Clone Sequence Records
BO14606.3prime Sequence
476 bp (476 high quality bases) assembled on 2006-06-02
> BO14606.3prime
ATGGTCTAGAAAGCTTGCCTTCTGGCTTATCATCCATACGAATTCCTCGT
AGTTGATCATGCCATCCCCATCAAAATCAGCCTCGCGAATCATCTCATCG
ATCTCCTCGTCGGTGACCTTTTCGCCCAGATTGATCATCACAAAGCGAAG
CTCAGCTGGTGATATAAAGCCATCGCCATCACGATCAAAAATCTTGAATG
CCTCACGCATTTCCTCCTCAGTGTCAGTTTCCCGCATTTGCTTGGCCATT
ATACCGCAGAACTCAGTGAAGTTCAGTTGGCCATTGTTGTTGTTCTCGGC
CTCAGCTATCAAATCTTGCAACTCGGCCTCCGTTGGATTCTGGCCCAAGG
TGCGCATCAATGTGCCCAGCTCACGGGTGGCGATCTTGCCGGTTCCCTCC
TTGTCGAACTGGACAAAGGCATCCTTGAACTCGGCAATCTGCTCCTCCGT
TAGTTCGGACATGTCGACTGATAACT
BO14606.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17769-PA | 447 | And-RA | 1..444 | 462..19 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acam-RB | 1224 | CG17769-RB | 734..1177 | 462..19 | 2220 | 100 | Minus |
Acam-RA | 596 | CG17769-RA | 106..549 | 462..19 | 2220 | 100 | Minus |
CG17770-RA | 1224 | CG17770-RA | 734..1177 | 462..19 | 2220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25812644..25813087 | 462..19 | 2220 | 100 | Minus |
2R | 25286936 | 2R | 12269339..12269412 | 141..68 | 205 | 85.1 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:37:16 has no hits.
BO14606.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:54 Download gff for
BO14606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
And-PA | 1..447 | 18..462 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:43 Download gff for
BO14606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17769-PA | 1..447 | 18..462 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:41:26 Download gff for
BO14606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17770-RA | 725..1177 | 19..474 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:49:34 Download gff for
BO14606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17770-RA | 725..1177 | 19..474 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:49:34 Download gff for
BO14606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25812635..25813087 | 19..474 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:41:26 Download gff for
BO14606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21638357..21638809 | 19..474 | 98 | | Minus |
BO14606.5prime Sequence
476 bp (476 high quality bases) assembled on 2006-06-16
> BO14606.5prime
GAAGTTATCAGTCGACATGTCCGAACTAACGGAGGAGCAGATTGCCGAGT
TCAAGGATGCCTTTGTCCAGTTCGACAAGGAGGGAACCGGCAAGATCGCC
ACCCGTGAGCTGGGCACATTGATGCGCACCTTGGGCCAGAATCCAACGGA
GGCCGAGTTGCAAGATTTGATAGCTGAGGCCGAGAACAACAACAATGGCC
AACTGAACTTCACTGAGTTCTGCGGTATAATGGCCAAGCAAATGCGGGAA
ACTGACACTGAGGAGGAAATGCGTGAGGCATTCAAGATTTTTGATCGTGA
TGGCGATGGCTTTATATCACCAGCTGAGCTTCGCTTTGTGATGATCAATC
TGGGCGAAAAGGTCACCGACGAGGAGATCGATGAGATGATTCGCGAGGCT
GATTTTGATGGGGATGGCATGATCAACTACGAGGAATTCGTATGGATGAT
AAGCCAGAAGGCAAGCTTTCTAGACC
BO14606.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17769-PA | 447 | And-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:54:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acam-RB | 1224 | CG17769-RB | 734..1177 | 17..460 | 2220 | 100 | Plus |
Acam-RA | 596 | CG17769-RA | 106..549 | 17..460 | 2220 | 100 | Plus |
CG17770-RA | 1224 | CG17770-RA | 734..1177 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25812644..25813087 | 17..460 | 2220 | 100 | Plus |
2R | 25286936 | 2R | 12269339..12269412 | 338..411 | 205 | 85.1 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:54:37 has no hits.
