Clone Sequence Records
BO14591.3prime Sequence
881 bp (690 high quality bases) assembled on 2006-05-29
> BO14591.3prime
ATGGTCTAGAAAGCTTGCGGTACTTTGTCTTTTTCCAAAGTTCCCCTTCT
TCACTGTGCTAACGTCACTCACACGAGGCGACTCAAAGTAGTCCACCTTT
CGTATGTTAGACACTATCTTGAAGTAATTGGCAATGATCTTGTCCACTTC
TTGTCCCTCATATGCGGTGGCCAATTCCTTTTCACATCGTGAGACTACGT
TCGTGAGCAGACCTCCGGACCGAAAGAACGCTATGTTGATCTCCCGTTTG
ACCCACTTGCAGATATGTGAATGGGTGACTGGCTCGAAAAAGTGAAAGAT
CTCGTAAAAGTGCTCGTAACTCTCCCCAAATTTTCGCATTTCAAGTTCAC
CCAACTTGGGAATGTCCAGGTGGTTTCGTCTGATGATATGATATGGGTCG
TATTGCTCCGAAAAGTTTGAGAACCGAACTGCTGGCCAGTCGAGGTTCAG
AAGGGTGTTGTAGAGATTCTTCGGGTGGCCAAGGATTCCATGGGACAGAT
CAATCAAGCGGAGCTGCGATCCGGGCACAACGTACTCCAACTCGATCTGA
GCGATGTGAGGATCAGTGCCCCTATACTTACGCTTTCCTATCCACAGAAT
GGGCAAATCCTCCGTCACAACATGCTCCAACTCTTGGACCAGCGGAGAGA
TCTGGACGCGATAATTGAGGTTCTTGTTGTTTCGGCCGTAAAGAAGACTT
CGCTCCGCCTCCGTGAACTCAAGGTACTCAGGGCGGACGGAAACAAAGTG
CTCCGACCGGAAAAGCCGATTCATCTCCATTTCGATGACGAAATACGCTC
GGCGATGCATGCATATCCAGACTATTTGGATGGATACTGCCAGAAAATGC
TCATGGAAGTACTTATCGTGGATAGTTGCTG
BO14591.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31391-PA | 1443 | CG31391-RA | 578..1440 | 881..19 | 4290 | 99.8 | Minus |
CG31467-PA | 1443 | CG31467-RA | 578..800 | 881..659 | 490 | 88.7 | Minus |
CG31467-PA | 1443 | CG31467-RA | 1195..1289 | 264..170 | 300 | 92.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:56:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31391-RA | 1704 | CG31391-RA | 664..1526 | 881..19 | 4300 | 99.9 | Minus |
CG31467-RA | 1694 | CG31467-RA | 707..1496 | 881..92 | 1385 | 78.7 | Minus |
CG14689-RA | 1661 | CG14689-RA | 703..1153 | 859..409 | 530 | 75.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10703550..10704412 | 19..881 | 4300 | 99.9 | Plus |
3R | 32079331 | 3R | 10705368..10706157 | 92..881 | 1370 | 78.2 | Plus |
3R | 32079331 | 3R | 10710096..10710546 | 409..859 | 515 | 74.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:56:43 has no hits.
BO14591.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:36 Download gff for
BO14591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-PA | 578..1443 | 15..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:19 Download gff for
BO14591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-PA | 578..1443 | 15..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:37:28 Download gff for
BO14591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-RA | 664..1529 | 15..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:47 Download gff for
BO14591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-RA | 664..1529 | 15..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:47 Download gff for
BO14591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10703546..10704412 | 15..881 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:37:28 Download gff for
BO14591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6529268..6530134 | 15..881 | 99 | | Plus |
BO14591.5prime Sequence
909 bp (789 high quality bases) assembled on 2006-05-29
> BO14591.5prime
GAAGTTATCAGTCGACATGAAAAGAGTCCATGTCGATAACTACGCTCCAA
AGTACTACAGCGGCAAGTGGTCATGGGACTCGGAGAAGGACTGCCTCAAC
TTTCAGGCGCACAACGATCTGGAAAACGCAAGAGAGCGCTATATAATCAC
CAATGGGTACAAGTTCCTGCGTACCATCGACCAAGAGGAGGAGCTTATCT
TCCGGCAGGAGTATGTACGCGCCAAGTCCAACACCAGTGACACAGTGGTG
CTAAGAGATATTCGAGATCTGGTGCTCTACTTGATGCCTAAAGACTTTCT
AACCTACAAGTTCATTGAATTCATGCATGAGCCACAGGTGCAGTCCGTGC
TCCACGCCTTAACATTGTACTTTGAGTACTACCTACGCCTGGTGGAGTTC
GTCCTGATTCGCAGAGATGAACTCTCTGGCCAGATGGCCCAAATTCAGAG
CGAGCAGACCACTGAGATGAAGAAAACCTATTCCGTTTACCTGAGCCACT
TCCGCATGCTATTAGCCCGAAACTACTGTGAGATTATCAAGGGCGAGGGA
