Clone BO14596 Report

Search the DGRC for BO14596

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:145
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptPpm1-RA
Protein status:BO14596.pep: Imported from assembly
Sequenced Size:1090

Clone Sequence Records

BO14596.3prime Sequence

823 bp (793 high quality bases) assembled on 2006-05-29

> BO14596.3prime
ATGGTCTAGAAAGCTTGCAAGATTAGCCTCGGGAGTTTCGCTTTCGCGAA
GTCCGAAGCCCAGGCCCAATCGAGAAGTCGACGACCCCGAAGATCCCTGA
GAACAGGGAGTTACGACCTTCACCGACTGATCCTGGATGTCGCCTACGGT
TTCAACGGGGGTCTTTCGTTTGCCTCCGCAGCGCACCGCCAGATCCTCGT
AGCTCTTGTTGTGCAGCAGGCACACCAGGATGACGGTCATGTTGTCGCCG
CCCACATTGCCCGTGTGGCCATCCGGAGACAAGCAGCTGTTCATCAGTTC
CTCGCAAATGAGTTCCGGCTCCATGCCATCGCGTATGCGCTTGTGCACGA
ACTGGCAGACTTCGAAGTTGCTCATCACATCCCAGATCCCGTCGCAGGCC
AGCAGGACAAACTCCAAGTCTTCGGTGATGTCAAGAACCTCCACGTCGGG
ATAGGCCGTCACGATTTGCTCTTCTGGAGTCTTTAGTAAGTTCTTCTTGT
AGATAAAGTCGCCGAGGGCGCGGGAAAGGGCCAGATTGCCATTGACCCGA
TTAAACTCCACCCAACCACCGCTGGCCATGATCCGTTTGGACTCCTTCGC
GTCATTCGGCTTGTGGTCGACGGACAGGGCGTGAACCATTCCAGAAATGC
AGGCGATGGCCCGCGAATCGCCCGCATTGGCACAGTACAGGCGACGCTCC
CTAATGAGCACCACAATGGCAGTGCAGCCGGCCGTTTGCTCATCAAGGGA
GCCATTTTGCAGCATCTCCCGATCGAAGTCGAGGAGGGCCTTTTTCAAGG
CCACCTCAATGCTATTGTCCCGA

BO14596.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12169-PA 1059 CG12169-RA 252..1056 823..19 4000 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
Ppm1-RA 1422 CG12169-RA 426..1230 823..19 4010 99.9 Minus
CG17746-RB 1694 CG17746-RB 665..1079 628..211 380 74.8 Minus
CG17746-RA 1577 CG17746-RA 690..1104 628..211 380 74.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 581814..582618 823..19 4010 99.9 Minus
3L 28110227 3L 3237790..3237911 507..628 265 81.1 Plus
Blast to na_te.dros performed on 2015-01-30 18:53:32 has no hits.

BO14596.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:46 Download gff for BO14596.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12169-PA 253..1059 15..822 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:32 Download gff for BO14596.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12169-PA 253..1059 15..822 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:03:18 Download gff for BO14596.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 427..1237 10..822 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:15:55 Download gff for BO14596.3prime
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 427..1237 10..822 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:15:55 Download gff for BO14596.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 581815..582625 10..822 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:03:18 Download gff for BO14596.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 581815..582625 10..822 99   Minus

