Clone BO14602 Report

Search the DGRC for BO14602

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:146
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG5435-RA
Protein status:BO14602.pep: validated full length
Sequenced Size:610

Clone Sequence Records

BO14602.3prime Sequence

608 bp (608 high quality bases) assembled on 2006-06-02

> BO14602.3prime
ATGGTCTAGAAAGCTTGCATAGCGGAAGAAGTTGCCGTCGGAGGTCTGGC
GCGAGAATCCATTGTTCACCAGCTGGTTGTGGACACCGCTGCAAATGAGC
TTCACGCTGTGCGGATGAATCTTTTCCTTACAACCGCCTATGCGAAGTGG
ATGACCCAATACGTCCTCCTGCTTGCGCCGAATGAAGCGCGTGTTGCGCA
ACACCCGAAATGATTTGAGTTGGGAACCAATTTCCTTGGCCGCCCCAGGA
GCTGACCAGCTACTTATGGCGCGGCACGTCTCCCTCTGCATCACGTAGTC
CACCTTGTCCGGAAATGCTTCGCGGGTGTGATCGTAGCGCGACTGCAGCG
AAAAGTCCAGCGTATCCTTCGGGATGTTCGGATTGGCACGGTACCGCTTG
CTCGAGCGCACCGAGTTCATCGTTTGATGATAGAAGAGCCGCTGATACGG
CTCCAGATGGCCATGCCAGGTGCCCGGTTTCAGATGGGCCTCCGGCAGCG
GGGGCTCTGGAAAAGAGCACACATAGGTGCCCTCCGTATGCAGTTCCGGC
TGCCATGATACATTCTTGATCTGCACAGTATCGTACTGAATCATGTCGAC
TGATAACT

BO14602.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5435-PA 579 CG5435-RA 1..576 594..19 2830 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5435-RB 929 CG5435-RB 106..681 594..19 2850 99.7 Minus
CG5435-RA 903 CG5435-RA 80..655 594..19 2850 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12430277..12430694 137..554 2090 100 Plus
2L 23513712 2L 12430075..12430195 19..139 575 98.3 Plus
2L 23513712 2L 12430746..12430787 553..594 210 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:02:51 has no hits.

BO14602.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:48 Download gff for BO14602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5435-PA 1..579 18..594 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:35 Download gff for BO14602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5435-PA 1..579 18..594 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:49:11 Download gff for BO14602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 80..660 11..594 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:41:28 Download gff for BO14602.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 80..660 11..594 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:41:28 Download gff for BO14602.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12430747..12430787 554..594 100   Plus
2L 12430278..12430693 138..553 100 <- Plus
2L 12430070..12430193 11..137 95 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:49:11 Download gff for BO14602.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12430070..12430193 11..137 95 <- Plus
arm_2L 12430278..12430693 138..553 100 <- Plus
arm_2L 12430747..12430787 554..594 100   Plus

BO14602.5prime Sequence

608 bp (608 high quality bases) assembled on 2006-06-02

> BO14602.5prime
GAAGTTATCAGTCGACATGATTCAGTACGATACTGTGCAGATCAAGAATG
TATCATGGCAGCCGGAACTGCATACGGAGGGCACCTATGTGTGCTCTTTT
CCAGAGCCCCCGCTGCCGGAGGCCCATCTGAAACCGGGCACCTGGCATGG
CCATCTGGAGCCGTATCAGCGGCTCTTCTATCATCAAACGATGAACTCGG
TGCGCTCGAGCAAGCGGTACCGTGCCAATCCGAACATCCCGAAGGATACG
CTGGACTTTTCGCTGCAGTCGCGCTACGATCACACCCGCGAAGCATTTCC
GGACAAGGTGGACTACGTGATGCAGAGGGAGACGTGCCGCGCCATAAGTA
GCTGGTCAGCTCCTGGGGCGGCCAAGGAAATTGGTTCCCAACTCAAATCA
TTTCGGGTGTTGCGCAACACGCGCTTCATTCGGCGCAAGCAGGAGGACGT
ATTGGGTCATCCACTTCGCATAGGCGGTTGTAAGGAAAAGATTCATCCGC
ACAGCGTGAAGCTCATTTGCAGCGGTGTCCACAACCAGCTGGTGAACAAT
GGATTCTCGCGCCAGACCTCCGACGGCAACTTCTTCCGCTATGCAAGCTT
TCTAGACC

BO14602.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5435-PA 579 CG5435-RA 1..576 17..592 2830 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5435-RB 929 CG5435-RB 106..681 17..592 2850 99.7 Plus
CG5435-RA 903 CG5435-RA 80..655 17..592 2850 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12430277..12430694 474..57 2090 100 Minus
2L 23513712 2L 12430075..12430195 592..472 575 98.3 Minus
2L 23513712 2L 12430746..12430787 58..17 210 100 Minus
Blast to na_te.dros performed on 2015-02-02 07:35:17 has no hits.

