Clone Sequence Records
BO14605.3prime Sequence
680 bp (680 high quality bases) assembled on 2006-06-02
> BO14605.3prime
ATGGTCTAGAAAGCTTGCATAGAGCTGATGAGGTACGCCCAACGATGATT
TTATATGAAGTGAGCGCACATTCTGCCAGTTATCCTTCAGCAAGGACACT
AAAAAGTTGATCGATATTGCTATGTTTCGAGCTAGTTCCTCTGGGTGCAT
GCCAACATGGCCAACATTAACGGAAAGACATTCCATCCTTTTCATATGCT
TCTTTTTGGTAGATAGTATTTTGATTTTGGAACTCATAGATTCGCCACGA
GCCAAAGGAGTAAGAAATTTGCCCGCATTGGTGAGACCAGGACCCAGTAG
CCTTGGGATCTGCTTAATTATCGATTCGGAGGCCAGGAAGACATCGTAAG
CTTTGGACAACTTCTTTGTCAACTTGGGATCTTTGTTCAGCTTTTTCAAA
GCCTCCACATCTAGGCAATCAACTCCTATGGCTTTGGCCTTATAACAGTG
CTCCTGATCCCCGAAGACGCAGACCTTTAGTTGTGGAACCGCCAGGTGAT
GCAATAGTACACTTCCATGGAACCGCTTGCATTTGTCAGGATCATAATCC
CTCAGCCCAATCTGCAGCTCCACCGTCTCCAGGCAGTCTGGTCCTTTGGC
CTGCGAGTTCAGCAGGATATTTTTGACTGCAACGTAAATCGTATCGCGAG
AAACTTTCGACACCATGTCGACTGATAACT
BO14605.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3843-PA | 651 | RpL10Aa-RA | 1..648 | 666..19 | 3240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:20:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Aa-RA | 784 | CG3843-RA | 58..705 | 666..19 | 3240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:20:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15037423..15038070 | 666..19 | 3240 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 04:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 3745..3776 | 596..627 | 106 | 81.2 | Plus |
BO14605.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:52 Download gff for
BO14605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3843-PA | 1..651 | 16..666 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:41 Download gff for
BO14605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3843-PA | 1..651 | 16..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:08 Download gff for
BO14605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Aa-RA | 58..715 | 9..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:10:18 Download gff for
BO14605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Aa-RA | 58..715 | 9..666 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:10:18 Download gff for
BO14605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15037423..15038080 | 9..666 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:08 Download gff for
BO14605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10863145..10863802 | 9..666 | 99 | | Minus |
BO14605.5prime Sequence
684 bp (684 high quality bases) assembled on 2006-06-02
> BO14605.5prime
GAAGTTATCAGTCGACATGGTGTCGAAAGTTTCTCGCGATACGATTTACG
TTGCAGTCAAAAATATCCTGCTGAACTCGCAGGCCAAAGGACCAGACTGC
CTGGAGACGGTGGAGCTGCAGATTGGGCTGAGGGATTATGATCCTGACAA
ATGCAAGCGGTTCCATGGAAGTGTACTATTGCATCACCTGGCGGTTCCAC
AACTAAAGGTCTGCGTCTTCGGGGATCAGGAGCACTGTTATAAGGCCAAA
GCCATAGGAGTTGATTGCCTAGATGTGGAGGCTTTGAAAAAGCTGAACAA
AGATCCCAAGTTGACAAAGAAGTTGTCCAAAGCTTACGATGTCTTCCTGG
CCTCCGAATCGATAATTAAGCAGATCCCAAGGCTACTGGGTCCTGGTCTC
ACCAATGCGGGCAAATTTCTTACTCCTTTGGCTCGTGGCGAATCTATGAG
TTCCAAAATCAAAATACTATCTACCAAAAAGAAGCATATGAAAAGGATGG
AATGTCTTTCCGTTAATGTTGGCCATGTTGGCATGCACCCAGAGGAACTA
GCTCGAAACATAGCAATATCGATCAACTTTTTAGTGTCCTTGCTGAAGGA
TAACTGGCAGAATGTGCGCTCACTTCATATAAAATCATCGTTGGGCGTAC
CTCATCAGCTCTATGCAAGCTTTCTAGACCATTC
BO14605.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3843-PA | 651 | RpL10Aa-RA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Aa-RA | 784 | CG3843-RA | 58..705 | 17..664 | 3240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:37:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15037423..15038070 | 17..664 | 3240 | 100 | Plus |
Blast to na_te.dros performed 2015-02-09 22:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 3745..3776 | 87..56 | 106 | 81.2 | Minus |
BO14605.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:53 Download gff for
BO14605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3843-PA | 1..651 | 17..667 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:42 Download gff for
