Clone Sequence Records
BO14603.3prime Sequence
566 bp (566 high quality bases) assembled on 2006-06-02
> BO14603.3prime
ATGGTCTAGAAAGCTTGCCGCCCCACGATTTTTCACAAAGCCGTAGATGA
GTCGAAATGTCAGGTTGCAGGAGAATGCCCAGGCGGGCACCGAAATGGCA
TTGGCCACGCCAGTAGGAAAACTAAGAAGTCCTGTGAACGGAGCCAGGCT
GATCGCTTCATCGATGATCATGACGGGCGTTCCACGATTCCGGATGCTGA
TAAACACGGTTATTGCTGAGAGCAGCACCTTAGATCCGTAGAACATGGCC
GTATCGATGCTTATCCGCATGAAGTTCTCCATTCCCCGGGCAGATTTCAG
TTTCGCCTCCGCCTCTGATACTTTACGCTCGGCGCGCATAATTTTGATGG
TCCTGGCGTACTCTCCGGAATGCTCCGCATTGCTGACCACCTCCACTTGC
TTCCGGGCATCGTCCAGTTCTGTCTGCAACTGCCGAATTTCCGCGGAGTT
CCTTACGCCCCACAACCGCGACACTTTGAGGTAGTTCCTTATGAAATCTG
GCAGGATTGTGTTCAGCAGGCTGAGCAGGGCGATGAGGGCAAACAGTGTC
ATGTCGACTGATAACT
BO14603.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32022-PA | 537 | CG32022-RA | 1..534 | 552..19 | 2670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32022-RB | 938 | CG32022-RB | 240..774 | 553..19 | 2675 | 100 | Minus |
| CG32022-RA | 792 | CG32022-RA | 94..628 | 553..19 | 2675 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8720444..8720905 | 19..480 | 2310 | 100 | Plus |
| 3L | 28110227 | 3L | 8720961..8721033 | 481..553 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:48:26 has no hits.
BO14603.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:50 Download gff for
BO14603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32022-PA | 1..537 | 16..552 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:38 Download gff for
BO14603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32022-PA | 1..537 | 16..552 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:57:00 Download gff for
BO14603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32022-RA | 88..628 | 19..560 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:45 Download gff for
BO14603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32022-RA | 88..628 | 19..560 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:45 Download gff for
BO14603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8720444..8720905 | 19..480 | 100 | <- | Plus |
| 3L | 8720961..8721039 | 481..560 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:57:00 Download gff for
BO14603.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8713544..8714005 | 19..480 | 100 | <- | Plus |
| arm_3L | 8714061..8714139 | 481..560 | 95 | | Plus |
BO14603.5prime Sequence
566 bp (566 high quality bases) assembled on 2006-06-16
> BO14603.5prime
GAAGTTATCAGTCGACATGACACTGTTTGCCCTCATCGCCCTGCTCAGCC
TGCTGAACACAATCCTGCCAGATTTCATAAGGAACTACCTCAAAGTGTCG
CGGTTGTGGGGCGTAAGGAACTCCGCGGAAATTCGGCAGTTGCAGACAGA
ACTGGACGATGCCCGGAAGCAAGTGGAGGTGGTCAGCAATGCGGAGCATT
CCGGAGAGTACGCCAGGACCATCAAAATTATGCGCGCCGAGCGTAAAGTA
TCAGAGGCGGAGGCGAAACTGAAATCTGCCCGGGGAATGGAGAACTTCAT
GCGGATAAGCATCGATACGGCCATGTTCTACGGATCTAAGGTGCTGCTCT
CAGCAATAACCGTGTTTATCAGCATCCGGAATCGTGGAACGCCCGTCATG
ATCATCGATGAAGCGATCAGCCTGGCTCCGTTCACAGGACTTCTTAGTTT
TCCTACTGGCGTGGCCAATGCCATTTCGGTGCCCGCCTGGGCATTCTCCT
GCAACCTGACATTTCGACTCATCTACGGCTTTGTGAAAAATCGTGGGGCG
GCAAGCTTTCTAGACC
BO14603.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32022-PA | 537 | CG32022-RA | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32022-RB | 938 | CG32022-RB | 240..774 | 16..550 | 2675 | 100 | Plus |
| CG32022-RA | 792 | CG32022-RA | 94..628 | 16..550 | 2675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8720444..8720905 | 550..89 | 2310 | 100 | Minus |
| 3L | 28110227 | 3L | 8720961..8721033 | 88..16 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:27:52 has no hits.
