Clone BO14606 Report

Search the DGRC for BO14606

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:146
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptAnd-RA
Protein status:BO14606.pep: validated full length
Sequenced Size:478

Clone Sequence Records

BO14606.3prime Sequence

476 bp (476 high quality bases) assembled on 2006-06-02

> BO14606.3prime
ATGGTCTAGAAAGCTTGCCTTCTGGCTTATCATCCATACGAATTCCTCGT
AGTTGATCATGCCATCCCCATCAAAATCAGCCTCGCGAATCATCTCATCG
ATCTCCTCGTCGGTGACCTTTTCGCCCAGATTGATCATCACAAAGCGAAG
CTCAGCTGGTGATATAAAGCCATCGCCATCACGATCAAAAATCTTGAATG
CCTCACGCATTTCCTCCTCAGTGTCAGTTTCCCGCATTTGCTTGGCCATT
ATACCGCAGAACTCAGTGAAGTTCAGTTGGCCATTGTTGTTGTTCTCGGC
CTCAGCTATCAAATCTTGCAACTCGGCCTCCGTTGGATTCTGGCCCAAGG
TGCGCATCAATGTGCCCAGCTCACGGGTGGCGATCTTGCCGGTTCCCTCC
TTGTCGAACTGGACAAAGGCATCCTTGAACTCGGCAATCTGCTCCTCCGT
TAGTTCGGACATGTCGACTGATAACT

BO14606.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17769-PA 447 And-RA 1..444 462..19 2220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
Acam-RB 1224 CG17769-RB 734..1177 462..19 2220 100 Minus
Acam-RA 596 CG17769-RA 106..549 462..19 2220 100 Minus
CG17770-RA 1224 CG17770-RA 734..1177 462..19 2220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25812644..25813087 462..19 2220 100 Minus
2R 25286936 2R 12269339..12269412 141..68 205 85.1 Minus
Blast to na_te.dros performed on 2015-01-31 10:37:16 has no hits.

BO14606.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:54 Download gff for BO14606.3prime
Subject Subject Range Query Range Percent Splice Strand
And-PA 1..447 18..462 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:43 Download gff for BO14606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17769-PA 1..447 18..462 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:41:26 Download gff for BO14606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17770-RA 725..1177 19..474 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:49:34 Download gff for BO14606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17770-RA 725..1177 19..474 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:49:34 Download gff for BO14606.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25812635..25813087 19..474 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:41:26 Download gff for BO14606.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21638357..21638809 19..474 98   Minus

BO14606.5prime Sequence

476 bp (476 high quality bases) assembled on 2006-06-16

> BO14606.5prime
GAAGTTATCAGTCGACATGTCCGAACTAACGGAGGAGCAGATTGCCGAGT
TCAAGGATGCCTTTGTCCAGTTCGACAAGGAGGGAACCGGCAAGATCGCC
ACCCGTGAGCTGGGCACATTGATGCGCACCTTGGGCCAGAATCCAACGGA
GGCCGAGTTGCAAGATTTGATAGCTGAGGCCGAGAACAACAACAATGGCC
AACTGAACTTCACTGAGTTCTGCGGTATAATGGCCAAGCAAATGCGGGAA
ACTGACACTGAGGAGGAAATGCGTGAGGCATTCAAGATTTTTGATCGTGA
TGGCGATGGCTTTATATCACCAGCTGAGCTTCGCTTTGTGATGATCAATC
TGGGCGAAAAGGTCACCGACGAGGAGATCGATGAGATGATTCGCGAGGCT
GATTTTGATGGGGATGGCATGATCAACTACGAGGAATTCGTATGGATGAT
AAGCCAGAAGGCAAGCTTTCTAGACC

BO14606.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17769-PA 447 And-RA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
Acam-RB 1224 CG17769-RB 734..1177 17..460 2220 100 Plus
Acam-RA 596 CG17769-RA 106..549 17..460 2220 100 Plus
CG17770-RA 1224 CG17770-RA 734..1177 17..460 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25812644..25813087 17..460 2220 100 Plus
2R 25286936 2R 12269339..12269412 338..411 205 85.1 Plus
Blast to na_te.dros performed on 2015-02-04 01:54:37 has no hits.

