Clone BO14616 Report

Search the DGRC for BO14616

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:146
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG4935-RA
Protein status:BO14616.pep: validated full length
Sequenced Size:958

Clone Sequence Records

BO14616.5prime Sequence

834 bp (735 high quality bases) assembled on 2006-06-16

> BO14616.5prime
GAAGTTATCAGTCGACATGCCGGAATTTGAGAACTTTAACGTAAAAACCA
CAATTGACTGCAAACAAGGTGCAGTGCGAGCTGTGCGCTATAATGTTGAT
GGCACTTATTGCTTGAGTTGTGGATCTGACAAGAAGATAAAGCTGTGGAA
TCCGGCATCGGGATTACTGCTTAAGACTTATGGTGGTCATGCGGATGAAG
TCACCGATGCGGCGGGAAGCTGTGATAGTAGCTATATCGTTTCCGCCAGC
TTGGATAAAAGCATTATCTACTGGGACGTGTCAACGGGAGCACCAGTACG
GCGCCTGCGTAGCCATGCCGGAGGTGTTAGATGCGTCTGCTTCAACGAGG
ACTCCTCGATAGCCATTTCCGGGGGTCGAGATAATGCCGTAATGTGCTGG
GACATTCGAACGCGTCGCCTGGATCCCGTTCAGGTGATGAAGGAGGCCCG
GGACTGCATCACCACGGTGGCAACCAACGAGAATCGCATCTACGCCGCCT
CCTTGGACGGATGTGTGAGGACCTACGATATTCGGGTGGGCGAACTTACC
TGCGACAAAATTGGTGAACCCATCACATATCTGGCGCAGACGCGCGACGA
GCAATGTCTGGTGGCCGGCTGTCAGGATAGTGTGGTTCGTCTGCTGGACT
GTGAGACCGGCGGATTACTCTCCGAGTACAGGGGACATCGCGGCGATGAC
TACCACATCGAGTGCGGAATACTGTCAAACGATGCCCAAATAGTCACGGG
CTCCAGTGATGGAGACGCCTTTGTTTACGACCTGCTCGATGGGAAAGTAC
TGCAGCGCATTCGCATAAGTGATAATGGCGGCGT

BO14616.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4935-PA 927 CG4935-RA 1..818 17..834 4090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4935-RA 1083 CG4935-RA 60..877 17..834 4090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16262649..16263182 287..820 2670 100 Plus
2L 23513712 2L 16262338..16262458 95..215 605 100 Plus
2L 23513712 2L 16262200..16262282 17..99 400 98.8 Plus
2L 23513712 2L 16262520..16262594 214..288 375 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:06:32 has no hits.

BO14616.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:05 Download gff for BO14616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4935-PA 1..818 17..834 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:00 Download gff for BO14616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4935-PA 1..818 17..834 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:15 Download gff for BO14616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4935-RA 60..877 17..834 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:42 Download gff for BO14616.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4935-RA 60..877 17..834 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:42 Download gff for BO14616.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16262200..16262278 17..95 100 -> Plus
2L 16262339..16262457 96..214 100 -> Plus
2L 16262521..16262593 215..287 100 -> Plus
2L 16262650..16263180 288..818 100 -> Plus
2L 16263262..16263277 819..834 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:15 Download gff for BO14616.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16262200..16262278 17..95 100 -> Plus
arm_2L 16262339..16262457 96..214 100 -> Plus
arm_2L 16262521..16262593 215..287 100 -> Plus
arm_2L 16262650..16263180 288..818 100 -> Plus
arm_2L 16263262..16263277 819..834 100   Plus

