Clone Sequence Records
BO14596.3prime Sequence
823 bp (793 high quality bases) assembled on 2006-05-29
> BO14596.3prime
ATGGTCTAGAAAGCTTGCAAGATTAGCCTCGGGAGTTTCGCTTTCGCGAA
GTCCGAAGCCCAGGCCCAATCGAGAAGTCGACGACCCCGAAGATCCCTGA
GAACAGGGAGTTACGACCTTCACCGACTGATCCTGGATGTCGCCTACGGT
TTCAACGGGGGTCTTTCGTTTGCCTCCGCAGCGCACCGCCAGATCCTCGT
AGCTCTTGTTGTGCAGCAGGCACACCAGGATGACGGTCATGTTGTCGCCG
CCCACATTGCCCGTGTGGCCATCCGGAGACAAGCAGCTGTTCATCAGTTC
CTCGCAAATGAGTTCCGGCTCCATGCCATCGCGTATGCGCTTGTGCACGA
ACTGGCAGACTTCGAAGTTGCTCATCACATCCCAGATCCCGTCGCAGGCC
AGCAGGACAAACTCCAAGTCTTCGGTGATGTCAAGAACCTCCACGTCGGG
ATAGGCCGTCACGATTTGCTCTTCTGGAGTCTTTAGTAAGTTCTTCTTGT
AGATAAAGTCGCCGAGGGCGCGGGAAAGGGCCAGATTGCCATTGACCCGA
TTAAACTCCACCCAACCACCGCTGGCCATGATCCGTTTGGACTCCTTCGC
GTCATTCGGCTTGTGGTCGACGGACAGGGCGTGAACCATTCCAGAAATGC
AGGCGATGGCCCGCGAATCGCCCGCATTGGCACAGTACAGGCGACGCTCC
CTAATGAGCACCACAATGGCAGTGCAGCCGGCCGTTTGCTCATCAAGGGA
GCCATTTTGCAGCATCTCCCGATCGAAGTCGAGGAGGGCCTTTTTCAAGG
CCACCTCAATGCTATTGTCCCGA
BO14596.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12169-PA | 1059 | CG12169-RA | 252..1056 | 823..19 | 4000 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppm1-RA | 1422 | CG12169-RA | 426..1230 | 823..19 | 4010 | 99.9 | Minus |
CG17746-RB | 1694 | CG17746-RB | 665..1079 | 628..211 | 380 | 74.8 | Minus |
CG17746-RA | 1577 | CG17746-RA | 690..1104 | 628..211 | 380 | 74.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 581814..582618 | 823..19 | 4010 | 99.9 | Minus |
3L | 28110227 | 3L | 3237790..3237911 | 507..628 | 265 | 81.1 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:53:32 has no hits.
BO14596.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:46 Download gff for
BO14596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12169-PA | 253..1059 | 15..822 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:32 Download gff for
BO14596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12169-PA | 253..1059 | 15..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:03:18 Download gff for
BO14596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppm1-RA | 427..1237 | 10..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:15:55 Download gff for
BO14596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppm1-RA | 427..1237 | 10..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:15:55 Download gff for
BO14596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 581815..582625 | 10..822 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:03:18 Download gff for
BO14596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 581815..582625 | 10..822 | 99 | | Minus |
BO14596.5prime Sequence
744 bp (743 high quality bases) assembled on 2006-05-29
> BO14596.5prime
GAAGTTATCACTCGACATGGGACAGACACTGTCGGAACCAGTGACCACCA
AGGACACCGCTTGCTGTGCCAATGCAAGCTATCGCGTGGGCTCATCATGC
ATGCAAGGATGGCGCGTGGATATGGAGGACGCCCACACCCACATTCTTTC
CCTGCCGGATGACCCGCAGGCGGCCTTCTTCGCCGTTTACGACGGACACG
GTGGAGCTTCAGTGGCCAAGTACGCTGGTAAGCATTTGCACAAGTTCATT
ACGAAGCGGCCGGAGTATCGGGACAATAGCATTGAGGTGGCCTTGAAAAA
GGCCTTCCTCGACTTCGATCGGGAGATGCTGCAAAATGGCTCCCTTGATG
AGCAAACGGCCGGCTGCACTGCCATTGTGGTGCTCATTAGGGAGCGTCGC
