Clone Sequence Records
BO14612.5prime Sequence
662 bp (662 high quality bases) assembled on 2006-06-16
> BO14612.5prime
GAAGTTATCAGTCGACATGTCGATCTTTGACCATCCCGAACAGCTGAAAA
TGCTGCAGGGCCTTCTGAATCCCAATCAGAGAAGAGGCGGCATTGACTAC
AGCAGTAGCGAGGATGAGGAGGAGTCAATGGTTGTCAATAAGATGAACCC
TGGAACAATTGGACGTCCTAATGGGGAGGATGGAACCGCTAAGGGTAAGA
AGAAAAAGAAGCCCAACCCTTTGTGCACTCCCTTGGTGGAGGAAGAGAAA
AAACAGCCCGAGAGTCTGGAAGAATGGCAAGATCAGCAGGAGAAGGAAGA
CATGGATATACTTGAATCGCGGAAGACTCCCGAGTATACGATGACCTATC
GCCAAGCAGTGGGCACTGAGGATGTTTTCTTGCAGATGGGCAATCGCACT
GGATCCTCGGCCAGCTGTGAGGACCTCATTTTGGAGGTTTCCCTGCCGGA
CGAGGAAATGACTGCTGACAAAATGTCGCTCAGCTTGCAGGAAACTGAAT
TGGATTTGGGTACATGTTTGTACCGCTTACGATTACCGCTTCCCCATCCC
GTCAATGTTGATCGTTGTCATGCAAAATACGATAGTGAGCTGAAGAAACT
ACGTCTCACTCTGCGCCTGCAGCGCGAACTAGACTATGTTAATTTTGCAA
GCTTTCTAGACC
BO14612.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5048-PA | 633 | CG5048-RA | 1..630 | 17..646 | 3075 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:26:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5048-RA | 964 | CG5048-RA | 135..764 | 17..646 | 3105 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:26:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14685380..14685642 | 384..646 | 1285 | 99.2 | Plus |
3L | 28110227 | 3L | 14685084..14685322 | 147..385 | 1180 | 99.6 | Plus |
3L | 28110227 | 3L | 14684902..14685031 | 17..146 | 650 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 20:26:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 1949..2020 | 257..329 | 119 | 64.4 | Plus |
BO14612.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:01 Download gff for
BO14612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-PA | 1..633 | 17..650 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:54 Download gff for
BO14612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-PA | 1..633 | 17..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:33:09 Download gff for
BO14612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-RA | 126..767 | 7..650 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:04 Download gff for
BO14612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-RA | 126..767 | 7..650 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:04 Download gff for
BO14612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14684893..14685031 | 7..146 | 97 | -> | Plus |
3L | 14685084..14685322 | 147..385 | 99 | -> | Plus |
3L | 14685382..14685645 | 386..650 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:33:09 Download gff for
BO14612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14677993..14678131 | 7..146 | 97 | -> | Plus |
arm_3L | 14678184..14678422 | 147..385 | 99 | -> | Plus |
arm_3L | 14678482..14678745 | 386..650 | 98 | | Plus |
BO14612.3prime Sequence
662 bp (662 high quality bases) assembled on 2006-06-02
> BO14612.3prime
ATGGTCTAGAAAGCTTGCAAAATTAACATAGTCTAGTTCGCGCTGCAGGC
GCAGAGTGAGACGTAGTTTCTTCAGCTCACTATCGTATTTTGCATGACAA
CGATCAACATTGACGGGATGGGGAAGCGGTAATCGTAAGCGGTACAAACA
TGTACCCAAATCCAATTCAGTTTCCTGCAAGCTGAGCGACATTTTGTCAG
CAGTCATTTCCTCGTCCGGCAGGGAAACCTCCAAAATGAGGTCCTCACAG
CTGGCCGAGGATCCAGTGCGATTGCCCATCTGCAAGAAAACATCCTCAGT
GCCCACTGCTTGGCGATAGGTCATCGTATACTCGGGAGTCTTCCGCGATT
CAAGTATATCCATGTCTTCCTTCTCCTGCTGATCTTGCCATTCTTCCAGA
CTCTCGGGCTGTTTTTTCTCTTCCTCCACCAAGGGAGTGCACAAAGGGTT
GGGCTTCTTTTTCTTCTTACCCTTAGCGGTTCCATCCTCCCCATTAGGAC
GTCCAATTGTTCCAGGGTTCATCTTATTGACAACCATTGACTCCTCCTCA
TCCTCGCTACTGCTGTAGTCAATGCCGCCTCTTCTCTGATTGGGATTCAG
AAGGCCCTGCAGCATTTTCAGCTGTTCGGGATGGTCAAAGATCGACATGT
CGACTGATAACT
BO14612.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5048-PA | 633 | CG5048-RA | 1..630 | 648..19 | 3075 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5048-RA | 964 | CG5048-RA | 135..764 | 648..19 | 3105 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14685380..14685642 | 281..19 | 1285 | 99.2 | Minus |
3L | 28110227 | 3L | 14685084..14685322 | 518..280 | 1180 | 99.6 | Minus |
3L | 28110227 | 3L | 14684902..14685031 | 648..519 | 650 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:27:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 1949..2020 | 408..336 | 119 | 64.4 | Minus |
BO14612.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:00 Download gff for
