Clone BO14612 Report

Search the DGRC for BO14612

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:146
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG5048-RA
Protein status:BO14612.pep: validated full length
Sequenced Size:664

Clone Sequence Records

BO14612.5prime Sequence

662 bp (662 high quality bases) assembled on 2006-06-16

> BO14612.5prime
GAAGTTATCAGTCGACATGTCGATCTTTGACCATCCCGAACAGCTGAAAA
TGCTGCAGGGCCTTCTGAATCCCAATCAGAGAAGAGGCGGCATTGACTAC
AGCAGTAGCGAGGATGAGGAGGAGTCAATGGTTGTCAATAAGATGAACCC
TGGAACAATTGGACGTCCTAATGGGGAGGATGGAACCGCTAAGGGTAAGA
AGAAAAAGAAGCCCAACCCTTTGTGCACTCCCTTGGTGGAGGAAGAGAAA
AAACAGCCCGAGAGTCTGGAAGAATGGCAAGATCAGCAGGAGAAGGAAGA
CATGGATATACTTGAATCGCGGAAGACTCCCGAGTATACGATGACCTATC
GCCAAGCAGTGGGCACTGAGGATGTTTTCTTGCAGATGGGCAATCGCACT
GGATCCTCGGCCAGCTGTGAGGACCTCATTTTGGAGGTTTCCCTGCCGGA
CGAGGAAATGACTGCTGACAAAATGTCGCTCAGCTTGCAGGAAACTGAAT
TGGATTTGGGTACATGTTTGTACCGCTTACGATTACCGCTTCCCCATCCC
GTCAATGTTGATCGTTGTCATGCAAAATACGATAGTGAGCTGAAGAAACT
ACGTCTCACTCTGCGCCTGCAGCGCGAACTAGACTATGTTAATTTTGCAA
GCTTTCTAGACC

BO14612.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5048-PA 633 CG5048-RA 1..630 17..646 3075 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:26:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5048-RA 964 CG5048-RA 135..764 17..646 3105 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14685380..14685642 384..646 1285 99.2 Plus
3L 28110227 3L 14685084..14685322 147..385 1180 99.6 Plus
3L 28110227 3L 14684902..14685031 17..146 650 100 Plus
Blast to na_te.dros performed 2015-02-10 20:26:22
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 1949..2020 257..329 119 64.4 Plus

BO14612.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:01 Download gff for BO14612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5048-PA 1..633 17..650 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:54 Download gff for BO14612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5048-PA 1..633 17..650 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:33:09 Download gff for BO14612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 126..767 7..650 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:04 Download gff for BO14612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 126..767 7..650 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:04 Download gff for BO14612.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14684893..14685031 7..146 97 -> Plus
3L 14685084..14685322 147..385 99 -> Plus
3L 14685382..14685645 386..650 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:33:09 Download gff for BO14612.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14677993..14678131 7..146 97 -> Plus
arm_3L 14678184..14678422 147..385 99 -> Plus
arm_3L 14678482..14678745 386..650 98   Plus

BO14612.3prime Sequence

662 bp (662 high quality bases) assembled on 2006-06-02

> BO14612.3prime
ATGGTCTAGAAAGCTTGCAAAATTAACATAGTCTAGTTCGCGCTGCAGGC
GCAGAGTGAGACGTAGTTTCTTCAGCTCACTATCGTATTTTGCATGACAA
CGATCAACATTGACGGGATGGGGAAGCGGTAATCGTAAGCGGTACAAACA
TGTACCCAAATCCAATTCAGTTTCCTGCAAGCTGAGCGACATTTTGTCAG
CAGTCATTTCCTCGTCCGGCAGGGAAACCTCCAAAATGAGGTCCTCACAG
CTGGCCGAGGATCCAGTGCGATTGCCCATCTGCAAGAAAACATCCTCAGT
GCCCACTGCTTGGCGATAGGTCATCGTATACTCGGGAGTCTTCCGCGATT
CAAGTATATCCATGTCTTCCTTCTCCTGCTGATCTTGCCATTCTTCCAGA
CTCTCGGGCTGTTTTTTCTCTTCCTCCACCAAGGGAGTGCACAAAGGGTT
GGGCTTCTTTTTCTTCTTACCCTTAGCGGTTCCATCCTCCCCATTAGGAC
GTCCAATTGTTCCAGGGTTCATCTTATTGACAACCATTGACTCCTCCTCA
TCCTCGCTACTGCTGTAGTCAATGCCGCCTCTTCTCTGATTGGGATTCAG
AAGGCCCTGCAGCATTTTCAGCTGTTCGGGATGGTCAAAGATCGACATGT
CGACTGATAACT