CTGTACTGTGCCAATGCGGGCGATTCGCGGGCCATCGCCTGCATTTCTGG
AATGGTTCACGCCCTGTCCGTCGACCACAAGCCGAATGACGCGAAGGAGT
CCAAACGGATCATGGCCAGCGGTGGTTGGGTGGAGTTTAATCGGGTCAAT
GGCAATCTGGCCCTTTCCCGCGCCCTCGGCGACTTTATCTACAAGAAGAA
CTTACTAAAGACTCCAGAAGAGCAAATCGTGACGGCCTATCCCGACGTGG
AGGTTCTTGACATCACCGAAGACTTGGAGTTTGTCCTGCTGGCCTGCGAC
GGGATCTGGGATGTGATGAGCAACTTCGAAGTCTGCCAGTTCGT
BO14596.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12169-PA | 1059 | CG12169-RA | 1..728 | 17..744 | 3640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppm1-RA | 1422 | CG12169-RA | 175..902 | 17..744 | 3640 | 100 | Plus |
CG17746-RB | 1694 | CG17746-RB | 222..923 | 17..724 | 505 | 72.4 | Plus |
CG17746-RA | 1577 | CG17746-RA | 247..948 | 17..724 | 505 | 72.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 581563..582290 | 17..744 | 3640 | 100 | Plus |
3L | 28110227 | 3L | 3238643..3238893 | 267..17 | 400 | 77.3 | Minus |
3L | 28110227 | 3L | 3237790..3237911 | 584..463 | 265 | 81.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:56:35 has no hits.
BO14596.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:47 Download gff for
BO14596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12169-PA | 1..728 | 17..744 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:33 Download gff for
BO14596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12169-PA | 1..728 | 17..744 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:00:32 Download gff for
BO14596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppm1-RA | 170..902 | 8..744 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:17:58 Download gff for
BO14596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppm1-RA | 170..902 | 8..744 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:17:58 Download gff for
BO14596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 581558..582290 | 8..744 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:00:32 Download gff for
BO14596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 581558..582290 | 8..744 | 99 | | Plus |
BO14596.complete Sequence
1090 bp assembled on 2008-08-14
GenBank Submission: FJ633188
> BO14596.complete
GAAGTTATCACTCGACATGGGACAGACACTGTCGGAACCAGTGACCACCA
AGGACACCGCTTGCTGTGCCAATGCAAGCTATCGCGTGGGCTCATCATGC
ATGCAAGGATGGCGCGTGGATATGGAGGACGCCCACACCCACATTCTTTC
CCTGCCGGATGACCCGCAGGCGGCCTTCTTCGCCGTTTACGACGGACACG
GTGGAGCTTCAGTGGCCAAGTACGCTGGTAAGCATTTGCACAAGTTCATT
ACGAAGCGGCCGGAGTATCGGGACAATAGCATTGAGGTGGCCTTGAAAAA
GGCCTTCCTCGACTTCGATCGGGAGATGCTGCAAAATGGCTCCCTTGATG
AGCAAACGGCCGGCTGCACTGCCATTGTGGTGCTCATTAGGGAGCGTCGC
CTGTACTGTGCCAATGCGGGCGATTCGCGGGCCATCGCCTGCATTTCTGG
AATGGTTCACGCCCTGTCCGTCGACCACAAGCCGAATGACGCGAAGGAGT
CCAAACGGATCATGGCCAGCGGTGGTTGGGTGGAGTTTAATCGGGTCAAT
GGCAATCTGGCCCTTTCCCGCGCCCTCGGCGACTTTATCTACAAGAAGAA
CTTACTAAAGACTCCAGAAGAGCAAATCGTGACGGCCTATCCCGACGTGG
AGGTTCTTGACATCACCGAAGACTTGGAGTTTGTCCTGCTGGCCTGCGAC
GGGATCTGGGATGTGATGAGCAACTTCGAAGTCTGCCAGTTCGTGCACAA
GCGCATACGCGATGGCATGGAGCCGGAACTCATTTGCGAGGAACTGATGA
ACAGCTGCTTGTCTCCGGATGGCCACACGGGCAATGTGGGCGGCGACAAC
ATGACCGTCATCCTGGTGTGCCTGCTGCACAACAAGAGCTACGAGGATCT
