGGATTTTTCTGAGTATTGTGGAACTTCATCATCAG
CATGTCCCAGTCGTAGATGAGACCCGGCCGAAGATTGAGACCATTCCGCA
GCATCCGAAACATGCGGCAGATGAAGTCGTAGTTGGGCTTATCGTAGAAT
CCCATGCCGCGGCAGTAGTTTAAGTACATTGTGAACTCGCAGGGAAATCC
CTCGCAAAGTACCTCAATGCTTACCGAGATCTTTTTCTCATGTATGCGTT
CATATTTCTGCTGCTTGGTGGACGCCTTTAAATCCTGCCACGGCAGTGAT
CCCCGATTGAAGTACATAAGGACATAGCCAACGGCCACCATGTCATCCCT
TCTGGCGGATTCGACGCCGGCATGGGCGCCAATGGAGGCGTACCTGGCTG
TTCCCGTCAAGGAACGCTCCTCGCGATATGGTATATGGACACCAGTGGTT
ATGTCCAGATACTTCTTGGATAGCCCGAAATCGATGAGGTACACTTGCTT
GGACATGGTACCCAGACCCATCAGGAAGTTATCCGGCTTGATGTCGCGGT
GCAGGAATCCCCGGTTATGGACATACTCCACCCGGCGAAGCATCTGTTCG
GCCAGAAGCAGAACGGTCTTGATGGTGAATGCCCTTTCGCAGAACTGAAA
GAGTCTCTCCAGCGAGGGACCAAGCAGATCCATAACCATCGCCTGGTAAT
GCTCCTCCTTGTGGAAGTACCT
BO14578.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2577-PA | 1035 | CG2577-RA | 229..1032 | 822..19 | 3995 | 99.8 | Minus |
CG2048-PA | 1323 | dco-RA | 379..413 | 648..614 | 150 | 97.1 | Minus |
CG2048-PB | 1323 | dco-RB | 379..413 | 648..614 | 150 | 97.1 | Minus |
CG2048-PC | 1323 | dco-RC | 379..413 | 648..614 | 150 | 97.1 | Minus |
CG2028-PB | 1014 | CkIalpha-RB | 412..443 | 648..617 | 135 | 96.8 | Minus |
CG2028-PC | 1014 | CkIalpha-RC | 412..443 | 648..617 | 135 | 96.8 | Minus |
CG2028-PA | 1014 | CkIalpha-RA | 412..443 | 648..617 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2577-RA | 1331 | CG2577-RA | 356..1159 | 822..19 | 4005 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12373473..12374276 | 822..19 | 4005 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:47:06 has no hits.
BO14578.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:13 Download gff for
BO14578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-PA | 229..1035 | 16..822 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:47 Download gff for
BO14578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-PA | 229..1035 | 16..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:52:34 Download gff for
BO14578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-RA | 356..1163 | 15..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:26 Download gff for
BO14578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-RA | 356..1163 | 15..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:26 Download gff for
BO14578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12373473..12374280 | 15..822 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:52:34 Download gff for
BO14578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12267506..12268313 | 15..822 | 99 | | Minus |
BO14578.5prime Sequence
809 bp (792 high quality bases) assembled on 2006-05-29
> BO14578.5prime
GAAGTTATCAGTCGACATGGAACGACTGCGCTCCTCCCAAAACCGCGAAG
TGCGAATCGGCAACTATAAGGTGGTGCGCAAGATCGGCTGTGGATCCTTC
GGCGATATATATCTGGGCATCTATATCCACAGTGGGGAGCGGGTGGCCAT
CAAGGTGGAAAGCAGCAAGGTGCGCCATCCGCAGCTCAACTACGAGAGGC
GAATCTACCGCGCCCTGAGGCCCGCCCACGGTTTGCCAAGGATTAGGTAC
TTCCACAAGGAGGAGCACTACCAGGCGATGGTTATGGATCTGCTTGGTCC
CTCGCTGGAGAGACTCTTTCAGTTCTGCGAAAGGGCATTCACCATCAAGA
CCGTTCTGCTTCTGGCCGAACAGATGCTTCGCCGGGTGGAGTATGTCCAT
AACCGGGGATTCCTGCACCGCGACATCAAGCCGGATAACTTCCTGATGGG
TCTGGGTACCATGTCCAAGCAAGTGTACCTCATCGATTTCGGGCTATCCA
AGAAGTATCTGGACATAACCACTGGTGTCCATATACCATATCGCGAGGAG
CGTTCCTTGACGGGAACAGCCAGGTACGCCTCCATTGGCGCCCATGCCGG
CGTCGAATCCGCCAGAAGGGATGACATGGTGGCCGTTGGCTATGTCCTTA
TGTACTTCAATCGGGGATCACTGCCGTGGCAGGATTTAAAGGCGTCCACC
AAGCAGCAGAAATATGAACGCATACATGAGAAAAAGATCTCGGTAAGCAT
TGAGGTACTTTGCGAGGGATTTCCCTGCGAGTTCACAATGTACTTAAACT
ACTGCCGCG
BO14578.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2577-PA | 1035 | CG2577-RA | 1..793 | 17..809 | 3965 | 100 | Plus |
CG2048-PA | 1323 | dco-RA | 379..413 | 419..453 | 150 | 97.1 | Plus |
CG2048-PB | 1323 | dco-RB | 379..413 | 419..453 | 150 | 97.1 | Plus |
CG2048-PC | 1323 | dco-RC | 379..413 | 419..453 | 150 | 97.1 | Plus |
CG2028-PB | 1014 | CkIalpha-RB | 412..443 | 419..450 | 135 | 96.8 | Plus |
CG2028-PC | 1014 | CkIalpha-RC | 412..443 | 419..450 | 135 | 96.8 | Plus |
CG2028-PA | 1014 | CkIalpha-RA | 412..443 | 419..450 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2577-RA | 1331 | CG2577-RA | 128..920 | 17..809 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12373245..12374037 | 17..809 | 3965 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:55:55 has no hits.
