Clone Sequence Records
BO14586.5prime Sequence
584 bp (583 high quality bases) assembled on 2006-05-29
> BO14586.5prime
GAAGTTATCAGTCGACATGACTAGGAGCAGCATCGAACTGGGCGACGTGA
CGCCCCACAACATCAAGCAGCTAAAGAAGCTCAACACCGTGGTTTTCCCG
GTCTCCTACAATGACAAGTTTTACGTGGACGTCCTGGAGGCCGGCGAACT
GGCCAAATTGGCCTACTACAACGACATTGTAGTGGGCGCCGTCTGCTGTC
GCATCGACAACACTGAGAACCAGCGGCGCCTGTATATCATGACCCTAGGA
TGCCTCTCCCCGTACCGGCGCCTGGGCATCGGCACAGTTATGTTCGAGCA
CATTATGAACTTCGCCGAGAAGGACGGAAACTTCGACAGCATTTTTCTAC
ATGTGCAAATCAACAACAACGGAGCCATCGAGTTCTATAAGAAGTTTGGT
TTCGAGATTGTTGACACCAAGGAGCAATACTATAAGCGCATCGAGCCGGC
GGACGCTCATGTACTGCAAAAGACTCTGCGCCGCACTGCACCCAACTCAA
ACAGCACCGCCACCAGCACCACCGCGAACTCAAATTCACGTAGTAAAGCA
CGACAGTTCACATTTGTTGCAAGCTTTCTAGACC
BO14586.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12352-PA | 555 | san-RA | 1..552 | 17..568 | 2735 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:26:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
san-RA | 808 | CG12352-RA | 118..671 | 15..568 | 2755 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11360957..11361282 | 23..348 | 1615 | 99.7 | Plus |
2R | 25286936 | 2R | 11361515..11361734 | 349..568 | 1100 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:26:26 has no hits.
BO14586.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:26 Download gff for
BO14586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
san-PA | 1..555 | 17..572 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:07 Download gff for
BO14586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12352-PA | 1..555 | 17..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:31:07 Download gff for
BO14586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
san-RA | 110..676 | 6..573 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:37:24 Download gff for
BO14586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
san-RA | 110..676 | 6..573 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:37:24 Download gff for
BO14586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11361515..11361739 | 349..573 | 99 | | Plus |
2R | 11360950..11361282 | 13..348 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:31:07 Download gff for
BO14586.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7248455..7248787 | 13..348 | 98 | -> | Plus |
arm_2R | 7249020..7249244 | 349..573 | 99 | | Plus |
BO14586.complete Sequence
586 bp assembled on 2007-10-29
GenBank Submission: FJ633185
> BO14586.complete
GAAGTTATCAGTCGACATGACTAGGAGCAGCATCGAACTGGGCGACGTGA
CGCCCCACAACATCAAGCAGCTAAAGAAGCTCAACACCGTGGTTTTCCCG
GTCTCCTACAATGACAAGTTTTACGTGGACGTCCTGGAGGCCGGCGAACT
GGCCAAATTGGCCTACTACAACGACATTGTAGTGGGCGCCGTCTGCTGTC
GCATCGACAACACTGAGAACCAGCGGCGCCTGTATATCATGACCCTAGGA
TGCCTCTCCCCGTACCGGCGCCTGGGCATCGGCACAGTTATGTTCGAGCA
CATTATGAACTTCGCCGAGAAGGACGGAAACTTCGACAGCATTTTTCTAC
ATGTGCAAATCAACAACAACGGAGCCATCGAGTTCTATAAGAAGTTTGGT
TTCGAGATTGTTGACACCAAGGAGCAATACTATAAGCGCATCGAGCCGGC
GGACGCTCATGTACTGCAAAAGACTCTGCGCCGCACTGCACCCAACTCAA
ACAGCACCGCCACCAGCACCACCGCGAACTCAAATTCACGTAGTAAAGCA
CGACAGTTCACATTTGTTGCAAGCTTTCTAGACCAT
BO14586.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
san-RA | 555 | CG12352-PA | 1..552 | 17..568 | 2745 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
san-RA | 808 | CG12352-RA | 118..671 | 15..568 | 2755 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11360957..11361282 | 23..348 | 1615 | 99.7 | Plus |
2R | 25286936 | 2R | 11361515..11361734 | 349..568 | 1100 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:36:52 has no hits.
BO14586.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:26 Download gff for
BO14586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
san-RA | 1..555 | 17..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:40 Download gff for
BO14586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
san-RA | 118..684 | 6..573 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:37 Download gff for
BO14586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
san-RA | 120..671 | 17..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:16 Download gff for
BO14586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
san-RA | 128..679 | 17..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:56 Download gff for
BO14586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
san-RA | 120..671 | 17..570 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:56 Download gff for
BO14586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11360953..11361282 | 17..348 | 98 | -> | Plus |
2R | 11361515..11361734 | 349..570 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:37 Download gff for
BO14586.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7248458..7248787 | 17..348 | 98 | -> | Plus |
arm_2R | 7249020..7249239 | 349..570 | 99 | | Plus |
BO14586.pep Sequence
Translation from 16 to 586
> BO14586.pep
MTRSSIELGDVTPHNIKQLKKLNTVVFPVSYNDKFYVDVLEAGELAKLAY
YNDIVVGAVCCRIDNTENQRRLYIMTLGCLSPYRRLGIGTVMFEHIMNFA
EKDGNFDSIFLHVQINNNGAIEFYKKFGFEIVDTKEQYYKRIEPADAHVL
QKTLRRTAPNSNSTATSTTANSNSRSKARQFTFVASFLDH
BO14586.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
san-PA | 184 | CG12352-PA | 1..184 | 1..184 | 954 | 100 | Plus |