Clone Sequence Records
BO14580.complete Sequence
2464 bp assembled on 2010-04-13
GenBank Submission: KX795230
> BO14580.complete
GAAGTTATCAGTCGACATGAGCCGCCAACACCAGCGGCACCACCAGCAGC
ATCACCACCTGCCGCCGCACCAGCAACCGCAGCAGCAGATGCCGCAACAA
CAGCAGCAGCTGACGGCGCAGCAGCAGCAACAACAGCAGCTGCTGATGGC
GGAGCACGCGGCGGCCGCGGAGGCGGCGGAGCTATTCGACCTGCTGTGCG
TGGCCACAACGATGCGCCAGATCCTGGCGCTCCATCGGGCCATGTGCGAG
GCTGTGGGATTGAGACCCTCGCCTCTGAACGACTTCTACCCACGGCTAAA
GGCCAAGGTGCGTTCGTGGAAGGCGCAGGCCCTGTGGAAGAAGTTCGACG
CCAGAGCTGCCCATAGAGTCTACGGCAAGGGAGCTGCCTGTACTGGCACA
CGCGTCCTGGTCATCGGAGCAGGGCCCTGTGGACTGCGCACCGCCATCGA
GGCCCAACTGCTGGGCGCCAAGGTGGTGGTGCTGGAGAAACGCGATCGCA
TCACCCGGAACAATGTGCTCCATCTGTGGCCATTCGTCATCACGGATCTG
CGCAACTTGGGCGCAAAGAAGTTCTACGGCAAGTTTTGCGCCGGCTCCAT
CGATCACATCTCCATTCGGCAGCTGCAGTGCATGCTGCTCAAGGTGGCGC
TGCTCCTGGGCGTAGAGATCCACGAGGGAGTCAGTTTTGATCACGCTGTA
GAGCCCTCTGGCGATGGCGGCGGATGGAGGGCAGCTGTTACTCCCGCAGA
TCATCCTGTATCTCACTACGAATTCGATGTGTTGATCGGAGCGGATGGCA
AGCGGAATATGCTGGACTTTAGGAGGAAGGAGTTCCGCGGGAAGCTGGCC
ATCGCTATTACAGCGAACTTTATCAACAAGAAGACGGAGGCGGAGGCTAA
AGTAGAGGAGATCAGTGGGGTGGCTTTCATCTTCAACCAGGCCTTCTTCA
AGGAGCTGTACGGGAAGACGGGCATCGACCTGGAAAACATCGTCTACTAC
AAGGACGAGACGCACTACTTCGTGATGACGGCCAAGAAGCACAGTCTAAT
TGACAAGGGCGTTATTATCGAGGATATGGCCGATCCCGGCGAGCTTCTCG
CCCCTGCCAATGTGGATACACAAAAGCTGCACGACTATGCACGCGAGGCT
GCGGAGTTCTCCACCCAATACCAAATGCCAAACCTGGAGTTCGCTGTTAA
TCACTACGGCAAACCAGATGTGGCCATGTTCGACTTCACATCGATGTTTG
CCGCCGAGATGTCCTGTCGGGTGATTGTGCGCAAAGGAGCTCGCCTGATG
CAGTGCCTCGTGGGTGACAGTCTGCTCGAGCCGTTTTGGCCCACTGGATC
GGGTTGTGCCCGTGGATTCTTATCCAGCATGGATGCTGCCTATGCCATCA
AGCTTTGGTCCAACCCGCAGAACAGCACACTTGGCGTTCTGGCGCAGCGC
GAAAGCATCTACCGGCTGCTTAACCAGACCACGCCGGACACCCTGCAGCG
GGACATCAGTGCCTATACCGTGGATCCGGCCACGCGCTATCCGAATCTGA
ACAGGGAGTCGGTCAATAGCTGGCAGGTCAAACATCTGGTCGACACGGAC
GACCCGTCCATTCTGGAGCAGACCTTCATGGACACGCATGCTCTGCAGAC
CCCGCATTTGGACACACCGGGCAGACGCAAGCGACGCAGTGGAGACTTGC
