Clone Sequence Records
BO14610.5prime Sequence
695 bp (648 high quality bases) assembled on 2006-06-02
> BO14610.5prime
GAAGTTATCAGTCGACATGGCACGCCTGGTGTTTACGGAGAAAGATCACA
ATGCATACGATCCCAAAAAGTATAAGGTGGTGCACAAGAACCACTGGCGA
CAGGTCAGCCTGCTGCTGCAGCCTTCCAACAAGAAGTGGTGGGAGGATCC
CGATGTCATTGTTGCTTTCAATTTACCGCGCATTAGCGCCCGCCTGGAGC
GTCTGATGGGCACCAATGTGGTCAAGCTAACGGACCGGAGCTACATGAAG
GAGCTGCGGGAACGAATTGACGAGGATTACCGCAAACAGCTGCTGTCCCG
CATTCGCGCCCGGGAGTTAAAAGAAGTGGAGCGCGAACGAATGCTGATTA
TCGAGGGCAAGTCAGACGTAATACCAGACGAACTAGCCAACGATCCCATA
TTCATGGTTAACAAAGATGCCAACATGGAGATTCAAAAGGAGCGCTCCAA
GCTGAAGACCGCTCGCGAGAAGAACGCGGAGCGTTTGAAGCTGCAGGGCG
TTAAATGGGAGCGGGAAAGGCTTCAACATGCCGCCAAGGAAGCCGAACTG
CTGGCCAAGAAACGCGAGCGGCACCGCCAACAGAAATTACTGGTGGAGCA
GTACAGGACCGAGGATGCGGAGAGGGGAATGGATCTGCTGCGCATCGATA
ACGAAGACTGGCGGGAGTGCGAAAAGAGCCTGAAGGAGTTCCTCG
BO14610.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7196-PA | 1326 | CG7196-RA | 1..679 | 17..695 | 3395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-RA | 1837 | CG46025-RA | 162..840 | 17..695 | 3395 | 100 | Plus |
CG46025-RC | 2036 | CG46025-RC | 162..840 | 17..695 | 3395 | 100 | Plus |
CG46025-RD | 2435 | CG46025-RD | 710..1239 | 166..695 | 2650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7763504..7763696 | 450..642 | 965 | 100 | Plus |
2L | 23513712 | 2L | 7761885..7762039 | 166..320 | 760 | 99.4 | Plus |
2L | 23513712 | 2L | 7763308..7763444 | 315..451 | 685 | 100 | Plus |
2L | 23513712 | 2L | 7754458..7754549 | 74..165 | 460 | 100 | Plus |
2L | 23513712 | 2L | 7754335..7754396 | 17..78 | 310 | 100 | Plus |
2L | 23513712 | 2L | 7764540..7764593 | 642..695 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:08:39 has no hits.
BO14610.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:32:58 Download gff for
BO14610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-PA | 1..679 | 17..695 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:49 Download gff for
BO14610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-PA | 1..679 | 17..695 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:57:27 Download gff for
BO14610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RA | 162..840 | 17..695 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:03:43 Download gff for
BO14610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG46025-RC | 162..840 | 17..695 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:03:43 Download gff for
BO14610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7754335..7754394 | 17..76 | 100 | -> | Plus |
2L | 7754461..7754549 | 77..165 | 100 | -> | Plus |
2L | 7761885..7762035 | 166..316 | 100 | -> | Plus |
2L | 7763310..7763444 | 317..451 | 100 | -> | Plus |
2L | 7763506..7763696 | 452..642 | 100 | -> | Plus |
2L | 7764541..7764593 | 643..695 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:57:27 Download gff for
BO14610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7754335..7754394 | 17..76 | 100 | -> | Plus |