TCTATGGCCAAGTACTACCACATGAAGCCGATTTCCAACATTTCAGCAAC
TATCCACGATAAGTACTTCCATGAGCATTTTCTGGCAGTATCCATCCAAA
TAGTCTGGATATGCATGCATCGCCGAGCGTATTTCGTCATCGAAATGGAG
ATGAATCGGCTTTTCCGGTCGGAGCACTTTGTTTCCGTCCGCCCTGAGTA
CCTTGAGTTCACGGAGGCGGAGCGAAGTCTTCTTTACGGCCGAAACAACA
AGAACCTCAATTATCGCGTCCAGATCTCTCCGCTGGTCCAAGAGTTGGAG
CATGTTGTGACGGAAGATTTGCCATTCTGTGGATAGAAAGCGTAAGTTAT
AGGGCACTG
BO14591.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31391-PA | 1443 | CG31391-RA | 1..857 | 17..873 | 4260 | 99.8 | Plus |
CG31467-PA | 1443 | CG31467-RA | 542..800 | 558..816 | 670 | 90.3 | Plus |
CG31467-PA | 1443 | CG31467-RA | 13..200 | 29..216 | 565 | 92 | Plus |
CG14689-PA | 1464 | CG14689-RA | 132..193 | 148..209 | 185 | 91.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:43:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31391-RA | 1704 | CG31391-RA | 87..981 | 17..909 | 4365 | 99.4 | Plus |
CG31467-RA | 1694 | CG31467-RA | 142..929 | 29..816 | 1750 | 81.6 | Plus |
CG14689-RA | 1661 | CG14689-RA | 109..972 | 16..884 | 685 | 73.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:42:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10704107..10704989 | 897..17 | 4300 | 99.7 | Minus |
3R | 32079331 | 3R | 10705935..10706722 | 816..29 | 1750 | 81.5 | Minus |
3R | 32079331 | 3R | 10710947..10711140 | 209..16 | 475 | 83 | Minus |
3R | 32079331 | 3R | 10710310..10710716 | 852..446 | 355 | 72.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:42:58 has no hits.
BO14591.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:37 Download gff for
BO14591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-PA | 1..895 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:20 Download gff for
BO14591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-PA | 1..895 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:11:34 Download gff for
BO14591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-RA | 87..981 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:30:05 Download gff for
BO14591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-RA | 87..981 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:30:05 Download gff for
BO14591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10704095..10704989 | 17..909 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:11:34 Download gff for
BO14591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6529817..6530711 | 17..909 | 99 | | Minus |
BO14591.complete Sequence
1474 bp assembled on 2006-10-11
GenBank Submission: FJ633187
> BO14591.complete
GAAGTTATCAGTCGACATGAAAAGAGTCCATGTCGATAACTACGCTCCAA
AGTACTACAGCGGCAAGTGGTCATGGGACTCGGAGAAGGACTGCCTCAAC
TTTCAGGCGCACAACGATCTGGAAAACGCAAGAGAGCGCTATATAATCAC
CAATGGGTACAAGTTCCTGCGTACCATCGACCAAGAGGAGGAGCTTATCT
TCCGGCAGGAGTATGTACGCGCCAAGTCCAACACCAGTGACACAGTGGTG
CTAAGAGATATTCGAGATCTGGTGCTCTACTTGATGCCTAAAGACTTTCT
AACCTACAAGTTCATTGAATTCATGCATGAGCCACAGGTGCAGTCCGTGC
TCCACGCCTTAACATTGTACTTTGAGTACTACCTACGCCTGGTGGAGTTC
GTCCTGATTCGCAGAGATGAACTCTCTGGCCAGATGGCCCAAATTCAGAG
CGAGCAGACCACTGAGATGAAGAAAACCTATTCCGTTTACCTGAGCCACT
TCCGCATGCTATTAGCCCGAAACTACTGTGAGATTATCAAGGGCGAGGGA
TCTATGGCCAAGTACTACCACATGAAGCCGATTTCCAACATTTCAGCAAC
TATCCACGATAAGTACTTCCATGAGCATTTTCTGGCAGTATCCATCCAAA
TAGTCTGGATATGCATGCATCGCCGAGCGTATTTCGTCATCGAAATGGAG
ATGAATCGGCTTTTCCGGTCGGAGCACTTTGTTTCCGTCCGCCCTGAGTA
CCTTGAGTTCACGGAGGCGGAGCGAAGTCTTCTTTACGGCCGAAACAACA
AGAACCTCAATTATCGCGTCCAGATCTCTCCGCTGGTCCAAGAGTTGGAG
CATGTTGTGACGGAGGATTTGCCCATTCTGTGGATAGGAAAGCGTAAGTA
TAGGGGCACTGATCCTCACATCGCTCAGATCGAGTTGGAGTACGTTGTGC
CCGGATCGCAGCTCCGCTTGATTGATCTGTCCCATGGAATCCTTGGCCAC
