Clone BO14617 Report

Search the DGRC for BO14617

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:146
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG5180-RA
Protein status:BO14617.pep: Imported from assembly
Sequenced Size:1268

Clone Sequence Records

BO14617.complete Sequence

1268 bp assembled on 2010-04-09

GenBank Submission: KX795177

> BO14617.complete
GAAGTTATCAGTCGGACATGCAATACAAAGGGCTCGATACCATCTCGACC
GCGATGATTTGTTTGGGTTGGCAACGCCCCGACGTTTGTGGCGCAGCCAA
CTTCACGCGAGACGCAGCGAAAACAAAAAATACTAAGCTGAAGTTAATTG
AGAAAACCCCAAATAAAACGCGAGTGAAAGGGACCATGAACTTAGACCTG
CGTTCGTACTCACGCCACTGGCTCACGGAGTTTATCGAGCAGTACCAAGA
GGAGGAGTGCCTCTGGCAGCCCAAGCACAACGACTACAGCAATCACACAG
CCCGTAACAAGTCCTACGATCGCCTGGTGGAGAAGCTAAAAGAAGTGGAG
CCCAATCCGGACAGGGCGATGGTAGTAAGGAAAATTAACTCACTGCGGTC
CGCTTTTCGGCGGGAATTCCGCAAGACGAGTACCAAAGGCGACTACGCAA
CGCGTTTGTGGTACTACGACAAGCTGCTTTTCATCGCTGACCACAAGCCC
AAGCGCCACGAACTCGGCTCCAAGCCCAAGAGAGAACTCCATATCAGCTT
CGACGACGAGGAGTCAATGGAGTTCGAGGACGACTCACATCACACGGGCA
CTCAGTCTCAGCACATGGAGTCCATAATACCCACGTCCCCGGACGATGTG
GAAGAAGTCGCGGCGACGGCCAACAATGTGGTCGTCAGCAGTCAGGGCGC
CACTCTGAGCACCATTTCGGTGACGCCCGCGGAATGTGTGACCCTTGTCA
AGAGCGAGGAGCACCAGGCGGCCGAAGCAGCGGCAGCCGCAGCCCAAGCA
CACCAGCAAATGGTAGCCCATGCAGCAGCCCAGACCTCCATTGCGGCGGC
GGCGGCTCAGGGACATGCCGTGAAGGTCTTAGAGATCACCTCCCTAGACT
CCAACTCCCAGCGCGAGATACAACAAGCGGTCAATCATCTGGAGCACCAC
CAGCAGCAGCTCCACCTGCAGCAGACGAATGGCCAACATCAGGGCGTTCC
CACCATCCAGATAGGCCGCGATCACTATCAGCCATTGTTTGGCAATGCCG
GCACCACTGCCTATACCACCACAGCGGCTACGAGCACATCGCACCGGCAA
GACGACGAGTACGATGCCATTGGCGTGAATGTGGCGAGCAAACTGCGCTC
CATCAACCCGACGCAGCGGATCGTGGCCGAGAAACTGATCAGCGACGTTC
TATTCAACGCACAGCTGGGCAACCTCACCGTTCACTCGGCCCTCACGCAG
GCAAGCTTTCTAGACCAT

BO14617.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5180-RC 1068 CG5180-PC 1..1065 186..1250 5325 100 Plus
CG5180-RB 1068 CG5180-PB 1..1065 186..1250 5325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5180-RC 1517 CG5180-RC 109..1341 18..1250 6165 100 Plus
CG5180-RB 1341 CG5180-RB 1..1165 86..1250 5825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20558648..20559197 378..927 2750 100 Plus
3R 32079331 3R 20558243..20558592 31..380 1750 100 Plus
3R 32079331 3R 20559261..20559584 927..1250 1620 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:43:38 has no hits.

BO14617.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:29:16 Download gff for BO14617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5180-RB 108..1341 17..1252 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:59 Download gff for BO14617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5180-RC 108..1341 17..1252 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:23:43 Download gff for BO14617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5180-RC 108..1341 17..1252 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:23:43 Download gff for BO14617.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20558244..20558591 32..379 100 -> Plus
3R 20558650..20559196 380..926 100 -> Plus
3R 20559261..20559584 927..1252 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:59 Download gff for BO14617.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16383966..16384313 32..379 100 -> Plus
arm_3R 16384372..16384918 380..926 100 -> Plus
arm_3R 16384983..16385306 927..1252 99   Plus