TGCCCCAGGGTGCCACGTTGCTGAGATGGATAAGTGCCCAGCTGCATTCC
TATCAGTTTATTCCCGAACTCAAGGAGGCTTCGGATGTGTTCCGGAATGG
ACGCGTTCTGTGTGCGCTTATCAATCGCTATCGTCCTGATCTCATCGACT
ACGCTGCCACCAAGGACATGAGTCCCGTGGAGTGCAATGAGCTGTCATTC
GCCGTCCTAGAGCGCGAACTCCACATCGATCGCGTCATGAGTGCCAAACA
GTCGCTGGACTTGACCGAGCTGGAGTCGCGAATCTGGCTCAACTATTTGG
ACCAGATCTGCGACTTGTTTCGCGGCGAGATCCCCCATATCAAGCACCCC
AAGATGGACTTTAGCGATTTGCGCCAGAAGTATCGTATCAACCATACGCA
TGCCCAACCCGACTTCTCCAAGCTGCTGGCAACGAAACCCAAGGCCAAGT
CGCCGATGCAGGATGCTGTGGACATACCCACGACAGTGCAGCGGCGCTCG
GTGCTCGAGGAGGAGCGAGCCAAGCGGCAGCGTCGCCACGAGCAGCTTCT
TAACATCGGTGGAGGGGCAGCAGGAGCCGCCGCCGGAGTTGCCGGAAGCG
GGACAGGAACCACAACGCAGGGTCAAAACGATACGCCACGCCGGTCCAAG
AAGCGCCGTCAGGTTGACAAAACCGCCAATATTGTGAGTAAATGCTGGCA
TTATTTTATATCATGGATTGGTTCATACGCGAATGTGCAGAAGGTCGCAA
GCTTTCTAGACCAT
BO14580.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:42:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mical-RA | 2433 | CG33208-PA | 1..2430 | 17..2446 | 12135 | 100 | Plus |
| Mical-RQ | 8976 | CG33208-PQ | 1..2368 | 17..2384 | 11825 | 100 | Plus |
| Mical-RP | 14070 | CG33208-PP | 1..2368 | 17..2384 | 11825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:42:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mical-RA | 2806 | CG33208-RA | 186..2615 | 17..2446 | 12135 | 100 | Plus |
| Mical-RQ | 10116 | CG33208-RQ | 260..2627 | 17..2384 | 11825 | 100 | Plus |
| Mical-RP | 15210 | CG33208-RP | 260..2627 | 17..2384 | 11825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:42:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10019705..10021382 | 1694..17 | 8375 | 99.9 | Minus |
| 3R | 32079331 | 3R | 10018939..10019436 | 2324..1827 | 2490 | 100 | Minus |
| 3R | 32079331 | 3R | 10019509..10019643 | 1827..1693 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 10018434..10018559 | 2446..2321 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:42:50 has no hits.
