Clone Sequence Records
BO14617.complete Sequence
1268 bp assembled on 2010-04-09
GenBank Submission: KX795177
> BO14617.complete
GAAGTTATCAGTCGGACATGCAATACAAAGGGCTCGATACCATCTCGACC
GCGATGATTTGTTTGGGTTGGCAACGCCCCGACGTTTGTGGCGCAGCCAA
CTTCACGCGAGACGCAGCGAAAACAAAAAATACTAAGCTGAAGTTAATTG
AGAAAACCCCAAATAAAACGCGAGTGAAAGGGACCATGAACTTAGACCTG
CGTTCGTACTCACGCCACTGGCTCACGGAGTTTATCGAGCAGTACCAAGA
GGAGGAGTGCCTCTGGCAGCCCAAGCACAACGACTACAGCAATCACACAG
CCCGTAACAAGTCCTACGATCGCCTGGTGGAGAAGCTAAAAGAAGTGGAG
CCCAATCCGGACAGGGCGATGGTAGTAAGGAAAATTAACTCACTGCGGTC
CGCTTTTCGGCGGGAATTCCGCAAGACGAGTACCAAAGGCGACTACGCAA
CGCGTTTGTGGTACTACGACAAGCTGCTTTTCATCGCTGACCACAAGCCC
AAGCGCCACGAACTCGGCTCCAAGCCCAAGAGAGAACTCCATATCAGCTT
CGACGACGAGGAGTCAATGGAGTTCGAGGACGACTCACATCACACGGGCA
CTCAGTCTCAGCACATGGAGTCCATAATACCCACGTCCCCGGACGATGTG
GAAGAAGTCGCGGCGACGGCCAACAATGTGGTCGTCAGCAGTCAGGGCGC
CACTCTGAGCACCATTTCGGTGACGCCCGCGGAATGTGTGACCCTTGTCA
AGAGCGAGGAGCACCAGGCGGCCGAAGCAGCGGCAGCCGCAGCCCAAGCA
CACCAGCAAATGGTAGCCCATGCAGCAGCCCAGACCTCCATTGCGGCGGC
GGCGGCTCAGGGACATGCCGTGAAGGTCTTAGAGATCACCTCCCTAGACT
CCAACTCCCAGCGCGAGATACAACAAGCGGTCAATCATCTGGAGCACCAC
CAGCAGCAGCTCCACCTGCAGCAGACGAATGGCCAACATCAGGGCGTTCC
CACCATCCAGATAGGCCGCGATCACTATCAGCCATTGTTTGGCAATGCCG
GCACCACTGCCTATACCACCACAGCGGCTACGAGCACATCGCACCGGCAA
GACGACGAGTACGATGCCATTGGCGTGAATGTGGCGAGCAAACTGCGCTC
CATCAACCCGACGCAGCGGATCGTGGCCGAGAAACTGATCAGCGACGTTC
TATTCAACGCACAGCTGGGCAACCTCACCGTTCACTCGGCCCTCACGCAG
GCAAGCTTTCTAGACCAT
BO14617.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5180-RC | 1068 | CG5180-PC | 1..1065 | 186..1250 | 5325 | 100 | Plus |
CG5180-RB | 1068 | CG5180-PB | 1..1065 | 186..1250 | 5325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:43:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5180-RC | 1517 | CG5180-RC | 109..1341 | 18..1250 | 6165 | 100 | Plus |
CG5180-RB | 1341 | CG5180-RB | 1..1165 | 86..1250 | 5825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20558648..20559197 | 378..927 | 2750 | 100 | Plus |
3R | 32079331 | 3R | 20558243..20558592 | 31..380 | 1750 | 100 | Plus |
3R | 32079331 | 3R | 20559261..20559584 | 927..1250 | 1620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:43:38 has no hits.