BO14596.5prime Sequence

744 bp (743 high quality bases) assembled on 2006-05-29

> BO14596.5prime
GAAGTTATCACTCGACATGGGACAGACACTGTCGGAACCAGTGACCACCA
AGGACACCGCTTGCTGTGCCAATGCAAGCTATCGCGTGGGCTCATCATGC
ATGCAAGGATGGCGCGTGGATATGGAGGACGCCCACACCCACATTCTTTC
CCTGCCGGATGACCCGCAGGCGGCCTTCTTCGCCGTTTACGACGGACACG
GTGGAGCTTCAGTGGCCAAGTACGCTGGTAAGCATTTGCACAAGTTCATT
ACGAAGCGGCCGGAGTATCGGGACAATAGCATTGAGGTGGCCTTGAAAAA
GGCCTTCCTCGACTTCGATCGGGAGATGCTGCAAAATGGCTCCCTTGATG
AGCAAACGGCCGGCTGCACTGCCATTGTGGTGCTCATTAGGGAGCGTCGC
CTGTACTGTGCCAATGCGGGCGATTCGCGGGCCATCGCCTGCATTTCTGG
AATGGTTCACGCCCTGTCCGTCGACCACAAGCCGAATGACGCGAAGGAGT
CCAAACGGATCATGGCCAGCGGTGGTTGGGTGGAGTTTAATCGGGTCAAT
GGCAATCTGGCCCTTTCCCGCGCCCTCGGCGACTTTATCTACAAGAAGAA
CTTACTAAAGACTCCAGAAGAGCAAATCGTGACGGCCTATCCCGACGTGG
AGGTTCTTGACATCACCGAAGACTTGGAGTTTGTCCTGCTGGCCTGCGAC
GGGATCTGGGATGTGATGAGCAACTTCGAAGTCTGCCAGTTCGT

BO14596.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12169-PA 1059 CG12169-RA 1..728 17..744 3640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Ppm1-RA 1422 CG12169-RA 175..902 17..744 3640 100 Plus
CG17746-RB 1694 CG17746-RB 222..923 17..724 505 72.4 Plus
CG17746-RA 1577 CG17746-RA 247..948 17..724 505 72.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 581563..582290 17..744 3640 100 Plus
3L 28110227 3L 3238643..3238893 267..17 400 77.3 Minus
3L 28110227 3L 3237790..3237911 584..463 265 81.1 Minus
Blast to na_te.dros performed on 2015-02-12 06:56:35 has no hits.

BO14596.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:47 Download gff for BO14596.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12169-PA 1..728 17..744 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:33 Download gff for BO14596.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12169-PA 1..728 17..744 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:00:32 Download gff for BO14596.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 170..902 8..744 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:17:58 Download gff for BO14596.5prime
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 170..902 8..744 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:17:58 Download gff for BO14596.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 581558..582290 8..744 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:00:32 Download gff for BO14596.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 581558..582290 8..744 99   Plus

BO14596.complete Sequence

1090 bp assembled on 2008-08-14

GenBank Submission: FJ633188

> BO14596.complete
GAAGTTATCACTCGACATGGGACAGACACTGTCGGAACCAGTGACCACCA
AGGACACCGCTTGCTGTGCCAATGCAAGCTATCGCGTGGGCTCATCATGC
ATGCAAGGATGGCGCGTGGATATGGAGGACGCCCACACCCACATTCTTTC
CCTGCCGGATGACCCGCAGGCGGCCTTCTTCGCCGTTTACGACGGACACG
GTGGAGCTTCAGTGGCCAAGTACGCTGGTAAGCATTTGCACAAGTTCATT
ACGAAGCGGCCGGAGTATCGGGACAATAGCATTGAGGTGGCCTTGAAAAA
GGCCTTCCTCGACTTCGATCGGGAGATGCTGCAAAATGGCTCCCTTGATG
AGCAAACGGCCGGCTGCACTGCCATTGTGGTGCTCATTAGGGAGCGTCGC
CTGTACTGTGCCAATGCGGGCGATTCGCGGGCCATCGCCTGCATTTCTGG
AATGGTTCACGCCCTGTCCGTCGACCACAAGCCGAATGACGCGAAGGAGT
CCAAACGGATCATGGCCAGCGGTGGTTGGGTGGAGTTTAATCGGGTCAAT
GGCAATCTGGCCCTTTCCCGCGCCCTCGGCGACTTTATCTACAAGAAGAA
CTTACTAAAGACTCCAGAAGAGCAAATCGTGACGGCCTATCCCGACGTGG
AGGTTCTTGACATCACCGAAGACTTGGAGTTTGTCCTGCTGGCCTGCGAC
GGGATCTGGGATGTGATGAGCAACTTCGAAGTCTGCCAGTTCGTGCACAA
GCGCATACGCGATGGCATGGAGCCGGAACTCATTTGCGAGGAACTGATGA
ACAGCTGCTTGTCTCCGGATGGCCACACGGGCAATGTGGGCGGCGACAAC
ATGACCGTCATCCTGGTGTGCCTGCTGCACAACAAGAGCTACGAGGATCT
GGCGGTGCGCTGCGGAGGCAAACGAAAGACCCCCGTTGAAACCGTAGGCG
ACATCCAGGATCAGTCGGTGAAGGTCGTAACTCCCTGTTCTCAGGGATCT
TCGGGGTCGTCGACTTCTCGATTGGGCCTGGGCTTCGGACTTCGCGAAAG
CGAAACTCCCGAGGCTAATCTTGCAAGCTTTCTAGACCAT

