Clone Sequence Records
BO14602.3prime Sequence
608 bp (608 high quality bases) assembled on 2006-06-02
> BO14602.3prime
ATGGTCTAGAAAGCTTGCATAGCGGAAGAAGTTGCCGTCGGAGGTCTGGC
GCGAGAATCCATTGTTCACCAGCTGGTTGTGGACACCGCTGCAAATGAGC
TTCACGCTGTGCGGATGAATCTTTTCCTTACAACCGCCTATGCGAAGTGG
ATGACCCAATACGTCCTCCTGCTTGCGCCGAATGAAGCGCGTGTTGCGCA
ACACCCGAAATGATTTGAGTTGGGAACCAATTTCCTTGGCCGCCCCAGGA
GCTGACCAGCTACTTATGGCGCGGCACGTCTCCCTCTGCATCACGTAGTC
CACCTTGTCCGGAAATGCTTCGCGGGTGTGATCGTAGCGCGACTGCAGCG
AAAAGTCCAGCGTATCCTTCGGGATGTTCGGATTGGCACGGTACCGCTTG
CTCGAGCGCACCGAGTTCATCGTTTGATGATAGAAGAGCCGCTGATACGG
CTCCAGATGGCCATGCCAGGTGCCCGGTTTCAGATGGGCCTCCGGCAGCG
GGGGCTCTGGAAAAGAGCACACATAGGTGCCCTCCGTATGCAGTTCCGGC
TGCCATGATACATTCTTGATCTGCACAGTATCGTACTGAATCATGTCGAC
TGATAACT
BO14602.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5435-PA | 579 | CG5435-RA | 1..576 | 594..19 | 2830 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5435-RB | 929 | CG5435-RB | 106..681 | 594..19 | 2850 | 99.7 | Minus |
CG5435-RA | 903 | CG5435-RA | 80..655 | 594..19 | 2850 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12430277..12430694 | 137..554 | 2090 | 100 | Plus |
2L | 23513712 | 2L | 12430075..12430195 | 19..139 | 575 | 98.3 | Plus |
2L | 23513712 | 2L | 12430746..12430787 | 553..594 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:02:51 has no hits.
BO14602.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:48 Download gff for
BO14602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-PA | 1..579 | 18..594 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:35 Download gff for
BO14602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-PA | 1..579 | 18..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:49:11 Download gff for
BO14602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-RA | 80..660 | 11..594 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:41:28 Download gff for
BO14602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-RA | 80..660 | 11..594 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:41:28 Download gff for
BO14602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12430747..12430787 | 554..594 | 100 | | Plus |
2L | 12430278..12430693 | 138..553 | 100 | <- | Plus |
2L | 12430070..12430193 | 11..137 | 95 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:49:11 Download gff for
BO14602.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12430070..12430193 | 11..137 | 95 | <- | Plus |
arm_2L | 12430278..12430693 | 138..553 | 100 | <- | Plus |
arm_2L | 12430747..12430787 | 554..594 | 100 | | Plus |
BO14602.5prime Sequence
608 bp (608 high quality bases) assembled on 2006-06-02
> BO14602.5prime
GAAGTTATCAGTCGACATGATTCAGTACGATACTGTGCAGATCAAGAATG
TATCATGGCAGCCGGAACTGCATACGGAGGGCACCTATGTGTGCTCTTTT
CCAGAGCCCCCGCTGCCGGAGGCCCATCTGAAACCGGGCACCTGGCATGG
CCATCTGGAGCCGTATCAGCGGCTCTTCTATCATCAAACGATGAACTCGG
TGCGCTCGAGCAAGCGGTACCGTGCCAATCCGAACATCCCGAAGGATACG
CTGGACTTTTCGCTGCAGTCGCGCTACGATCACACCCGCGAAGCATTTCC
GGACAAGGTGGACTACGTGATGCAGAGGGAGACGTGCCGCGCCATAAGTA
GCTGGTCAGCTCCTGGGGCGGCCAAGGAAATTGGTTCCCAACTCAAATCA
TTTCGGGTGTTGCGCAACACGCGCTTCATTCGGCGCAAGCAGGAGGACGT
ATTGGGTCATCCACTTCGCATAGGCGGTTGTAAGGAAAAGATTCATCCGC
ACAGCGTGAAGCTCATTTGCAGCGGTGTCCACAACCAGCTGGTGAACAAT
GGATTCTCGCGCCAGACCTCCGACGGCAACTTCTTCCGCTATGCAAGCTT
TCTAGACC
BO14602.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5435-PA | 579 | CG5435-RA | 1..576 | 17..592 | 2830 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5435-RB | 929 | CG5435-RB | 106..681 | 17..592 | 2850 | 99.7 | Plus |
CG5435-RA | 903 | CG5435-RA | 80..655 | 17..592 | 2850 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:35:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12430277..12430694 | 474..57 | 2090 | 100 | Minus |
2L | 23513712 | 2L | 12430075..12430195 | 592..472 | 575 | 98.3 | Minus |
2L | 23513712 | 2L | 12430746..12430787 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 07:35:17 has no hits.