GGCGGTGCGCTGCGGAGGCAAACGAAAGACCCCCGTTGAAACCGTAGGCG
ACATCCAGGATCAGTCGGTGAAGGTCGTAACTCCCTGTTCTCAGGGATCT
TCGGGGTCGTCGACTTCTCGATTGGGCCTGGGCTTCGGACTTCGCGAAAG
CGAAACTCCCGAGGCTAATCTTGCAAGCTTTCTAGACCAT
BO14596.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:26:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppm1-RA | 1059 | CG12169-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
CG17746-RB | 1116 | CG17746-PB | 1..858 | 17..880 | 465 | 71.1 | Plus |
CG17746-RA | 1116 | CG17746-PA | 1..858 | 17..880 | 465 | 71.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:26:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppm1-RA | 1422 | CG12169-RA | 175..1230 | 17..1072 | 5280 | 100 | Plus |
CG17746-RB | 1694 | CG17746-RB | 222..1079 | 17..880 | 465 | 71.1 | Plus |
CG17746-RA | 1577 | CG17746-RA | 247..1104 | 17..880 | 465 | 71.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:26:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 581563..582618 | 17..1072 | 5280 | 100 | Plus |
3L | 28110227 | 3L | 3238643..3238893 | 267..17 | 400 | 77.3 | Minus |
3L | 28110227 | 3L | 3237790..3237911 | 584..463 | 265 | 81.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:26:47 has no hits.
BO14596.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:33 Download gff for
BO14596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppm1-RA | 170..1237 | 8..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:09 Download gff for
BO14596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppm1-RA | 175..1230 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:06 Download gff for
BO14596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppm1-RA | 175..1230 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:36 Download gff for
BO14596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ppm1-RA | 175..1230 | 17..1074 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:36 Download gff for
BO14596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 581563..582618 | 17..1074 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:09 Download gff for
BO14596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 581563..582618 | 17..1074 | 99 | | Plus |
BO14596.pep Sequence
Translation from 16 to 1090
> BO14596.pep
MGQTLSEPVTTKDTACCANASYRVGSSCMQGWRVDMEDAHTHILSLPDDP
QAAFFAVYDGHGGASVAKYAGKHLHKFITKRPEYRDNSIEVALKKAFLDF
DREMLQNGSLDEQTAGCTAIVVLIRERRLYCANAGDSRAIACISGMVHAL
SVDHKPNDAKESKRIMASGGWVEFNRVNGNLALSRALGDFIYKKNLLKTP
EEQIVTAYPDVEVLDITEDLEFVLLACDGIWDVMSNFEVCQFVHKRIRDG
MEPELICEELMNSCLSPDGHTGNVGGDNMTVILVCLLHNKSYEDLAVRCG
GKRKTPVETVGDIQDQSVKVVTPCSQGSSGSSTSRLGLGFGLRESETPEA
NLASFLDH
BO14596.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:19:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ppm1-PA | 352 | CG12169-PA | 1..352 | 1..352 | 1852 | 100 | Plus |
CG17746-PB | 371 | CG17746-PB | 1..297 | 1..299 | 1110 | 68.9 | Plus |
CG17746-PA | 371 | CG17746-PA | 1..297 | 1..299 | 1110 | 68.9 | Plus |
CG6036-PA | 371 | CG6036-PA | 5..283 | 1..286 | 490 | 37.2 | Plus |
alph-PC | 368 | CG1906-PC | 1..318 | 1..320 | 465 | 35.2 | Plus |