BO14580.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:26:03 Download gff for
BO14580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mical-RA | 186..2615 | 17..2448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:22 Download gff for
BO14580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mical-RA | 186..2615 | 17..2448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:07 Download gff for
BO14580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mical-RA | 186..2615 | 17..2448 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:07 Download gff for
BO14580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10018431..10018558 | 2322..2448 | 98 | <- | Minus |
| 3R | 10018942..10019435 | 1828..2321 | 100 | <- | Minus |
| 3R | 10019509..10019641 | 1695..1827 | 100 | <- | Minus |
| 3R | 10019705..10021382 | 17..1694 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:22 Download gff for
BO14580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5844153..5844280 | 2322..2448 | 98 | <- | Minus |
| arm_3R | 5844664..5845157 | 1828..2321 | 100 | <- | Minus |
| arm_3R | 5845231..5845363 | 1695..1827 | 100 | <- | Minus |
| arm_3R | 5845427..5847104 | 17..1694 | 99 | | Minus |
BO14580.3prime Sequence
848 bp (819 high quality bases) assembled on 2006-05-29
> BO14580.3prime
ATGGTCTAGAAAGCTTGCGACCTTCTGCACATTCGCGTATGAACCAATCC
ATGATATAAAATAATGCCAGCATTTACTCACAATATTGGCGGTTTTGTCA
ACCTGACGGCGCTTCTTGGACCGGCGTGGCGTATCGTTTTGACCCTGCGT
TGTGGTTCCTGTCCCGCTTCCGGCAACTCCGGCGGCGGCTCCTGCTGCCC
CTCCACCGATGTTAAGAAGCTGCTCGTGGCGACGCTGCCGCTTGGCTCGC
TCCTCCTCGAGCACCGAGCGCCGCTGCACTGTCGTGGGTATGTCCACAGC
ATCCTGCATCGGCGACTTGGCCTTGGGTTTCGTTGCCAGCAGCTTGGAGA
AGTCGGGTTGGGCATGCGTATGGTTGATACGATACTTCTGGCGCAAATCG
CTAAAGTCCATCTTGGGGTGCTTGATATGGGGGATCTCGCCGCGAAACAA
GTCGCAGATCTGGTCCAAATAGTTGAGCCAGATTCGCGACTCCAGCTCGG
TCAAGTCCAGCGACTGTTTGGCACTCATGACGCGATCGATGTGGAGTTCG
CGCTCTAGGACGGCGAATGACAGCTCATTGCACTCCACGGGACTCATGTC
CTTGGTGGCAGCGTAGTCGATGAGATCAGGACGATAGCGATTGATAAGCG
CACACAGAACGCGTCCATTCCGGAACACATCCGAAGCCTCCTTGAGTTCG
GGAATAAACTGATAGGAATGCAGCTGGGCACTTATCCATCTCAGCAACGT
GGCACCCTGGGGCAGCAAGTCTCCACTGCGTCGCTTGCGTCTGCCCGGTG
TGTCCAAATGCGGGGTCTGCAGAGCATGCGTGTCCATGAAGGTCTGCT
BO14580.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33208-PA | 2433 | MICAL-RA | 1601..2430 | 848..19 | 4150 | 100 | Minus |
| CG33208-PC | 14172 | MICAL-RC | 1601..2368 | 848..81 | 3840 | 100 | Minus |
| CG33208-PH | 14172 | MICAL-RH | 1601..2368 | 848..81 | 3840 | 100 | Minus |
| CG33208-PG | 14172 | MICAL-RG | 1601..2368 | 848..81 | 3840 | 100 | Minus |
| CG33208-PD | 14172 | MICAL-RD | 1601..2368 | 848..81 | 3840 | 100 | Minus |
| CG33208-PB | 9009 | MICAL-RB | 1601..2368 | 848..81 | 3840 | 100 | Minus |
| CG33208-PF | 14172 | MICAL-RF | 1601..2368 | 848..81 | 3840 | 100 | Minus |
| CG33208-PE | 8205 | MICAL-RE | 1601..2367 | 848..82 | 3835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mical-RA | 2806 | CG33208-RA | 1786..2615 | 848..19 | 4150 | 100 | Minus |
| Mical-RQ | 10116 | CG33208-RQ | 1860..2627 | 848..81 | 3840 | 100 | Minus |
| Mical-RP | 15210 | CG33208-RP | 1860..2627 | 848..81 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10018939..10019436 | 141..638 | 2490 | 100 | Plus |
| 3R | 32079331 | 3R | 10019509..10019643 | 638..772 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 10018434..10018559 | 19..144 | 630 | 100 | Plus |
| 3R | 32079331 | 3R | 10019705..10019782 | 771..848 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:50:27 has no hits.
