Clone BO14588 Report

Search the DGRC for BO14588

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:145
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptCG33937-RA
Protein status:BO14588.pep: validated full length
Sequenced Size:409

Clone Sequence Records

BO14588.3prime Sequence

407 bp (406 high quality bases) assembled on 2006-05-29

> BO14588.3prime
ATGGTCTAGAAAGCTTGCGCATTCGCTGTGTGGCGTTGAGTGGCGTTTTT
TCGGCTTTAGCAGAGCACCGTCAACTGTACAACTGTTGCCAAGAATACGT
ATCGAATCGGCCGAGTGAGAATCTATTTTGTGAGGAAAACAAGAGTGGCG
ATGCGATGATGATGTGTTGTGGTTAATGTTTACCCGCTTCTTAGTTACGG
CAACATCCGATGCGCCTTCTAAAACCACATCAGCCATCTTTACACTGCCT
ACATCGCCCCCATCAGGAGACACACTTCGACGACGCTTTTCCCGTTGAAC
CTGTTGGTCTGCTCCTTGATGCACCTGCTCCTTCTCGCCAGCACTCTCCG
GCTGATCGCCGCCTTCAGATTTTTCCATGGCCTCGCCGCCCATGTCGACT
GATAACT

BO14588.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG33937-PA 378 CG33937-RA 1..375 393..19 1875 100 Minus
CG33937-PB 378 CG33937-RB 1..375 393..19 1875 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG43675-RB 1628 CG43675-RB 1193..1567 393..19 1875 100 Minus
CG43675-RC 1820 CG43675-RC 1385..1759 393..19 1875 100 Minus
CG45050-RI 2529 CG45050-RI 1193..1402 393..184 1050 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9357246..9357620 393..19 1875 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:05:19 has no hits.

BO14588.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:29 Download gff for BO14588.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33937-PB 1..378 15..393 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:11 Download gff for BO14588.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33937-PB 1..378 15..393 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:15:13 Download gff for BO14588.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33937-RA 1032..1409 15..393 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:35 Download gff for BO14588.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43675-RC 1385..1762 15..393 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:35 Download gff for BO14588.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9357246..9357623 15..393 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:15:13 Download gff for BO14588.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5182968..5183345 15..393 99   Minus

BO14588.5prime Sequence

407 bp (406 high quality bases) assembled on 2006-05-29

> BO14588.5prime
GAAGTTATCAGTCGACATGGGCGGCGAGGCCATGGAAAAATCTGAAGGCG
GCGATCAGCCGGAGAGTGCTGGCGAGAAGGAGCAGGTGCATCAAGGAGCA
GACCAACAGGTTCAACGGGAAAAGCGTCGTCGAAGTGTGTCTCCTGATGG
GGGCGATGTAGGCAGTGTAAAGATGGCTGATGTGGTTTTAGAAGGCGCAT
CGGATGTTGCCGTAACTAAGAAGCGGGTAAACATTAACCACAACACATCA
TCATCGCATCGCCACTCTTGTTTTCCTCACAAAATAGATTCTCACTCGGC
CGATTCGATACGTATTCTTGGCAACAGTTGTACAGTTGACGGTGCTCTGC
TAAAGCCGAAAAAACGCCACTCAACGCCACACAGCGAATGCGCAAGCTTT
CTAGACC

BO14588.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG33937-PA 378 CG33937-RA 1..375 17..391 1875 100 Plus
CG33937-PB 378 CG33937-RB 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG43675-RB 1628 CG43675-RB 1193..1567 17..391 1875 100 Plus
CG43675-RC 1820 CG43675-RC 1385..1759 17..391 1875 100 Plus
CG45050-RI 2529 CG45050-RI 1193..1402 17..226 1050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9357246..9357620 17..391 1875 100 Plus
Blast to na_te.dros performed on 2015-02-11 13:26:42 has no hits.

BO14588.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:30 Download gff for BO14588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33937-PB 1..378 17..395 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:12 Download gff for BO14588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33937-PB 1..378 17..395 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:12:26 Download gff for BO14588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33937-RA 1032..1409 17..395 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:50 Download gff for BO14588.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43675-RC 1385..1762 17..395 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:50 Download gff for BO14588.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9357246..9357623 17..395 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:12:26 Download gff for BO14588.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5182968..5183345 17..395 99   Plus

BO14588.complete Sequence

409 bp assembled on 2006-10-11

GenBank Submission: FJ633186

> BO14588.complete
GAAGTTATCAGTCGACATGGGCGGCGAGGCCATGGAAAAATCTGAAGGCG
GCGATCAGCCGGAGAGTGCTGGCGAGAAGGAGCAGGTGCATCAAGGAGCA
GACCAACAGGTTCAACGGGAAAAGCGTCGTCGAAGTGTGTCTCCTGATGG
GGGCGATGTAGGCAGTGTAAAGATGGCTGATGTGGTTTTAGAAGGCGCAT
CGGATGTTGCCGTAACTAAGAAGCGGGTAAACATTAACCACAACACATCA
TCATCGCATCGCCACTCTTGTTTTCCTCACAAAATAGATTCTCACTCGGC
CGATTCGATACGTATTCTTGGCAACAGTTGTACAGTTGACGGTGCTCTGC
TAAAGCCGAAAAAACGCCACTCAACGCCACACAGCGAATGCGCAAGCTTT
CTAGACCAT

BO14588.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG45050-RI 552 CG45050-PI 1..210 17..226 1050 100 Plus
CG45050-RH 552 CG45050-PH 1..210 17..226 1050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG43675-RB 1628 CG43675-RB 1193..1567 17..391 1875 100 Plus
CG43675-RC 1820 CG43675-RC 1385..1759 17..391 1875 100 Plus
CG45050-RI 2529 CG45050-RI 1193..1402 17..226 1050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9357246..9357620 17..391 1875 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:32:02 has no hits.

BO14588.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:09 Download gff for BO14588.complete
Subject Subject Range Query Range Percent Splice Strand
CG33937-RB 1..378 17..395 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:29 Download gff for BO14588.complete
Subject Subject Range Query Range Percent Splice Strand
CG33937-RB 1091..1468 17..395 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:22:46 Download gff for BO14588.complete
Subject Subject Range Query Range Percent Splice Strand
CG33937-RA 1032..1406 17..393 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:09 Download gff for BO14588.complete
Subject Subject Range Query Range Percent Splice Strand
CG33937-RB 1091..1468 17..395 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:16 Download gff for BO14588.complete
Subject Subject Range Query Range Percent Splice Strand
CG43675-RC 1385..1759 17..393 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:16 Download gff for BO14588.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9357246..9357620 17..393 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:22:46 Download gff for BO14588.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5182968..5183342 17..393 99   Plus

BO14588.pep Sequence

Translation from 16 to 409

> BO14588.pep
MGGEAMEKSEGGDQPESAGEKEQVHQGADQQVQREKRRRSVSPDGGDVGS
VKMADVVLEGASDVAVTKKRVNINHNTSSSHRHSCFPHKIDSHSADSIRI
LGNSCTVDGALLKPKKRHSTPHSECASFLDH

BO14588.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG45050-PI 183 CG45050-PI 1..70 1..70 351 100 Plus
CG45050-PH 183 CG45050-PH 1..70 1..70 351 100 Plus