BO14606.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:55 Download gff for BO14606.5prime
Subject Subject Range Query Range Percent Splice Strand
And-PA 1..447 17..461 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:45 Download gff for BO14606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17769-PA 1..447 17..461 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:40:50 Download gff for BO14606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17770-RA 725..1177 5..460 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:11 Download gff for BO14606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17770-RA 725..1177 5..460 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:11 Download gff for BO14606.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25812635..25813087 5..460 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:40:50 Download gff for BO14606.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21638357..21638809 5..460 98   Plus

BO14606.complete Sequence

478 bp (478 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633192

> BO14606.complete
GAAGTTATCAGTCGACATGTCCGAACTAACGGAGGAGCAGATTGCCGAGT
TCAAGGATGCCTTTGTCCAGTTCGACAAGGAGGGAACCGGCAAGATCGCC
ACCCGTGAGCTGGGCACATTGATGCGCACCTTGGGCCAGAATCCAACGGA
GGCCGAGTTGCAAGATTTGATAGCTGAGGCCGAGAACAACAACAATGGCC
AACTGAACTTCACTGAGTTCTGCGGTATAATGGCCAAGCAAATGCGGGAA
ACTGACACTGAGGAGGAAATGCGTGAGGCATTCAAGATTTTTGATCGTGA
TGGCGATGGCTTTATATCACCAGCTGAGCTTCGCTTTGTGATGATCAATC
TGGGCGAAAAGGTCACCGACGAGGAGATCGATGAGATGATTCGCGAGGCT
GATTTTGATGGGGATGGCATGATCAACTACGAGGAATTCGTATGGATGAT
AAGCCAGAAGGCAAGCTTTCTAGACCAT

BO14606.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
Acam-RB 447 CG17769-PB 1..444 17..460 2220 100 Plus
Acam-RA 447 CG17769-PA 1..444 17..460 2220 100 Plus
Cam-RD 450 CG8472-PD 325..428 338..441 235 81.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
Acam-RB 1224 CG17769-RB 734..1177 17..460 2220 100 Plus
Acam-RA 596 CG17769-RA 106..549 17..460 2220 100 Plus
CG17770-RA 1224 CG17770-RA 734..1177 17..460 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25812644..25813087 17..460 2220 100 Plus
2R 25286936 2R 12269339..12269412 338..411 205 85.1 Plus
Blast to na_te.dros performed on 2014-11-27 16:33:13 has no hits.

BO14606.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:19 Download gff for BO14606.complete
Subject Subject Range Query Range Percent Splice Strand
And-RA 1..447 17..461 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:57 Download gff for BO14606.complete
Subject Subject Range Query Range Percent Splice Strand
And-RA 97..549 5..460 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:17 Download gff for BO14606.complete
Subject Subject Range Query Range Percent Splice Strand
CG17770-RA 734..1177 17..462 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:20 Download gff for BO14606.complete
Subject Subject Range Query Range Percent Splice Strand
And-RA 97..549 5..460 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:07 Download gff for BO14606.complete
Subject Subject Range Query Range Percent Splice Strand
CG17770-RA 734..1177 17..462 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:07 Download gff for BO14606.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25812644..25813087 17..462 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:17 Download gff for BO14606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21638366..21638809 17..462 99   Plus

BO14606.pep Sequence

Translation from 16 to 478

> BO14606.pep
MSELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQD
LIAEAENNNNGQLNFTEFCGIMAKQMRETDTEEEMREAFKIFDRDGDGFI
SPAELRFVMINLGEKVTDEEIDEMIREADFDGDGMINYEEFVWMISQKAS
FLDH

BO14606.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Acam-PB 148 CG17769-PB 1..148 1..148 761 100 Plus
Acam-PA 148 CG17769-PA 1..148 1..148 761 100 Plus
Cam-PD 149 CG8472-PD 4..149 3..148 536 67.8 Plus
Cam-PC 149 CG8472-PC 4..149 3..148 536 67.8 Plus
Cam-PE 149 CG8472-PE 4..149 3..148 536 67.8 Plus
Cam-PD 149 CG8472-PD 1..81 72..153 171 43.9 Plus
Cam-PC 149 CG8472-PC 1..81 72..153 171 43.9 Plus