BO14612.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5048-PA 633 CG5048-RA 1..630 648..19 3075 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5048-RA 964 CG5048-RA 135..764 648..19 3105 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14685380..14685642 281..19 1285 99.2 Minus
3L 28110227 3L 14685084..14685322 518..280 1180 99.6 Minus
3L 28110227 3L 14684902..14685031 648..519 650 100 Minus
Blast to na_te.dros performed 2015-02-10 22:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 1949..2020 408..336 119 64.4 Minus

BO14612.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:00 Download gff for BO14612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5048-PA 1..633 15..648 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:53 Download gff for BO14612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5048-PA 1..633 15..648 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:11:45 Download gff for BO14612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 126..767 15..658 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:15 Download gff for BO14612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 126..767 15..658 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:15 Download gff for BO14612.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14684893..14685031 519..658 97 -> Minus
3L 14685084..14685322 280..518 99 -> Minus
3L 14685382..14685645 15..279 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:11:45 Download gff for BO14612.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14677993..14678131 519..658 97 -> Minus
arm_3L 14678184..14678422 280..518 99 -> Minus
arm_3L 14678482..14678745 15..279 98   Minus

BO14612.complete Sequence

664 bp (664 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633195

> BO14612.complete
GAAGTTATCAGTCGACATGTCGATCTTTGACCATCCCGAACAGCTGAAAA
TGCTGCAGGGCCTTCTGAATCCCAATCAGAGAAGAGGCGGCATTGACTAC
AGCAGTAGCGAGGATGAGGAGGAGTCAATGGTTGTCAATAAGATGAACCC
TGGAACAATTGGACGTCCTAATGGGGAGGATGGAACCGCTAAGGGTAAGA
AGAAAAAGAAGCCCAACCCTTTGTGCACTCCCTTGGTGGAGGAAGAGAAA
AAACAGCCCGAGAGTCTGGAAGAATGGCAAGATCAGCAGGAGAAGGAAGA
CATGGATATACTTGAATCGCGGAAGACTCCCGAGTATACGATGACCTATC
GCCAAGCAGTGGGCACTGAGGATGTTTTCTTGCAGATGGGCAATCGCACT
GGATCCTCGGCCAGCTGTGAGGACCTCATTTTGGAGGTTTCCCTGCCGGA
CGAGGAAATGACTGCTGACAAAATGTCGCTCAGCTTGCAGGAAACTGAAT
TGGATTTGGGTACATGTTTGTACCGCTTACGATTACCGCTTCCCCATCCC
GTCAATGTTGATCGTTGTCATGCAAAATACGATAGTGAGCTGAAGAAACT
ACGTCTCACTCTGCGCCTGCAGCGCGAACTAGACTATGTTAATTTTGCAA
GCTTTCTAGACCAT

BO14612.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5048-RA 633 CG5048-PA 1..630 17..646 3105 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5048-RA 964 CG5048-RA 135..764 17..646 3105 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14685380..14685642 384..646 1285 99.2 Plus
3L 28110227 3L 14685084..14685322 147..385 1180 99.6 Plus
3L 28110227 3L 14684902..14685031 17..146 650 100 Plus
Blast to na_te.dros performed 2014-11-28 00:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 1949..2020 257..329 119 64.4 Plus

BO14612.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:53 Download gff for BO14612.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 1..633 17..650 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:31 Download gff for BO14612.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 169..810 7..650 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:34 Download gff for BO14612.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 135..764 17..648 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:53 Download gff for BO14612.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 169..810 7..650 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:17 Download gff for BO14612.complete
Subject Subject Range Query Range Percent Splice Strand
CG5048-RA 135..764 17..648 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:17 Download gff for BO14612.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14685084..14685322 147..385 99 -> Plus
3L 14685382..14685642 386..648 98   Plus
3L 14684902..14685031 17..146 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:34 Download gff for BO14612.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14678002..14678131 17..146 100 -> Plus
arm_3L 14678184..14678422 147..385 99 -> Plus
arm_3L 14678482..14678742 386..648 98   Plus

BO14612.pep Sequence

Translation from 16 to 664

> BO14612.pep
MSIFDHPEQLKMLQGLLNPNQRRGGIDYSSSEDEEESMVVNKMNPGTIGR
PNGEDGTAKGKKKKKPNPLCTPLVEEEKKQPESLEEWQDQQEKEDMDILE
SRKTPEYTMTYRQAVGTEDVFLQMGNRTGSSASCEDLILEVSLPDEEMTA
DKMSLSLQETELDLGTCLYRLRLPLPHPVNVDRCHAKYDSELKKLRLTLR
LQRELDYVNFASFLDH

BO14612.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5048-PA 210 CG5048-PA 1..210 1..210 1099 100 Plus