Clone Sequence Records
BO14616.5prime Sequence
834 bp (735 high quality bases) assembled on 2006-06-16
> BO14616.5prime
GAAGTTATCAGTCGACATGCCGGAATTTGAGAACTTTAACGTAAAAACCA
CAATTGACTGCAAACAAGGTGCAGTGCGAGCTGTGCGCTATAATGTTGAT
GGCACTTATTGCTTGAGTTGTGGATCTGACAAGAAGATAAAGCTGTGGAA
TCCGGCATCGGGATTACTGCTTAAGACTTATGGTGGTCATGCGGATGAAG
TCACCGATGCGGCGGGAAGCTGTGATAGTAGCTATATCGTTTCCGCCAGC
TTGGATAAAAGCATTATCTACTGGGACGTGTCAACGGGAGCACCAGTACG
GCGCCTGCGTAGCCATGCCGGAGGTGTTAGATGCGTCTGCTTCAACGAGG
ACTCCTCGATAGCCATTTCCGGGGGTCGAGATAATGCCGTAATGTGCTGG
GACATTCGAACGCGTCGCCTGGATCCCGTTCAGGTGATGAAGGAGGCCCG
GGACTGCATCACCACGGTGGCAACCAACGAGAATCGCATCTACGCCGCCT
CCTTGGACGGATGTGTGAGGACCTACGATATTCGGGTGGGCGAACTTACC
TGCGACAAAATTGGTGAACCCATCACATATCTGGCGCAGACGCGCGACGA
GCAATGTCTGGTGGCCGGCTGTCAGGATAGTGTGGTTCGTCTGCTGGACT
GTGAGACCGGCGGATTACTCTCCGAGTACAGGGGACATCGCGGCGATGAC
TACCACATCGAGTGCGGAATACTGTCAAACGATGCCCAAATAGTCACGGG
CTCCAGTGATGGAGACGCCTTTGTTTACGACCTGCTCGATGGGAAAGTAC
TGCAGCGCATTCGCATAAGTGATAATGGCGGCGT
BO14616.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4935-PA | 927 | CG4935-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4935-RA | 1083 | CG4935-RA | 60..877 | 17..834 | 4090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:06:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16262649..16263182 | 287..820 | 2670 | 100 | Plus |
2L | 23513712 | 2L | 16262338..16262458 | 95..215 | 605 | 100 | Plus |
2L | 23513712 | 2L | 16262200..16262282 | 17..99 | 400 | 98.8 | Plus |
2L | 23513712 | 2L | 16262520..16262594 | 214..288 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:06:32 has no hits.
BO14616.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:05 Download gff for
BO14616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-PA | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:00 Download gff for
BO14616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-PA | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:15 Download gff for
BO14616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-RA | 60..877 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:42 Download gff for
BO14616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-RA | 60..877 | 17..834 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:42 Download gff for
BO14616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16262200..16262278 | 17..95 | 100 | -> | Plus |
2L | 16262339..16262457 | 96..214 | 100 | -> | Plus |
2L | 16262521..16262593 | 215..287 | 100 | -> | Plus |
2L | 16262650..16263180 | 288..818 | 100 | -> | Plus |
2L | 16263262..16263277 | 819..834 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:15 Download gff for
BO14616.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16262200..16262278 | 17..95 | 100 | -> | Plus |
arm_2L | 16262339..16262457 | 96..214 | 100 | -> | Plus |
arm_2L | 16262521..16262593 | 215..287 | 100 | -> | Plus |
arm_2L | 16262650..16263180 | 288..818 | 100 | -> | Plus |
arm_2L | 16263262..16263277 | 819..834 | 100 | | Plus |
BO14616.complete Sequence
958 bp (958 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633198
> BO14616.complete
GAAGTTATCAGTCGACATGCCGGAATTTGAGAACTTTAACGTAAAAACCA
CAATTGACTGCAAACAAGGTGCAGTGCGAGCTGTGCGCTATAATGTTGAT
GGCACTTATTGCTTGAGTTGTGGATCTGACAAGAAGATAAAGCTGTGGAA
TCCGGCATCGGGATTACTGCTTAAGACTTATGGTGGTCATGCGGATGAAG
TCACCGATGCGGCGGGAAGCTGTGATAGTAGCTATATCGTTTCCGCCAGC
TTGGATAAAAGCATTATCTACTGGGACGTGTCAACGGGAGCACCAGTACG
GCGCCTGCGTAGCCATGCCGGAGGTGTTAGATGCGTCTGCTTCAACGAGG
ACTCCTCGATAGCCATTTCCGGGGGTCGAGATAATGCCGTAATGTGCTGG
GACATTCGAACGCGTCGCCTGGATCCCGTTCAGGTGATGAAGGAGGCCCG