BO14605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3843-PA | 1..651 | 17..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:22:01 Download gff for
BO14605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Aa-RA | 58..715 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:46:50 Download gff for
BO14605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Aa-RA | 58..715 | 17..674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:46:50 Download gff for
BO14605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15037423..15038080 | 17..674 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:22:01 Download gff for
BO14605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10863145..10863802 | 17..674 | 99 | | Plus |
BO14605.complete Sequence
682 bp (682 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633191
> BO14605.complete
GAAGTTATCAGTCGACATGGTGTCGAAAGTTTCTCGCGATACGATTTACG
TTGCAGTCAAAAATATCCTGCTGAACTCGCAGGCCAAAGGACCAGACTGC
CTGGAGACGGTGGAGCTGCAGATTGGGCTGAGGGATTATGATCCTGACAA
ATGCAAGCGGTTCCATGGAAGTGTACTATTGCATCACCTGGCGGTTCCAC
AACTAAAGGTCTGCGTCTTCGGGGATCAGGAGCACTGTTATAAGGCCAAA
GCCATAGGAGTTGATTGCCTAGATGTGGAGGCTTTGAAAAAGCTGAACAA
AGATCCCAAGTTGACAAAGAAGTTGTCCAAAGCTTACGATGTCTTCCTGG
CCTCCGAATCGATAATTAAGCAGATCCCAAGGCTACTGGGTCCTGGTCTC
ACCAATGCGGGCAAATTTCTTACTCCTTTGGCTCGTGGCGAATCTATGAG
TTCCAAAATCAAAATACTATCTACCAAAAAGAAGCATATGAAAAGGATGG
AATGTCTTTCCGTTAATGTTGGCCATGTTGGCATGCACCCAGAGGAACTA
GCTCGAAACATAGCAATATCGATCAACTTTTTAGTGTCCTTGCTGAAGGA
TAACTGGCAGAATGTGCGCTCACTTCATATAAAATCATCGTTGGGCGTAC
CTCATCAGCTCTATGCAAGCTTTCTAGACCAT
BO14605.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:35:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Aa-RA | 651 | CG3843-PA | 1..648 | 17..664 | 3240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Aa-RA | 784 | CG3843-RA | 58..705 | 17..664 | 3240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15037423..15038070 | 17..664 | 3240 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:35:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 3745..3776 | 87..56 | 106 | 81.2 | Minus |
BO14605.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:01 Download gff for
BO14605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Aa-RA | 1..651 | 17..667 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:44 Download gff for
BO14605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Aa-RA | 58..715 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:44 Download gff for
BO14605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Aa-RA | 58..705 | 17..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:02 Download gff for
BO14605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Aa-RA | 58..715 | 17..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:35 Download gff for
BO14605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Aa-RA | 58..705 | 17..666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:35 Download gff for
BO14605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15037423..15038070 | 17..666 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:44 Download gff for
BO14605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10863145..10863792 | 17..666 | 99 | | Plus |
BO14605.pep Sequence
Translation from 16 to 682
> BO14605.pep
MVSKVSRDTIYVAVKNILLNSQAKGPDCLETVELQIGLRDYDPDKCKRFH
GSVLLHHLAVPQLKVCVFGDQEHCYKAKAIGVDCLDVEALKKLNKDPKLT
KKLSKAYDVFLASESIIKQIPRLLGPGLTNAGKFLTPLARGESMSSKIKI
LSTKKKHMKRMECLSVNVGHVGMHPEELARNIAISINFLVSLLKDNWQNV
RSLHIKSSLGVPHQLYASFLDH
BO14605.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Aa-PA | 216 | CG3843-PA | 1..216 | 1..216 | 1113 | 100 | Plus |
RpL10Ab-PA | 217 | CG7283-PA | 1..217 | 1..216 | 676 | 63.6 | Plus |
RpL10Ab-PF | 57 | CG7283-PF | 1..53 | 1..53 | 147 | 60.4 | Plus |