arm_2L | 7754461..7754549 | 77..165 | 100 | -> | Plus |
arm_2L | 7761885..7762035 | 166..316 | 100 | -> | Plus |
arm_2L | 7763310..7763444 | 317..451 | 100 | -> | Plus |
arm_2L | 7763506..7763696 | 452..642 | 100 | -> | Plus |
arm_2L | 7764541..7764593 | 643..695 | 100 | | Plus |
BO14610.complete Sequence
1357 bp (1357 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633194
> BO14610.complete
GAAGTTATCAGTCGACATGGCACGCCTGGTGTTTACGGAGAAAGATCACA
ATGCATACGATCCCAAAAAGTATAAGGTGGTGCACAAGAACCACTGGCGA
CAGGTCAGCCTGCTGCTGCAGCCTTCCAACAAGAAGTGGTGGGAGGATCC
CGATGTCATTGTTGCTTTCAATTTACCGCGCATTAGCGCCCGCCTGGAGC
GTCTGATGGGCACCAATGTGGTCAAGCTAACGGACCGGAGCTACATGAAG
GAGCTGCGGGAACGAATTGACGAGGATTACCGCAAACAGCTGCTGTCCCG
CATTCGCGCCCGGGAGTTAAAAGAAGTGGAGCGCGAACGAATGCTGATTA
TCGAGGGCAAGTCAGACGTAATACCAGACGAACTAGCCAACGATCCCATA
TTCATGGTTAACAAAGATGCCAACATGGAGATTCAAAAGGAGCGCTCCAA
GCTGAAGACCGCTCGCGAGAAGAACGCGGAGCGTTTGAAGCTGCAGGGCG
TTAAATGGGAGCGGGAAAGGCTTCAACATGCCGCCAAGGAAGCCGAACTG
CTGGCCAAGAAACGCGAGCGGCACCGCCAACAGAAATTACTGGTGGAGCA
GTACAGGACCGAGGATGCGGAGAGGGGAATGGATCTGCTGCGCATCGATA
ACGAAGACTGGCGGGAGTGCGAAAAGAGCCTGAAGGAGTTCCTCGAACAG
GAGCGTGCCAAAATGAAGGAGCGTTCGTTGCGCATATCCCAGCCCTACTC
CTCGGATCCCCAGGATATACAGAATATAGTCAGGGCCAGGCAAAAGTTCC
GGGAGACCGAGCTGCGTATTCGCAATCAGCTGGAGGACAAGCTAAAAGAT
GTCAAACTTGCGGTCACCACTCAACAACTAACCGAACTTATCGAGGATGC
CCATCGTTCCAGCGGGGAGATCATCATGCCACAAGAACCTTCGATGGAGG
ACGATGACTTCCAGGGCGGCGCAGTGAACTCCAAATATCTGGACGATGCC
ACCGATGTCTCCGAGGAGACGGTGATCAGCGAGGATGCCATCAGCCTGAC
GCTGGCCAAGCAGCAGTACGCGGAGGAACTGGAGGCCGAAATGGAGGACG
AGTTCAATCGAGGTCTGCTCATCTCCAAGCAGCAGTACGATCAGCTGCGC
TTCGAGGATGAGAAGATCGTGGCGCTCAGAAATGCCAAGGATATTCGCGA
GCTGTATCAACTGGCCGAGGAGATCATCATGGGTGAGAACTATGTCGAGG
CACCGGAGGAGTGCGAGGAGGAGGCGGTGGTGGAGGAGCCGGAACAAGAT
ATCTCCTCCGATCACGAGGCCCAGGAGCCAGCCAAAGCCGCAAGCTTTCT
AGACCAT
BO14610.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-RA | 1326 | CG46025-PA | 1..1323 | 17..1339 | 6540 | 99.6 | Plus |
CG46025-RC | 1326 | CG46025-PC | 1..1323 | 17..1339 | 6540 | 99.6 | Plus |
CG46025-RD | 1791 | CG46025-PD | 615..1788 | 166..1339 | 5795 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-RA | 1837 | CG46025-RA | 162..1484 | 17..1339 | 6540 | 99.6 | Plus |
CG46025-RC | 2036 | CG46025-RC | 162..1484 | 17..1339 | 6540 | 99.6 | Plus |
CG46025-RD | 2435 | CG46025-RD | 710..1883 | 166..1339 | 5795 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:15:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7764753..7765155 | 788..1190 | 1955 | 99 | Plus |
2L | 23513712 | 2L | 7763504..7763696 | 450..642 | 965 | 100 | Plus |
2L | 23513712 | 2L | 7761885..7762039 | 166..320 | 760 | 99.4 | Plus |
2L | 23513712 | 2L | 7764540..7764688 | 642..790 | 745 | 100 | Plus |
2L | 23513712 | 2L | 7765212..7765363 | 1188..1339 | 745 | 99.3 | Plus |
2L | 23513712 | 2L | 7763308..7763444 | 315..451 | 685 | 100 | Plus |
2L | 23513712 | 2L | 7754458..7754549 | 74..165 | 460 | 100 | Plus |
2L | 23513712 | 2L | 7754335..7754396 | 17..78 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:15:33 has no hits.