BO14617.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:29:16 Download gff for
BO14617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5180-RB | 108..1341 | 17..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:59 Download gff for
BO14617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5180-RC | 108..1341 | 17..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:23:43 Download gff for
BO14617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5180-RC | 108..1341 | 17..1252 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:23:43 Download gff for
BO14617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20558244..20558591 | 32..379 | 100 | -> | Plus |
3R | 20558650..20559196 | 380..926 | 100 | -> | Plus |
3R | 20559261..20559584 | 927..1252 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:59 Download gff for
BO14617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16383966..16384313 | 32..379 | 100 | -> | Plus |
arm_3R | 16384372..16384918 | 380..926 | 100 | -> | Plus |
arm_3R | 16384983..16385306 | 927..1252 | 99 | | Plus |
BO14617.5prime Sequence
1053 bp (843 high quality bases) assembled on 2010-02-21
> BO14617.5prime
GACATGCAATACAAAGGGCTCGATACCATCTCGACCGCGATGATTTGTTT
GGGTTGGCAACGCCCCGACGTTTGTGGCGCAGCCAACTTCACGCGAGACG
CAGCGAAAACAAAAAATACTAAGCTGAAGTTAATTGAGAAAACCCCAAAT
AAAACGCGAGTGAAAGGGACCATGAACTTAGACCTGCGTTCGTACTCACG
CCACTGGCTCACGGAGTTTATCGAGCAGTACCAAGAGGAGGAGTGCCTCT
GGCAGCCCAAGCACAACGACTACAGCAATCACACAGCCCGTAACAAGTCC
TACGATCGCCTGGTGGAGAAGCTAAAAGAAGTGGAGCCCAATCCGGACAG
GGCGATGGTAGTAAGGAAAATTAACTCACTGCGGTCCGCTTTTCGGCGGG
AATTCCGCAAGACGAGTACCAAAGGCGACTACGCAACGCGTTTGTGGTAC
TACGACAAGCTGCTTTTCATCGCTGACCACAAGCCCAAGCGCCACGAACT
CGGCTCCAAGCCCAAGAGAGAACTCCATATCAGCTTCGACGACGAGGAGT
CAATGGAGTTCGAGGACGACTCACATCACACGGGCACTCAGTCTCAGCAC
ATGGAGTCCATAATACCCACGTCCCCGGACGATGTGGAAGAAGTCGCGGC
GACGGCCAACAATGTGGTCGTCAGCAGTCAGGGCGCCACTCTGAGCACCA
TTTCGGTGACGCCCGCGGAATGTGTGACCCTTGTACAGAGCGAGGAGCAC
CAGGCGGCCGAAGCAGCGGCAGCCGCAGCCCCAGCACACCAACAAATGGT
AGCCCATGCAGCAGCCCAGACCTCCATTGCGGCGGGCGGCGGTCANGGAA
CTGCCGTGAAGGTCTTAAAGATCACTTCCCTAAACTCAACTCCCAGCGCG
AGAAAAACAACCGGTCAATCTCTGGAGCACACCAACAGCCACTCCACCTG
CAACAAACGAATGGCCAACATCAGGGCTTTCCCCCCATCCAGATAGGCCG
CAAATCCCAATCACCCATTGTTTGGCATAGCCCGGACCCCCTGCCTTATA
CCC
BO14617.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5180-RC | 1517 | CG5180-RC | 109..1135 | 4..1027 | 4629 | 97.1 | Plus |
CG5180-RB | 1341 | CG5180-RB | 1..959 | 72..1027 | 4289 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20558648..20559188 | 364..903 | 2434 | 97 | Plus |
3R | 32079331 | 3R | 20558243..20558592 | 17..366 | 1750 | 100 | Plus |
3R | 32079331 | 3R | 20559282..20559378 | 930..1027 | 275 | 87.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:53:57 has no hits.
BO14617.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:02:46 Download gff for
BO14617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5180-RB | 106..1146 | 1..1038 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 16:44:19 Download gff for
BO14617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5180-RC | 106..1146 | 1..1038 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:56 Download gff for
BO14617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5180-RC | 106..1146 | 1..1038 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:56 Download gff for
BO14617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20558237..20558591 | 8..365 | 98 | -> | Plus |
3R | 20558650..20559196 | 366..910 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 16:44:19 Download gff for
BO14617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16383959..16384313 | 8..365 | 98 | -> | Plus |
arm_3R | 16384372..16384918 | 366..910 | 97 | -> | Plus |
BO14617.pep Sequence
Translation from 17 to 1268
> BO14617.pep
MQYKGLDTISTAMICLGWQRPDVCGAANFTRDAAKTKNTKLKLIEKTPNK
TRVKGTMNLDLRSYSRHWLTEFIEQYQEEECLWQPKHNDYSNHTARNKSY
DRLVEKLKEVEPNPDRAMVVRKINSLRSAFRREFRKTSTKGDYATRLWYY
DKLLFIADHKPKRHELGSKPKRELHISFDDEESMEFEDDSHHTGTQSQHM
ESIIPTSPDDVEEVAATANNVVVSSQGATLSTISVTPAECVTLVKSEEHQ
AAEAAAAAAQAHQQMVAHAAAQTSIAAAAAQGHAVKVLEITSLDSNSQRE
IQQAVNHLEHHQQQLHLQQTNGQHQGVPTIQIGRDHYQPLFGNAGTTAYT
TTAATSTSHRQDDEYDAIGVNVASKLRSINPTQRIVAEKLISDVLFNAQL
GNLTVHSALTQASFLDH
BO14617.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:59:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5180-PC | 355 | CG5180-PC | 1..355 | 57..411 | 1829 | 100 | Plus |
CG5180-PB | 355 | CG5180-PB | 1..355 | 57..411 | 1829 | 100 | Plus |
CG3163-PA | 368 | CG3163-PA | 3..351 | 68..406 | 215 | 22.9 | Plus |
CG3386-PD | 288 | CG3386-PD | 14..147 | 66..188 | 161 | 29.1 | Plus |
CG3386-PC | 288 | CG3386-PC | 14..147 | 66..188 | 161 | 29.1 | Plus |