BO14603.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:51 Download gff for
BO14603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32022-PA | 1..537 | 17..553 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:39 Download gff for
BO14603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32022-PA | 1..537 | 17..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:42:47 Download gff for
BO14603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32022-RA | 88..628 | 9..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:01:26 Download gff for
BO14603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32022-RA | 88..628 | 9..550 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:01:26 Download gff for
BO14603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8720444..8720905 | 89..550 | 100 | <- | Minus |
| 3L | 8720961..8721039 | 9..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:42:47 Download gff for
BO14603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8713544..8714005 | 89..550 | 100 | <- | Minus |
| arm_3L | 8714061..8714139 | 9..88 | 95 | | Minus |
BO14603.complete Sequence
568 bp (568 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633190
> BO14603.complete
GAAGTTATCAGTCGACATGACACTGTTTGCCCTCATCGCCCTGCTCAGCC
TGCTGAACACAATCCTGCCAGATTTCATAAGGAACTACCTCAAAGTGTCG
CGGTTGTGGGGCGTAAGGAACTCCGCGGAAATTCGGCAGTTGCAGACAGA
ACTGGACGATGCCCGGAAGCAAGTGGAGGTGGTCAGCAATGCGGAGCATT
CCGGAGAGTACGCCAGGACCATCAAAATTATGCGCGCCGAGCGTAAAGTA
TCAGAGGCGGAGGCGAAACTGAAATCTGCCCGGGGAATGGAGAACTTCAT
GCGGATAAGCATCGATACGGCCATGTTCTACGGATCTAAGGTGCTGCTCT
CAGCAATAACCGTGTTTATCAGCATCCGGAATCGTGGAACGCCCGTCATG
ATCATCGATGAAGCGATCAGCCTGGCTCCGTTCACAGGACTTCTTAGTTT
TCCTACTGGCGTGGCCAATGCCATTTCGGTGCCCGCCTGGGCATTCTCCT
GCAACCTGACATTTCGACTCATCTACGGCTTTGTGAAAAATCGTGGGGCG
GCAAGCTTTCTAGACCAT
BO14603.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32022-RB | 537 | CG32022-PB | 1..534 | 17..550 | 2670 | 100 | Plus |
| CG32022-RA | 537 | CG32022-PA | 1..534 | 17..550 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32022-RB | 938 | CG32022-RB | 240..774 | 16..550 | 2675 | 100 | Plus |
| CG32022-RA | 792 | CG32022-RA | 94..628 | 16..550 | 2675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:22:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8720444..8720905 | 550..89 | 2310 | 100 | Minus |
| 3L | 28110227 | 3L | 8720961..8721033 | 88..16 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:22:05 has no hits.
BO14603.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:00 Download gff for
BO14603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32022-RA | 1..537 | 17..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:42 Download gff for
BO14603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32022-RA | 234..774 | 9..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:11 Download gff for
BO14603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32022-RA | 95..628 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:01 Download gff for
BO14603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32022-RA | 234..774 | 9..550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:37 Download gff for
BO14603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32022-RA | 95..628 | 17..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:37 Download gff for
BO14603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8720441..8720905 | 89..552 | 99 | <- | Minus |
| 3L | 8720961..8721032 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:11 Download gff for
BO14603.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8713541..8714005 | 89..552 | 99 | <- | Minus |
| arm_3L | 8714061..8714132 | 17..88 | 100 | | Minus |
BO14603.pep Sequence
Translation from 16 to 568
> BO14603.pep
MTLFALIALLSLLNTILPDFIRNYLKVSRLWGVRNSAEIRQLQTELDDAR
KQVEVVSNAEHSGEYARTIKIMRAERKVSEAEAKLKSARGMENFMRISID
TAMFYGSKVLLSAITVFISIRNRGTPVMIIDEAISLAPFTGLLSFPTGVA
NAISVPAWAFSCNLTFRLIYGFVKNRGAASFLDH
BO14603.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32022-PB | 178 | CG32022-PB | 1..178 | 1..178 | 879 | 100 | Plus |
| CG32022-PA | 178 | CG32022-PA | 1..178 | 1..178 | 879 | 100 | Plus |