BO14610.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:52 Download gff for
BO14610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RA | 1..1326 | 17..1343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:15 Download gff for
BO14610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RA | 145..1467 | 17..1341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:45 Download gff for
BO14610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RA | 162..1484 | 17..1341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:52 Download gff for
BO14610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7196-RA | 145..1470 | 17..1343 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:12 Download gff for
BO14610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG46025-RC | 162..1484 | 17..1341 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:12 Download gff for
BO14610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7754335..7754394 | 17..76 | 100 | -> | Plus |
2L | 7754461..7754549 | 77..165 | 100 | -> | Plus |
2L | 7761885..7762035 | 166..316 | 100 | -> | Plus |
2L | 7763310..7763444 | 317..451 | 100 | -> | Plus |
2L | 7763506..7763696 | 452..642 | 100 | -> | Plus |
2L | 7764541..7764687 | 643..789 | 100 | -> | Plus |
2L | 7764755..7765154 | 790..1189 | 99 | -> | Plus |
2L | 7765214..7765363 | 1190..1341 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:45 Download gff for
BO14610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7764541..7764687 | 643..789 | 100 | -> | Plus |
arm_2L | 7754335..7754394 | 17..76 | 100 | -> | Plus |
arm_2L | 7754461..7754549 | 77..165 | 100 | -> | Plus |
arm_2L | 7761885..7762035 | 166..316 | 100 | -> | Plus |
arm_2L | 7763310..7763444 | 317..451 | 100 | -> | Plus |
arm_2L | 7763506..7763696 | 452..642 | 100 | -> | Plus |
arm_2L | 7765214..7765363 | 1190..1341 | 98 | | Plus |
arm_2L | 7764755..7765154 | 790..1189 | 99 | -> | Plus |
BO14610.pep Sequence
Translation from 16 to 1357
> BO14610.pep
MARLVFTEKDHNAYDPKKYKVVHKNHWRQVSLLLQPSNKKWWEDPDVIVA
FNLPRISARLERLMGTNVVKLTDRSYMKELRERIDEDYRKQLLSRIRARE
LKEVERERMLIIEGKSDVIPDELANDPIFMVNKDANMEIQKERSKLKTAR
EKNAERLKLQGVKWERERLQHAAKEAELLAKKRERHRQQKLLVEQYRTED
AERGMDLLRIDNEDWRECEKSLKEFLEQERAKMKERSLRISQPYSSDPQD
IQNIVRARQKFRETELRIRNQLEDKLKDVKLAVTTQQLTELIEDAHRSSG
EIIMPQEPSMEDDDFQGGAVNSKYLDDATDVSEETVISEDAISLTLAKQQ
YAEELEAEMEDEFNRGLLISKQQYDQLRFEDEKIVALRNAKDIRELYQLA
EEIIMGENYVEAPEECEEEAVVEEPEQDISSDHEAQEPAKAASFLDH
BO14610.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG46025-PA | 441 | CG46025-PA | 1..441 | 1..441 | 2233 | 100 | Plus |
CG46025-PC | 441 | CG46025-PC | 1..441 | 1..441 | 2233 | 100 | Plus |
CG46025-PD | 596 | CG46025-PD | 206..596 | 51..441 | 1954 | 100 | Plus |
CG46025-PB | 209 | CG46025-PB | 1..209 | 233..441 | 1041 | 100 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1402..1655 | 57..313 | 158 | 24.8 | Plus |