BO14612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-PA | 1..633 | 15..648 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:53 Download gff for
BO14612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-PA | 1..633 | 15..648 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:11:45 Download gff for
BO14612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-RA | 126..767 | 15..658 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:15 Download gff for
BO14612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-RA | 126..767 | 15..658 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:15 Download gff for
BO14612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14684893..14685031 | 519..658 | 97 | -> | Minus |
3L | 14685084..14685322 | 280..518 | 99 | -> | Minus |
3L | 14685382..14685645 | 15..279 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:11:45 Download gff for
BO14612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14677993..14678131 | 519..658 | 97 | -> | Minus |
arm_3L | 14678184..14678422 | 280..518 | 99 | -> | Minus |
arm_3L | 14678482..14678745 | 15..279 | 98 | | Minus |
BO14612.complete Sequence
664 bp (664 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633195
> BO14612.complete
GAAGTTATCAGTCGACATGTCGATCTTTGACCATCCCGAACAGCTGAAAA
TGCTGCAGGGCCTTCTGAATCCCAATCAGAGAAGAGGCGGCATTGACTAC
AGCAGTAGCGAGGATGAGGAGGAGTCAATGGTTGTCAATAAGATGAACCC
TGGAACAATTGGACGTCCTAATGGGGAGGATGGAACCGCTAAGGGTAAGA
AGAAAAAGAAGCCCAACCCTTTGTGCACTCCCTTGGTGGAGGAAGAGAAA
AAACAGCCCGAGAGTCTGGAAGAATGGCAAGATCAGCAGGAGAAGGAAGA
CATGGATATACTTGAATCGCGGAAGACTCCCGAGTATACGATGACCTATC
GCCAAGCAGTGGGCACTGAGGATGTTTTCTTGCAGATGGGCAATCGCACT
GGATCCTCGGCCAGCTGTGAGGACCTCATTTTGGAGGTTTCCCTGCCGGA
CGAGGAAATGACTGCTGACAAAATGTCGCTCAGCTTGCAGGAAACTGAAT
TGGATTTGGGTACATGTTTGTACCGCTTACGATTACCGCTTCCCCATCCC
GTCAATGTTGATCGTTGTCATGCAAAATACGATAGTGAGCTGAAGAAACT
ACGTCTCACTCTGCGCCTGCAGCGCGAACTAGACTATGTTAATTTTGCAA
GCTTTCTAGACCAT
BO14612.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:41:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5048-RA | 633 | CG5048-PA | 1..630 | 17..646 | 3105 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5048-RA | 964 | CG5048-RA | 135..764 | 17..646 | 3105 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14685380..14685642 | 384..646 | 1285 | 99.2 | Plus |
3L | 28110227 | 3L | 14685084..14685322 | 147..385 | 1180 | 99.6 | Plus |
3L | 28110227 | 3L | 14684902..14685031 | 17..146 | 650 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 1949..2020 | 257..329 | 119 | 64.4 | Plus |
BO14612.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:53 Download gff for
BO14612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-RA | 1..633 | 17..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:31 Download gff for
BO14612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-RA | 169..810 | 7..650 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:34 Download gff for
BO14612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-RA | 135..764 | 17..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:53 Download gff for
BO14612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-RA | 169..810 | 7..650 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:17 Download gff for
BO14612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5048-RA | 135..764 | 17..648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:17 Download gff for
BO14612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14685084..14685322 | 147..385 | 99 | -> | Plus |
3L | 14685382..14685642 | 386..648 | 98 | | Plus |
3L | 14684902..14685031 | 17..146 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:34 Download gff for
BO14612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14678002..14678131 | 17..146 | 100 | -> | Plus |
arm_3L | 14678184..14678422 | 147..385 | 99 | -> | Plus |
arm_3L | 14678482..14678742 | 386..648 | 98 | | Plus |
BO14612.pep Sequence
Translation from 16 to 664
> BO14612.pep
MSIFDHPEQLKMLQGLLNPNQRRGGIDYSSSEDEEESMVVNKMNPGTIGR
PNGEDGTAKGKKKKKPNPLCTPLVEEEKKQPESLEEWQDQQEKEDMDILE
SRKTPEYTMTYRQAVGTEDVFLQMGNRTGSSASCEDLILEVSLPDEEMTA
DKMSLSLQETELDLGTCLYRLRLPLPHPVNVDRCHAKYDSELKKLRLTLR
LQRELDYVNFASFLDH
BO14612.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5048-PA | 210 | CG5048-PA | 1..210 | 1..210 | 1099 | 100 | Plus |