BO14606.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:55 Download gff for
BO14606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
And-PA | 1..447 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:45 Download gff for
BO14606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17769-PA | 1..447 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:40:50 Download gff for
BO14606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17770-RA | 725..1177 | 5..460 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:11 Download gff for
BO14606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17770-RA | 725..1177 | 5..460 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:11 Download gff for
BO14606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25812635..25813087 | 5..460 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:40:50 Download gff for
BO14606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21638357..21638809 | 5..460 | 98 | | Plus |
BO14606.complete Sequence
478 bp (478 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633192
> BO14606.complete
GAAGTTATCAGTCGACATGTCCGAACTAACGGAGGAGCAGATTGCCGAGT
TCAAGGATGCCTTTGTCCAGTTCGACAAGGAGGGAACCGGCAAGATCGCC
ACCCGTGAGCTGGGCACATTGATGCGCACCTTGGGCCAGAATCCAACGGA
GGCCGAGTTGCAAGATTTGATAGCTGAGGCCGAGAACAACAACAATGGCC
AACTGAACTTCACTGAGTTCTGCGGTATAATGGCCAAGCAAATGCGGGAA
ACTGACACTGAGGAGGAAATGCGTGAGGCATTCAAGATTTTTGATCGTGA
TGGCGATGGCTTTATATCACCAGCTGAGCTTCGCTTTGTGATGATCAATC
TGGGCGAAAAGGTCACCGACGAGGAGATCGATGAGATGATTCGCGAGGCT
GATTTTGATGGGGATGGCATGATCAACTACGAGGAATTCGTATGGATGAT
AAGCCAGAAGGCAAGCTTTCTAGACCAT
BO14606.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acam-RB | 447 | CG17769-PB | 1..444 | 17..460 | 2220 | 100 | Plus |
Acam-RA | 447 | CG17769-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Cam-RD | 450 | CG8472-PD | 325..428 | 338..441 | 235 | 81.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acam-RB | 1224 | CG17769-RB | 734..1177 | 17..460 | 2220 | 100 | Plus |
Acam-RA | 596 | CG17769-RA | 106..549 | 17..460 | 2220 | 100 | Plus |
CG17770-RA | 1224 | CG17770-RA | 734..1177 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25812644..25813087 | 17..460 | 2220 | 100 | Plus |
2R | 25286936 | 2R | 12269339..12269412 | 338..411 | 205 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:33:13 has no hits.
BO14606.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:19 Download gff for
BO14606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
And-RA | 1..447 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:57 Download gff for
BO14606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
And-RA | 97..549 | 5..460 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:17 Download gff for
BO14606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17770-RA | 734..1177 | 17..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:20 Download gff for
BO14606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
And-RA | 97..549 | 5..460 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:07 Download gff for
BO14606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17770-RA | 734..1177 | 17..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:07 Download gff for
BO14606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25812644..25813087 | 17..462 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:17 Download gff for
BO14606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21638366..21638809 | 17..462 | 99 | | Plus |
BO14606.pep Sequence
Translation from 16 to 478
> BO14606.pep
MSELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQD
LIAEAENNNNGQLNFTEFCGIMAKQMRETDTEEEMREAFKIFDRDGDGFI
SPAELRFVMINLGEKVTDEEIDEMIREADFDGDGMINYEEFVWMISQKAS
FLDH
BO14606.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acam-PB | 148 | CG17769-PB | 1..148 | 1..148 | 761 | 100 | Plus |
Acam-PA | 148 | CG17769-PA | 1..148 | 1..148 | 761 | 100 | Plus |
Cam-PD | 149 | CG8472-PD | 4..149 | 3..148 | 536 | 67.8 | Plus |
Cam-PC | 149 | CG8472-PC | 4..149 | 3..148 | 536 | 67.8 | Plus |
Cam-PE | 149 | CG8472-PE | 4..149 | 3..148 | 536 | 67.8 | Plus |
Cam-PD | 149 | CG8472-PD | 1..81 | 72..153 | 171 | 43.9 | Plus |
Cam-PC | 149 | CG8472-PC | 1..81 | 72..153 | 171 | 43.9 | Plus |