BO14596.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
Ppm1-RA 1059 CG12169-PA 1..1056 17..1072 5280 100 Plus
CG17746-RB 1116 CG17746-PB 1..858 17..880 465 71.1 Plus
CG17746-RA 1116 CG17746-PA 1..858 17..880 465 71.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ppm1-RA 1422 CG12169-RA 175..1230 17..1072 5280 100 Plus
CG17746-RB 1694 CG17746-RB 222..1079 17..880 465 71.1 Plus
CG17746-RA 1577 CG17746-RA 247..1104 17..880 465 71.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 581563..582618 17..1072 5280 100 Plus
3L 28110227 3L 3238643..3238893 267..17 400 77.3 Minus
3L 28110227 3L 3237790..3237911 584..463 265 81.1 Minus
Blast to na_te.dros performed on 2014-11-27 20:26:47 has no hits.

BO14596.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:33 Download gff for BO14596.complete
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 170..1237 8..1081 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:09 Download gff for BO14596.complete
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 175..1230 17..1074 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:06 Download gff for BO14596.complete
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 175..1230 17..1074 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:36 Download gff for BO14596.complete
Subject Subject Range Query Range Percent Splice Strand
Ppm1-RA 175..1230 17..1074 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:36 Download gff for BO14596.complete
Subject Subject Range Query Range Percent Splice Strand
3L 581563..582618 17..1074 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:09 Download gff for BO14596.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 581563..582618 17..1074 99   Plus

BO14596.pep Sequence

Translation from 16 to 1090

> BO14596.pep
MGQTLSEPVTTKDTACCANASYRVGSSCMQGWRVDMEDAHTHILSLPDDP
QAAFFAVYDGHGGASVAKYAGKHLHKFITKRPEYRDNSIEVALKKAFLDF
DREMLQNGSLDEQTAGCTAIVVLIRERRLYCANAGDSRAIACISGMVHAL
SVDHKPNDAKESKRIMASGGWVEFNRVNGNLALSRALGDFIYKKNLLKTP
EEQIVTAYPDVEVLDITEDLEFVLLACDGIWDVMSNFEVCQFVHKRIRDG
MEPELICEELMNSCLSPDGHTGNVGGDNMTVILVCLLHNKSYEDLAVRCG
GKRKTPVETVGDIQDQSVKVVTPCSQGSSGSSTSRLGLGFGLRESETPEA
NLASFLDH

BO14596.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ppm1-PA 352 CG12169-PA 1..352 1..352 1852 100 Plus
CG17746-PB 371 CG17746-PB 1..297 1..299 1110 68.9 Plus
CG17746-PA 371 CG17746-PA 1..297 1..299 1110 68.9 Plus
CG6036-PA 371 CG6036-PA 5..283 1..286 490 37.2 Plus
alph-PC 368 CG1906-PC 1..318 1..320 465 35.2 Plus