BO14580.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:17 Download gff for
BO14580.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MICAL-PA | 1601..2433 | 16..848 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:52 Download gff for
BO14580.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33208-PA | 1601..2433 | 16..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:02:41 Download gff for
BO14580.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mical-RA | 1786..2623 | 11..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:15:26 Download gff for
BO14580.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mical-RA | 1786..2623 | 11..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:15:26 Download gff for
BO14580.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10018426..10018558 | 11..143 | 96 | <- | Plus |
| 3R | 10018942..10019435 | 144..637 | 100 | <- | Plus |
| 3R | 10019509..10019641 | 638..770 | 100 | <- | Plus |
| 3R | 10019705..10019782 | 771..848 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:02:41 Download gff for
BO14580.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5844148..5844280 | 11..143 | 96 | <- | Plus |
| arm_3R | 5844664..5845157 | 144..637 | 100 | <- | Plus |
| arm_3R | 5845231..5845363 | 638..770 | 100 | <- | Plus |
| arm_3R | 5845427..5845504 | 771..848 | 100 | | Plus |
BO14580.5prime Sequence
816 bp (718 high quality bases) assembled on 2006-05-29
> BO14580.5prime
GAAGTTATCAGTCGACATGAGCCGCCAACACCAGCGGCACCACCAGCAGC
ATCACCACCTGCCGCCGCACCAGCAACCGCAGCAGCAGATGCCGCAACAA
CAGCAGCAGCTGACGGCGCAGCAGCAGCAACAACAGCAGCTGCTGATGGC
GGAGCACGCGGCGGCCGCGGAGGCGGCGGAGCTATTCGACCTGCTGTGCG
TGGCCACAACGATGCGCCAGATCCTGGCGCTCCATCGGGCCATGTGCGAG
GCTGTGGGATTGAGACCCTCGCCTCTGAACGACTTCTACCCACGGCTAAA
GGCCAAGGTGCGTTCGTGGAAGGCGCAGGCCCTGTGGAAGAAGTTCGACG
CCAGAGCTGCCCATAGAGTCTACGGCAAGGGAGCTGCCTGTACTGGCACA
CGCGTCCTGGTCATCGGAGCAGGGCCCTGTGGACTGCGCACCGCCATCGA
GGCCCAACTGCTGGGCGCCAAGGTGGTGGTGCTGGAGAAACGCGATCGCA
TCACCCGGAACAATGTGCTCCATCTGTGGCCATTCGTCATCACGGATCTG
CGCAACTTGGGCGCAAAGAAGTTCTACGGCAAGTTTTGCGCCGGCTCCAT
CGATCACATCTCCATTCGGCAGCTGCAGTGCATGCTGCTCAAGGTGGCGC
TGCTCCTGGGCGTAGAGATCCACGAGGGAGTCAGTTTTGATCACGCTGTA
GAGCCCTCTGGCGATGGCGGCGGATGGAGGGCAGCTGTTACTCCCGCAGA
TCATCCTGTATCTCACTACGAATTCGATGTGTTGATCGGAGCGGATGGGC
AGCGGAATATGCTGGA
BO14580.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33208-PC | 14172 | MICAL-RC | 1..800 | 17..816 | 3950 | 99.7 | Plus |
| CG33208-PH | 14172 | MICAL-RH | 1..800 | 17..816 | 3950 | 99.7 | Plus |
| CG33208-PG | 14172 | MICAL-RG | 1..800 | 17..816 | 3950 | 99.7 | Plus |
| CG33208-PD | 14172 | MICAL-RD | 1..800 | 17..816 | 3950 | 99.7 | Plus |
| CG33208-PA | 2433 | MICAL-RA | 1..800 | 17..816 | 3950 | 99.7 | Plus |
| CG33208-PB | 9009 | MICAL-RB | 1..800 | 17..816 | 3950 | 99.7 | Plus |
| CG33208-PE | 8205 | MICAL-RE | 1..800 | 17..816 | 3950 | 99.7 | Plus |
| CG33208-PF | 14172 | MICAL-RF | 1..800 | 17..816 | 3950 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:13:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mical-RL | 15345 | CG33208-RL | 233..1032 | 17..816 | 3970 | 99.8 | Plus |
| Mical-RK | 15264 | CG33208-RK | 185..984 | 17..816 | 3970 | 99.8 | Plus |
| Mical-RQ | 10116 | CG33208-RQ | 260..1059 | 17..816 | 3970 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:13:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10020583..10021382 | 816..17 | 3970 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-02 08:13:39 has no hits.