CCGAAGAATCTCTACAACACCCTTCTGAACCTCGACTGGCCAGCAGTTCG
GTTCTCAAACTTTTCGGAGCAATACGACCCATATCATATCATCAGACGAA
ACCACCTGGACATTCCCAAGTTGGGTGAACTTGAAATGCGAAAATTTGGG
GAGAGTTACGAGCACTTTTACGAGATCTTTCACTTTTTCGAGCCAGTCAC
CCATTCACATATCTGCAAGTGGGTCAAACGGGAGATCAACATAGCGTTCT
TTCGGTCCGGAGGTCTGCTCACGAACGTAGTCTCACGATGTGAAAAGGAA
TTGGCCACCGCATATGAGGGACAAGAAGTGGACAAGATCATTGCCAATTA
CTTCAAGATAGTGTCTAACATACGAAAGGTGGACTACTTTGAGTCGCCTC
GTGTGAGTGACGTTAGCACAGTGAAGAAGGGGAACTTTGGAAAAAGACAA
AGTACCGCAAGCTTTCTAGACCAT
BO14591.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:42:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31391-RA | 1443 | CG31391-PA | 1..1440 | 17..1456 | 7185 | 99.9 | Plus |
CG31467-RA | 1443 | CG31467-PA | 13..1367 | 29..1383 | 2380 | 78.4 | Plus |
CG14689-RA | 1464 | CG14689-PA | 424..1044 | 446..1066 | 600 | 73.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:42:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31391-RA | 1704 | CG31391-RA | 87..1526 | 17..1456 | 7185 | 99.9 | Plus |
CG31467-RA | 1694 | CG31467-RA | 142..1496 | 29..1383 | 2380 | 78.4 | Plus |
CG14689-RA | 1661 | CG14689-RA | 533..1153 | 446..1066 | 600 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10703550..10704989 | 1456..17 | 7185 | 99.9 | Minus |
3R | 32079331 | 3R | 10705368..10706722 | 1383..29 | 2380 | 78.4 | Minus |
3R | 32079331 | 3R | 10710096..10710716 | 1066..446 | 600 | 73.1 | Minus |
3R | 32079331 | 3R | 10710947..10711140 | 209..16 | 475 | 83 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:42:20 has no hits.
BO14591.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:34:10 Download gff for
BO14591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-RA | 1..1443 | 17..1460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:50:34 Download gff for
BO14591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-RA | 87..1529 | 17..1460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:34:16 Download gff for
BO14591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-RA | 87..1526 | 17..1458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:34:11 Download gff for
BO14591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-RA | 87..1529 | 17..1460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:05 Download gff for
BO14591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31391-RA | 87..1526 | 17..1458 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:40:05 Download gff for
BO14591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10703548..10704989 | 17..1458 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:34:16 Download gff for
BO14591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6529270..6530711 | 17..1458 | 99 | | Minus |
BO14591.pep Sequence
Translation from 16 to 1474
> BO14591.pep
MKRVHVDNYAPKYYSGKWSWDSEKDCLNFQAHNDLENARERYIITNGYKF
LRTIDQEEELIFRQEYVRAKSNTSDTVVLRDIRDLVLYLMPKDFLTYKFI
EFMHEPQVQSVLHALTLYFEYYLRLVEFVLIRRDELSGQMAQIQSEQTTE
MKKTYSVYLSHFRMLLARNYCEIIKGEGSMAKYYHMKPISNISATIHDKY
FHEHFLAVSIQIVWICMHRRAYFVIEMEMNRLFRSEHFVSVRPEYLEFTE
AERSLLYGRNNKNLNYRVQISPLVQELEHVVTEDLPILWIGKRKYRGTDP
HIAQIELEYVVPGSQLRLIDLSHGILGHPKNLYNTLLNLDWPAVRFSNFS
EQYDPYHIIRRNHLDIPKLGELEMRKFGESYEHFYEIFHFFEPVTHSHIC
KWVKREINIAFFRSGGLLTNVVSRCEKELATAYEGQEVDKIIANYFKIVS
NIRKVDYFESPRVSDVSTVKKGNFGKRQSTASFLDH
BO14591.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31391-PA | 480 | CG31391-PA | 1..480 | 1..480 | 2538 | 100 | Plus |
CG31467-PA | 480 | CG31467-PA | 1..456 | 1..456 | 1944 | 78.5 | Plus |
CG14689-PA | 487 | CG14689-PA | 1..477 | 1..478 | 1723 | 67.7 | Plus |