BO14602.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:49 Download gff for
BO14602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-PA | 1..579 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:37 Download gff for
BO14602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-PA | 1..579 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:44:06 Download gff for
BO14602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-RA | 80..660 | 17..600 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:13:38 Download gff for
BO14602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-RA | 80..660 | 17..600 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:13:38 Download gff for
BO14602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12430070..12430193 | 474..600 | 95 | <- | Minus |
2L | 12430278..12430693 | 58..473 | 100 | <- | Minus |
2L | 12430747..12430787 | 17..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:44:06 Download gff for
BO14602.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12430070..12430193 | 474..600 | 95 | <- | Minus |
arm_2L | 12430278..12430693 | 58..473 | 100 | <- | Minus |
arm_2L | 12430747..12430787 | 17..57 | 100 | | Minus |
BO14602.complete Sequence
610 bp (610 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633189
> BO14602.complete
GAAGTTATCAGTCGACATGATTCAGTACGATACTGTGCAGATCAAGAATG
TATCATGGCAGCCGGAACTGCATACGGAGGGCACCTATGTGTGCTCTTTT
CCAGAGCCCCCGCTGCCGGAGGCCCATCTGAAACCGGGCACCTGGCATGG
CCATCTGGAGCCGTATCAGCGGCTCTTCTATCATCAAACGATGAACTCGG
TGCGCTCGAGCAAGCGGTACCGTGCCAATCCGAACATCCCGAAGGATACG
CTGGACTTTTCGCTGCAGTCGCGCTACGATCACACCCGCGAAGCATTTCC
GGACAAGGTGGACTACGTGATGCAGAGGGAGACGTGCCGCGCCATAAGTA
GCTGGTCAGCTCCTGGGGCGGCCAAGGAAATTGGTTCCCAACTCAAATCA
TTTCGGGTGTTGCGCAACACGCGCTTCATTCGGCGCAAGCAGGAGGACGT
ATTGGGTCATCCACTTCGCATAGGCGGTTGTAAGGAAAAGATTCATCCGC
ACAGCGTGAAGCTCATTTGCAGCGGTGTCCACAACCAGCTGGTGAACAAT
GGATTCTCGCGCCAGACCTCCGACGGCAACTTCTTCCGCTATGCAAGCTT
TCTAGACCAT
BO14602.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:28:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5435-RB | 579 | CG5435-PB | 1..576 | 17..592 | 2850 | 99.7 | Plus |
CG5435-RA | 579 | CG5435-PA | 1..576 | 17..592 | 2850 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5435-RB | 929 | CG5435-RB | 106..681 | 17..592 | 2850 | 99.7 | Plus |
CG5435-RA | 903 | CG5435-RA | 80..655 | 17..592 | 2850 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:28:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12430277..12430694 | 474..57 | 2090 | 100 | Minus |
2L | 23513712 | 2L | 12430075..12430195 | 592..472 | 575 | 98.3 | Minus |
2L | 23513712 | 2L | 12430746..12430787 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:28:40 has no hits.
BO14602.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:59 Download gff for
BO14602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-RA | 1..579 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:41 Download gff for
BO14602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-RA | 107..687 | 17..600 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:07 Download gff for
BO14602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-RA | 80..655 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:00 Download gff for
BO14602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-RA | 107..687 | 17..600 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:08 Download gff for
BO14602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5435-RA | 80..655 | 17..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:08 Download gff for
BO14602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12430073..12430193 | 474..594 | 96 | <- | Minus |
2L | 12430278..12430693 | 58..473 | 100 | <- | Minus |
2L | 12430747..12430787 | 17..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:07 Download gff for
BO14602.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12430073..12430193 | 474..594 | 96 | <- | Minus |
arm_2L | 12430278..12430693 | 58..473 | 100 | <- | Minus |
arm_2L | 12430747..12430787 | 17..57 | 100 | | Minus |
BO14602.pep Sequence
Translation from 16 to 610
> BO14602.pep
MIQYDTVQIKNVSWQPELHTEGTYVCSFPEPPLPEAHLKPGTWHGHLEPY
QRLFYHQTMNSVRSSKRYRANPNIPKDTLDFSLQSRYDHTREAFPDKVDY
VMQRETCRAISSWSAPGAAKEIGSQLKSFRVLRNTRFIRRKQEDVLGHPL
RIGGCKEKIHPHSVKLICSGVHNQLVNNGFSRQTSDGNFFRYASFLDH
BO14602.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5435-PB | 192 | CG5435-PB | 1..192 | 1..192 | 1047 | 100 | Plus |
CG5435-PA | 192 | CG5435-PA | 1..192 | 1..192 | 1047 | 100 | Plus |