BO14617.5prime Sequence

1053 bp (843 high quality bases) assembled on 2010-02-21

> BO14617.5prime
GACATGCAATACAAAGGGCTCGATACCATCTCGACCGCGATGATTTGTTT
GGGTTGGCAACGCCCCGACGTTTGTGGCGCAGCCAACTTCACGCGAGACG
CAGCGAAAACAAAAAATACTAAGCTGAAGTTAATTGAGAAAACCCCAAAT
AAAACGCGAGTGAAAGGGACCATGAACTTAGACCTGCGTTCGTACTCACG
CCACTGGCTCACGGAGTTTATCGAGCAGTACCAAGAGGAGGAGTGCCTCT
GGCAGCCCAAGCACAACGACTACAGCAATCACACAGCCCGTAACAAGTCC
TACGATCGCCTGGTGGAGAAGCTAAAAGAAGTGGAGCCCAATCCGGACAG
GGCGATGGTAGTAAGGAAAATTAACTCACTGCGGTCCGCTTTTCGGCGGG
AATTCCGCAAGACGAGTACCAAAGGCGACTACGCAACGCGTTTGTGGTAC
TACGACAAGCTGCTTTTCATCGCTGACCACAAGCCCAAGCGCCACGAACT
CGGCTCCAAGCCCAAGAGAGAACTCCATATCAGCTTCGACGACGAGGAGT
CAATGGAGTTCGAGGACGACTCACATCACACGGGCACTCAGTCTCAGCAC
ATGGAGTCCATAATACCCACGTCCCCGGACGATGTGGAAGAAGTCGCGGC
GACGGCCAACAATGTGGTCGTCAGCAGTCAGGGCGCCACTCTGAGCACCA
TTTCGGTGACGCCCGCGGAATGTGTGACCCTTGTACAGAGCGAGGAGCAC
CAGGCGGCCGAAGCAGCGGCAGCCGCAGCCCCAGCACACCAACAAATGGT
AGCCCATGCAGCAGCCCAGACCTCCATTGCGGCGGGCGGCGGTCANGGAA
CTGCCGTGAAGGTCTTAAAGATCACTTCCCTAAACTCAACTCCCAGCGCG
AGAAAAACAACCGGTCAATCTCTGGAGCACACCAACAGCCACTCCACCTG
CAACAAACGAATGGCCAACATCAGGGCTTTCCCCCCATCCAGATAGGCCG
CAAATCCCAATCACCCATTGTTTGGCATAGCCCGGACCCCCTGCCTTATA
CCC

BO14617.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5180-RC 1517 CG5180-RC 109..1135 4..1027 4629 97.1 Plus
CG5180-RB 1341 CG5180-RB 1..959 72..1027 4289 96.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20558648..20559188 364..903 2434 97 Plus
3R 32079331 3R 20558243..20558592 17..366 1750 100 Plus
3R 32079331 3R 20559282..20559378 930..1027 275 87.8 Plus
Blast to na_te.dros performed on 2015-02-10 17:53:57 has no hits.

BO14617.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:02:46 Download gff for BO14617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5180-RB 106..1146 1..1038 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:44:19 Download gff for BO14617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5180-RC 106..1146 1..1038 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:56 Download gff for BO14617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5180-RC 106..1146 1..1038 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:56 Download gff for BO14617.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20558237..20558591 8..365 98 -> Plus
3R 20558650..20559196 366..910 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:44:19 Download gff for BO14617.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16383959..16384313 8..365 98 -> Plus
arm_3R 16384372..16384918 366..910 97 -> Plus

BO14617.pep Sequence

Translation from 17 to 1268

> BO14617.pep
MQYKGLDTISTAMICLGWQRPDVCGAANFTRDAAKTKNTKLKLIEKTPNK
TRVKGTMNLDLRSYSRHWLTEFIEQYQEEECLWQPKHNDYSNHTARNKSY
DRLVEKLKEVEPNPDRAMVVRKINSLRSAFRREFRKTSTKGDYATRLWYY
DKLLFIADHKPKRHELGSKPKRELHISFDDEESMEFEDDSHHTGTQSQHM
ESIIPTSPDDVEEVAATANNVVVSSQGATLSTISVTPAECVTLVKSEEHQ
AAEAAAAAAQAHQQMVAHAAAQTSIAAAAAQGHAVKVLEITSLDSNSQRE
IQQAVNHLEHHQQQLHLQQTNGQHQGVPTIQIGRDHYQPLFGNAGTTAYT
TTAATSTSHRQDDEYDAIGVNVASKLRSINPTQRIVAEKLISDVLFNAQL
GNLTVHSALTQASFLDH

BO14617.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5180-PC 355 CG5180-PC 1..355 57..411 1829 100 Plus
CG5180-PB 355 CG5180-PB 1..355 57..411 1829 100 Plus
CG3163-PA 368 CG3163-PA 3..351 68..406 215 22.9 Plus
CG3386-PD 288 CG3386-PD 14..147 66..188 161 29.1 Plus
CG3386-PC 288 CG3386-PC 14..147 66..188 161 29.1 Plus