BO14616.complete Sequence

958 bp (958 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633198

> BO14616.complete
GAAGTTATCAGTCGACATGCCGGAATTTGAGAACTTTAACGTAAAAACCA
CAATTGACTGCAAACAAGGTGCAGTGCGAGCTGTGCGCTATAATGTTGAT
GGCACTTATTGCTTGAGTTGTGGATCTGACAAGAAGATAAAGCTGTGGAA
TCCGGCATCGGGATTACTGCTTAAGACTTATGGTGGTCATGCGGATGAAG
TCACCGATGCGGCGGGAAGCTGTGATAGTAGCTATATCGTTTCCGCCAGC
TTGGATAAAAGCATTATCTACTGGGACGTGTCAACGGGAGCACCAGTACG
GCGCCTGCGTAGCCATGCCGGAGGTGTTAGATGCGTCTGCTTCAACGAGG
ACTCCTCGATAGCCATTTCCGGGGGTCGAGATAATGCCGTAATGTGCTGG
GACATTCGAACGCGTCGCCTGGATCCCGTTCAGGTGATGAAGGAGGCCCG
GGACTGCATCACCACGGTGGCAACCAACGAGAATCGCATCTACGCCGCCT
CCTTGGACGGATGTGTGAGGACCTACGATATTCGGGTGGGCGAACTTACC
TGCGACAAAATTGGTGAACCCATCACATATCTGGCGCAGACGCGCGACGA
GCAATGTCTGGTGGCCGGCTGTCAGGATAGTGTGGTTCGTCTGCTGGACT
GTGAGACCGGCGGATTACTCTCCGAGTACAGGGGACATCGCGGCGATGAC
TACCACATCGAGTGCGGAATACTGTCAAACGATGCCCAAATAGTCACGGG
CTCCAGTGATGGAGACGCCTTTGTTTACGACCTGCTCGATGGGAAAGTAC
TGCAGCGCATTCGCATAAGTGATAATGGCGGCGTCGTCCACTCCTTAGCC
ACTCATCCCAAGCGACAGGAAATGCTTTTCGCCAGACGACGGGACATGTA
TGTCTTCTCGACAGATTTGCAAATCGAAGAGGAGCAATTAGCAAGCTTTC
TAGACCAT

BO14616.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4935-RA 927 CG4935-PA 1..924 17..940 4620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4935-RA 1083 CG4935-RA 60..983 17..940 4620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16262649..16263182 287..820 2670 100 Plus
2L 23513712 2L 16263262..16263383 819..940 610 100 Plus
2L 23513712 2L 16262338..16262458 95..215 605 100 Plus
2L 23513712 2L 16262200..16262282 17..99 400 98.8 Plus
2L 23513712 2L 16262520..16262594 214..288 375 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:58:19 has no hits.

BO14616.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:56 Download gff for BO14616.complete
Subject Subject Range Query Range Percent Splice Strand
CG4935-RA 1..927 17..941 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:36 Download gff for BO14616.complete
Subject Subject Range Query Range Percent Splice Strand
CG4935-RA 78..1001 17..940 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:30 Download gff for BO14616.complete
Subject Subject Range Query Range Percent Splice Strand
CG4935-RA 60..983 17..942 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:56 Download gff for BO14616.complete
Subject Subject Range Query Range Percent Splice Strand
CG4935-RA 78..1001 17..940 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:58 Download gff for BO14616.complete
Subject Subject Range Query Range Percent Splice Strand
CG4935-RA 60..983 17..942 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:58 Download gff for BO14616.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16262200..16262278 17..95 100 -> Plus
2L 16262339..16262457 96..214 100 -> Plus
2L 16262521..16262593 215..287 100 -> Plus
2L 16262650..16263180 288..818 100 -> Plus
2L 16263262..16263383 819..942 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:30 Download gff for BO14616.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16262200..16262278 17..95 100 -> Plus
arm_2L 16262339..16262457 96..214 100 -> Plus
arm_2L 16262521..16262593 215..287 100 -> Plus
arm_2L 16262650..16263180 288..818 100 -> Plus
arm_2L 16263262..16263383 819..942 98   Plus

BO14616.pep Sequence

Translation from 16 to 958

> BO14616.pep
MPEFENFNVKTTIDCKQGAVRAVRYNVDGTYCLSCGSDKKIKLWNPASGL
LLKTYGGHADEVTDAAGSCDSSYIVSASLDKSIIYWDVSTGAPVRRLRSH
AGGVRCVCFNEDSSIAISGGRDNAVMCWDIRTRRLDPVQVMKEARDCITT
VATNENRIYAASLDGCVRTYDIRVGELTCDKIGEPITYLAQTRDEQCLVA
GCQDSVVRLLDCETGGLLSEYRGHRGDDYHIECGILSNDAQIVTGSSDGD
AFVYDLLDGKVLQRIRISDNGGVVHSLATHPKRQEMLFARRRDMYVFSTD
LQIEEEQLASFLDH

BO14616.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4935-PA 308 CG4935-PA 1..308 1..308 1627 100 Plus
wds-PB 361 CG17437-PB 61..338 6..281 338 29.4 Plus
wds-PA 361 CG17437-PA 61..338 6..281 338 29.4 Plus
CG10931-PA 345 CG10931-PA 46..321 7..281 237 24.9 Plus
ago-PA 1326 CG15010-PA 1043..1281 27..272 235 26.2 Plus