GGACTGCATCACCACGGTGGCAACCAACGAGAATCGCATCTACGCCGCCT
CCTTGGACGGATGTGTGAGGACCTACGATATTCGGGTGGGCGAACTTACC
TGCGACAAAATTGGTGAACCCATCACATATCTGGCGCAGACGCGCGACGA
GCAATGTCTGGTGGCCGGCTGTCAGGATAGTGTGGTTCGTCTGCTGGACT
GTGAGACCGGCGGATTACTCTCCGAGTACAGGGGACATCGCGGCGATGAC
TACCACATCGAGTGCGGAATACTGTCAAACGATGCCCAAATAGTCACGGG
CTCCAGTGATGGAGACGCCTTTGTTTACGACCTGCTCGATGGGAAAGTAC
TGCAGCGCATTCGCATAAGTGATAATGGCGGCGTCGTCCACTCCTTAGCC
ACTCATCCCAAGCGACAGGAAATGCTTTTCGCCAGACGACGGGACATGTA
TGTCTTCTCGACAGATTTGCAAATCGAAGAGGAGCAATTAGCAAGCTTTC
TAGACCAT
BO14616.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:58:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4935-RA | 927 | CG4935-PA | 1..924 | 17..940 | 4620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4935-RA | 1083 | CG4935-RA | 60..983 | 17..940 | 4620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16262649..16263182 | 287..820 | 2670 | 100 | Plus |
2L | 23513712 | 2L | 16263262..16263383 | 819..940 | 610 | 100 | Plus |
2L | 23513712 | 2L | 16262338..16262458 | 95..215 | 605 | 100 | Plus |
2L | 23513712 | 2L | 16262200..16262282 | 17..99 | 400 | 98.8 | Plus |
2L | 23513712 | 2L | 16262520..16262594 | 214..288 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:58:19 has no hits.
BO14616.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:56 Download gff for
BO14616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-RA | 1..927 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:36 Download gff for
BO14616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-RA | 78..1001 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:30 Download gff for
BO14616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-RA | 60..983 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:56 Download gff for
BO14616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-RA | 78..1001 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:58 Download gff for
BO14616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-RA | 60..983 | 17..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:58 Download gff for
BO14616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16262200..16262278 | 17..95 | 100 | -> | Plus |
2L | 16262339..16262457 | 96..214 | 100 | -> | Plus |
2L | 16262521..16262593 | 215..287 | 100 | -> | Plus |
2L | 16262650..16263180 | 288..818 | 100 | -> | Plus |
2L | 16263262..16263383 | 819..942 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:30 Download gff for
BO14616.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16262200..16262278 | 17..95 | 100 | -> | Plus |
arm_2L | 16262339..16262457 | 96..214 | 100 | -> | Plus |
arm_2L | 16262521..16262593 | 215..287 | 100 | -> | Plus |
arm_2L | 16262650..16263180 | 288..818 | 100 | -> | Plus |
arm_2L | 16263262..16263383 | 819..942 | 98 | | Plus |
BO14616.pep Sequence
Translation from 16 to 958
> BO14616.pep
MPEFENFNVKTTIDCKQGAVRAVRYNVDGTYCLSCGSDKKIKLWNPASGL
LLKTYGGHADEVTDAAGSCDSSYIVSASLDKSIIYWDVSTGAPVRRLRSH
AGGVRCVCFNEDSSIAISGGRDNAVMCWDIRTRRLDPVQVMKEARDCITT
VATNENRIYAASLDGCVRTYDIRVGELTCDKIGEPITYLAQTRDEQCLVA
GCQDSVVRLLDCETGGLLSEYRGHRGDDYHIECGILSNDAQIVTGSSDGD
AFVYDLLDGKVLQRIRISDNGGVVHSLATHPKRQEMLFARRRDMYVFSTD
LQIEEEQLASFLDH
BO14616.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4935-PA | 308 | CG4935-PA | 1..308 | 1..308 | 1627 | 100 | Plus |
wds-PB | 361 | CG17437-PB | 61..338 | 6..281 | 338 | 29.4 | Plus |
wds-PA | 361 | CG17437-PA | 61..338 | 6..281 | 338 | 29.4 | Plus |
CG10931-PA | 345 | CG10931-PA | 46..321 | 7..281 | 237 | 24.9 | Plus |
ago-PA | 1326 | CG15010-PA | 1043..1281 | 27..272 | 235 | 26.2 | Plus |