BO14578.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:14 Download gff for
BO14578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-PA | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:48 Download gff for
BO14578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-PA | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:37:06 Download gff for
BO14578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-RA | 121..920 | 9..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:01 Download gff for
BO14578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-RA | 121..920 | 9..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:01 Download gff for
BO14578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12373238..12374037 | 9..809 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:37:06 Download gff for
BO14578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12267271..12268070 | 9..809 | 99 | | Plus |
BO14578.complete Sequence
1066 bp assembled on 2006-10-11
GenBank Submission: FJ633184
> BO14578.complete
GAAGTTATCAGTCGACATGGAACGACTGCGCTCCTCCCAAAACCGCGAAG
TGCGAATCGGCAACTATAAGGTGGTGCGCAAGATCGGCTGTGGATCCTTC
GGCGATATATATCTGGGCATCTATATCCACAGTGGGGAGCGGGTGGCCAT
CAAGGTGGAAAGCAGCAAGGTGCGCCATCCGCAGCTCAACTACGAGAGGC
GAATCTACCGCGCCCTGAGGCCCGCCCACGGTTTGCCAAGGATTAGGTAC
TTCCACAAGGAGGAGCACTACCAGGCGATGGTTATGGATCTGCTTGGTCC
CTCGCTGGAGAGACTCTTTCAGTTCTGCGAAAGGGCATTCACCATCAAGA
CCGTTCTGCTTCTGGCCGAACAGATGCTTCGCCGGGTGGAGTATGTCCAT
AACCGGGGATTCCTGCACCGCGACATCAAGCCGGATAACTTCCTGATGGG
TCTGGGTACCATGTCCAAGCAAGTGTACCTCATCGATTTCGGGCTATCCA
AGAAGTATCTGGACATAACCACTGGTGTCCATATACCATATCGCGAGGAG
CGTTCCTTGACGGGAACAGCCAGGTACGCCTCCATTGGCGCCCATGCCGG
CGTCGAATCCGCCAGAAGGGATGACATGGTGGCCGTTGGCTATGTCCTTA
TGTACTTCAATCGGGGATCACTGCCGTGGCAGGATTTAAAGGCGTCCACC
AAGCAGCAGAAATATGAACGCATACATGAGAAAAAGATCTCGGTAAGCAT
TGAGGTACTTTGCGAGGGATTTCCCTGCGAGTTCACAATGTACTTAAACT
ACTGCCGCGGCATGGGATTCTACGATAAGCCCAACTACGACTTCATCTGC
CGCATGTTTCGGATGCTGCGGAATGGTCTCAATCTTCGGCCGGGTCTCAT
CTACGACTGGGACATGCTGATGATGAAGTTCCACAATACTCAGAAAAATC
CTGGCATTGGAATGCGTGTATTTCCACCTAAACAGAAGGAAGATGATGGT
ATCAGCGGTGAGCCGATCATCAAAGATGAGAAGTGCAACTTCTGGCCGGC
AAGCTTTCTAGACCAT
BO14578.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2577-RA | 1035 | CG2577-PA | 1..1032 | 17..1048 | 5160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:43:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2577-RA | 1331 | CG2577-RA | 128..1159 | 17..1048 | 5160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12373245..12374276 | 17..1048 | 5160 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:43:08 has no hits.
BO14578.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:31 Download gff for
BO14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-RA | 1..1035 | 17..1051 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:43 Download gff for
BO14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-RA | 28..1070 | 9..1052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:11 Download gff for
BO14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-RA | 128..1159 | 17..1050 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:32 Download gff for
BO14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-RA | 28..1070 | 9..1052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:46 Download gff for
BO14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2577-RA | 128..1159 | 17..1050 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:46 Download gff for
BO14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12373245..12374276 | 17..1050 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:11 Download gff for
BO14578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12267278..12268309 | 17..1050 | 99 | | Plus |
BO14578.pep Sequence
Translation from 16 to 1066
> BO14578.pep
MERLRSSQNREVRIGNYKVVRKIGCGSFGDIYLGIYIHSGERVAIKVESS
KVRHPQLNYERRIYRALRPAHGLPRIRYFHKEEHYQAMVMDLLGPSLERL
FQFCERAFTIKTVLLLAEQMLRRVEYVHNRGFLHRDIKPDNFLMGLGTMS
KQVYLIDFGLSKKYLDITTGVHIPYREERSLTGTARYASIGAHAGVESAR
RDDMVAVGYVLMYFNRGSLPWQDLKASTKQQKYERIHEKKISVSIEVLCE
GFPCEFTMYLNYCRGMGFYDKPNYDFICRMFRMLRNGLNLRPGLIYDWDM
LMMKFHNTQKNPGIGMRVFPPKQKEDDGISGEPIIKDEKCNFWPASFLDH
BO14578.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2577-PA | 344 | CG2577-PA | 1..344 | 1..344 | 1840 | 100 | Plus |
CkIalpha-PG | 337 | CG2028-PG | 4..337 | 1..337 | 1002 | 56.7 | Plus |
CkIalpha-PF | 337 | CG2028-PF | 4..337 | 1..337 | 1002 | 56.7 | Plus |
CkIalpha-PD | 337 | CG2028-PD | 4..337 | 1..337 | 1002 | 56.7 | Plus |
CkIalpha-PE | 337 | CG2028-PE | 4..337 | 1..337 | 1002 | 56.7 | Plus |