Clone BO14605 Report

Search the DGRC for BO14605

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:146
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptRpL10Aa-RA
Protein status:BO14605.pep: validated full length
Sequenced Size:682

Clone Sequence Records

BO14605.3prime Sequence

680 bp (680 high quality bases) assembled on 2006-06-02

> BO14605.3prime
ATGGTCTAGAAAGCTTGCATAGAGCTGATGAGGTACGCCCAACGATGATT
TTATATGAAGTGAGCGCACATTCTGCCAGTTATCCTTCAGCAAGGACACT
AAAAAGTTGATCGATATTGCTATGTTTCGAGCTAGTTCCTCTGGGTGCAT
GCCAACATGGCCAACATTAACGGAAAGACATTCCATCCTTTTCATATGCT
TCTTTTTGGTAGATAGTATTTTGATTTTGGAACTCATAGATTCGCCACGA
GCCAAAGGAGTAAGAAATTTGCCCGCATTGGTGAGACCAGGACCCAGTAG
CCTTGGGATCTGCTTAATTATCGATTCGGAGGCCAGGAAGACATCGTAAG
CTTTGGACAACTTCTTTGTCAACTTGGGATCTTTGTTCAGCTTTTTCAAA
GCCTCCACATCTAGGCAATCAACTCCTATGGCTTTGGCCTTATAACAGTG
CTCCTGATCCCCGAAGACGCAGACCTTTAGTTGTGGAACCGCCAGGTGAT
GCAATAGTACACTTCCATGGAACCGCTTGCATTTGTCAGGATCATAATCC
CTCAGCCCAATCTGCAGCTCCACCGTCTCCAGGCAGTCTGGTCCTTTGGC
CTGCGAGTTCAGCAGGATATTTTTGACTGCAACGTAAATCGTATCGCGAG
AAACTTTCGACACCATGTCGACTGATAACT

BO14605.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3843-PA 651 RpL10Aa-RA 1..648 666..19 3240 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Aa-RA 784 CG3843-RA 58..705 666..19 3240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:20:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15037423..15038070 666..19 3240 100 Minus
Blast to na_te.dros performed 2015-02-12 04:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 3745..3776 596..627 106 81.2 Plus

BO14605.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:52 Download gff for BO14605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3843-PA 1..651 16..666 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:41 Download gff for BO14605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3843-PA 1..651 16..666 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:08 Download gff for BO14605.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL10Aa-RA 58..715 9..666 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:18 Download gff for BO14605.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL10Aa-RA 58..715 9..666 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:18 Download gff for BO14605.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15037423..15038080 9..666 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:08 Download gff for BO14605.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10863145..10863802 9..666 99   Minus

BO14605.5prime Sequence

684 bp (684 high quality bases) assembled on 2006-06-02

> BO14605.5prime
GAAGTTATCAGTCGACATGGTGTCGAAAGTTTCTCGCGATACGATTTACG
TTGCAGTCAAAAATATCCTGCTGAACTCGCAGGCCAAAGGACCAGACTGC
CTGGAGACGGTGGAGCTGCAGATTGGGCTGAGGGATTATGATCCTGACAA
ATGCAAGCGGTTCCATGGAAGTGTACTATTGCATCACCTGGCGGTTCCAC
AACTAAAGGTCTGCGTCTTCGGGGATCAGGAGCACTGTTATAAGGCCAAA
GCCATAGGAGTTGATTGCCTAGATGTGGAGGCTTTGAAAAAGCTGAACAA
AGATCCCAAGTTGACAAAGAAGTTGTCCAAAGCTTACGATGTCTTCCTGG
CCTCCGAATCGATAATTAAGCAGATCCCAAGGCTACTGGGTCCTGGTCTC
ACCAATGCGGGCAAATTTCTTACTCCTTTGGCTCGTGGCGAATCTATGAG
TTCCAAAATCAAAATACTATCTACCAAAAAGAAGCATATGAAAAGGATGG
AATGTCTTTCCGTTAATGTTGGCCATGTTGGCATGCACCCAGAGGAACTA
GCTCGAAACATAGCAATATCGATCAACTTTTTAGTGTCCTTGCTGAAGGA
TAACTGGCAGAATGTGCGCTCACTTCATATAAAATCATCGTTGGGCGTAC
CTCATCAGCTCTATGCAAGCTTTCTAGACCATTC