BO14602.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:49 Download gff for BO14602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5435-PA 1..579 17..593 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:37 Download gff for BO14602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5435-PA 1..579 17..593 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:44:06 Download gff for BO14602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 80..660 17..600 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:13:38 Download gff for BO14602.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 80..660 17..600 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:13:38 Download gff for BO14602.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12430070..12430193 474..600 95 <- Minus
2L 12430278..12430693 58..473 100 <- Minus
2L 12430747..12430787 17..57 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:44:06 Download gff for BO14602.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12430070..12430193 474..600 95 <- Minus
arm_2L 12430278..12430693 58..473 100 <- Minus
arm_2L 12430747..12430787 17..57 100   Minus

BO14602.complete Sequence

610 bp (610 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633189

> BO14602.complete
GAAGTTATCAGTCGACATGATTCAGTACGATACTGTGCAGATCAAGAATG
TATCATGGCAGCCGGAACTGCATACGGAGGGCACCTATGTGTGCTCTTTT
CCAGAGCCCCCGCTGCCGGAGGCCCATCTGAAACCGGGCACCTGGCATGG
CCATCTGGAGCCGTATCAGCGGCTCTTCTATCATCAAACGATGAACTCGG
TGCGCTCGAGCAAGCGGTACCGTGCCAATCCGAACATCCCGAAGGATACG
CTGGACTTTTCGCTGCAGTCGCGCTACGATCACACCCGCGAAGCATTTCC
GGACAAGGTGGACTACGTGATGCAGAGGGAGACGTGCCGCGCCATAAGTA
GCTGGTCAGCTCCTGGGGCGGCCAAGGAAATTGGTTCCCAACTCAAATCA
TTTCGGGTGTTGCGCAACACGCGCTTCATTCGGCGCAAGCAGGAGGACGT
ATTGGGTCATCCACTTCGCATAGGCGGTTGTAAGGAAAAGATTCATCCGC
ACAGCGTGAAGCTCATTTGCAGCGGTGTCCACAACCAGCTGGTGAACAAT
GGATTCTCGCGCCAGACCTCCGACGGCAACTTCTTCCGCTATGCAAGCTT
TCTAGACCAT

BO14602.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5435-RB 579 CG5435-PB 1..576 17..592 2850 99.7 Plus
CG5435-RA 579 CG5435-PA 1..576 17..592 2850 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5435-RB 929 CG5435-RB 106..681 17..592 2850 99.7 Plus
CG5435-RA 903 CG5435-RA 80..655 17..592 2850 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12430277..12430694 474..57 2090 100 Minus
2L 23513712 2L 12430075..12430195 592..472 575 98.3 Minus
2L 23513712 2L 12430746..12430787 58..17 210 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:28:40 has no hits.

BO14602.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:59 Download gff for BO14602.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 1..579 17..593 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:41 Download gff for BO14602.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 107..687 17..600 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:07 Download gff for BO14602.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 80..655 17..594 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:00 Download gff for BO14602.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 107..687 17..600 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:08 Download gff for BO14602.complete
Subject Subject Range Query Range Percent Splice Strand
CG5435-RA 80..655 17..594 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:08 Download gff for BO14602.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12430073..12430193 474..594 96 <- Minus
2L 12430278..12430693 58..473 100 <- Minus
2L 12430747..12430787 17..57 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:07 Download gff for BO14602.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12430073..12430193 474..594 96 <- Minus
arm_2L 12430278..12430693 58..473 100 <- Minus
arm_2L 12430747..12430787 17..57 100   Minus

BO14602.pep Sequence

Translation from 16 to 610

> BO14602.pep
MIQYDTVQIKNVSWQPELHTEGTYVCSFPEPPLPEAHLKPGTWHGHLEPY
QRLFYHQTMNSVRSSKRYRANPNIPKDTLDFSLQSRYDHTREAFPDKVDY
VMQRETCRAISSWSAPGAAKEIGSQLKSFRVLRNTRFIRRKQEDVLGHPL
RIGGCKEKIHPHSVKLICSGVHNQLVNNGFSRQTSDGNFFRYASFLDH

BO14602.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5435-PB 192 CG5435-PB 1..192 1..192 1047 100 Plus
CG5435-PA 192 CG5435-PA 1..192 1..192 1047 100 Plus