BO14580.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:18 Download gff for
BO14580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MICAL-PC | 1..799 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:54 Download gff for
BO14580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33208-PF | 1..799 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:47:06 Download gff for
BO14580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mical-RK | 178..983 | 10..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:18:36 Download gff for
BO14580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mical-RQ | 253..1058 | 10..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:18:36 Download gff for
BO14580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10020584..10021384 | 14..815 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:47:06 Download gff for
BO14580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5846306..5847106 | 14..815 | 99 | | Minus |
BO14580.pep Sequence
Translation from 16 to 2464
> BO14580.pep
MSRQHQRHHQQHHHLPPHQQPQQQMPQQQQQLTAQQQQQQQLLMAEHAAA
AEAAELFDLLCVATTMRQILALHRAMCEAVGLRPSPLNDFYPRLKAKVRS
WKAQALWKKFDARAAHRVYGKGAACTGTRVLVIGAGPCGLRTAIEAQLLG
AKVVVLEKRDRITRNNVLHLWPFVITDLRNLGAKKFYGKFCAGSIDHISI
RQLQCMLLKVALLLGVEIHEGVSFDHAVEPSGDGGGWRAAVTPADHPVSH
YEFDVLIGADGKRNMLDFRRKEFRGKLAIAITANFINKKTEAEAKVEEIS
GVAFIFNQAFFKELYGKTGIDLENIVYYKDETHYFVMTAKKHSLIDKGVI
IEDMADPGELLAPANVDTQKLHDYAREAAEFSTQYQMPNLEFAVNHYGKP
DVAMFDFTSMFAAEMSCRVIVRKGARLMQCLVGDSLLEPFWPTGSGCARG
FLSSMDAAYAIKLWSNPQNSTLGVLAQRESIYRLLNQTTPDTLQRDISAY
TVDPATRYPNLNRESVNSWQVKHLVDTDDPSILEQTFMDTHALQTPHLDT
PGRRKRRSGDLLPQGATLLRWISAQLHSYQFIPELKEASDVFRNGRVLCA
LINRYRPDLIDYAATKDMSPVECNELSFAVLERELHIDRVMSAKQSLDLT
ELESRIWLNYLDQICDLFRGEIPHIKHPKMDFSDLRQKYRINHTHAQPDF
SKLLATKPKAKSPMQDAVDIPTTVQRRSVLEEERAKRQRRHEQLLNIGGG
AAGAAAGVAGSGTGTTTQGQNDTPRRSKKRRQVDKTANIVSKCWHYFISW
IGSYANVQKVASFLDH
BO14580.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:22:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mical-PA | 810 | CG33208-PA | 1..810 | 1..810 | 4242 | 100 | Plus |
| Mical-PE | 2734 | CG33208-PE | 1..792 | 1..792 | 4127 | 99.9 | Plus |
| Mical-PL | 4743 | CG33208-PL | 1..790 | 1..790 | 4121 | 99.9 | Plus |
| Mical-PK | 4732 | CG33208-PK | 1..790 | 1..790 | 4121 | 99.9 | Plus |
| Mical-PQ | 2991 | CG33208-PQ | 1..789 | 1..789 | 4120 | 100 | Plus |