BO14605.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3843-PA 651 RpL10Aa-RA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Aa-RA 784 CG3843-RA 58..705 17..664 3240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15037423..15038070 17..664 3240 100 Plus
Blast to na_te.dros performed 2015-02-09 22:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 3745..3776 87..56 106 81.2 Minus

BO14605.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:53 Download gff for BO14605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3843-PA 1..651 17..667 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:42 Download gff for BO14605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3843-PA 1..651 17..667 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:22:01 Download gff for BO14605.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL10Aa-RA 58..715 17..674 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:46:50 Download gff for BO14605.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL10Aa-RA 58..715 17..674 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:46:50 Download gff for BO14605.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15037423..15038080 17..674 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:22:01 Download gff for BO14605.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10863145..10863802 17..674 99   Plus

BO14605.complete Sequence

682 bp (682 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633191

> BO14605.complete
GAAGTTATCAGTCGACATGGTGTCGAAAGTTTCTCGCGATACGATTTACG
TTGCAGTCAAAAATATCCTGCTGAACTCGCAGGCCAAAGGACCAGACTGC
CTGGAGACGGTGGAGCTGCAGATTGGGCTGAGGGATTATGATCCTGACAA
ATGCAAGCGGTTCCATGGAAGTGTACTATTGCATCACCTGGCGGTTCCAC
AACTAAAGGTCTGCGTCTTCGGGGATCAGGAGCACTGTTATAAGGCCAAA
GCCATAGGAGTTGATTGCCTAGATGTGGAGGCTTTGAAAAAGCTGAACAA
AGATCCCAAGTTGACAAAGAAGTTGTCCAAAGCTTACGATGTCTTCCTGG
CCTCCGAATCGATAATTAAGCAGATCCCAAGGCTACTGGGTCCTGGTCTC
ACCAATGCGGGCAAATTTCTTACTCCTTTGGCTCGTGGCGAATCTATGAG
TTCCAAAATCAAAATACTATCTACCAAAAAGAAGCATATGAAAAGGATGG
AATGTCTTTCCGTTAATGTTGGCCATGTTGGCATGCACCCAGAGGAACTA
GCTCGAAACATAGCAATATCGATCAACTTTTTAGTGTCCTTGCTGAAGGA
TAACTGGCAGAATGTGCGCTCACTTCATATAAAATCATCGTTGGGCGTAC
CTCATCAGCTCTATGCAAGCTTTCTAGACCAT

BO14605.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Aa-RA 651 CG3843-PA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Aa-RA 784 CG3843-RA 58..705 17..664 3240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15037423..15038070 17..664 3240 100 Plus
Blast to na_te.dros performed 2014-11-27 01:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 3745..3776 87..56 106 81.2 Minus

BO14605.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:01 Download gff for BO14605.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Aa-RA 1..651 17..667 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:44 Download gff for BO14605.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Aa-RA 58..715 17..674 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:44 Download gff for BO14605.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Aa-RA 58..705 17..666 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:02 Download gff for BO14605.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Aa-RA 58..715 17..674 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:35 Download gff for BO14605.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Aa-RA 58..705 17..666 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:35 Download gff for BO14605.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15037423..15038070 17..666 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:44 Download gff for BO14605.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10863145..10863792 17..666 99   Plus

BO14605.pep Sequence

Translation from 16 to 682

> BO14605.pep
MVSKVSRDTIYVAVKNILLNSQAKGPDCLETVELQIGLRDYDPDKCKRFH
GSVLLHHLAVPQLKVCVFGDQEHCYKAKAIGVDCLDVEALKKLNKDPKLT
KKLSKAYDVFLASESIIKQIPRLLGPGLTNAGKFLTPLARGESMSSKIKI
LSTKKKHMKRMECLSVNVGHVGMHPEELARNIAISINFLVSLLKDNWQNV
RSLHIKSSLGVPHQLYASFLDH

BO14605.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Aa-PA 216 CG3843-PA 1..216 1..216 1113 100 Plus
RpL10Ab-PA 217 CG7283-PA 1..217 1..216 676 63.6 Plus
RpL10Ab-PF 57 CG7283-PF 1..53 1..53 147 60.4 Plus