Clone BO14618 Report

Search the DGRC for BO14618

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:146
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG9306-RA
Protein status:BO14618.pep:
Sequenced Size:466

Clone Sequence Records

BO14618.3prime Sequence

464 bp (464 high quality bases) assembled on 2006-06-02

> BO14618.3prime
ATGGTCTAGAAAGCTTGCGTGGTGTCCCAGGTCCTTGGGGTCGGGCTTGC
CGTACTGCTTCTCCCACCAGGTCACAAACTCCTTCTTGCGCTGCTCCCGC
TTGGCAAAGTACTCGGGGTACTGGGCCTTCTCCAGGGGATGCCAGTAGTC
CAGGACCCAGTCGGGCGGAATCACCTCTCGTTCGAAAGCACAGCCACCGG
CACTGTTGGCAAAGTTTCGGGGCTGGAAATGCCTTGTCTCGAAAAGCTCC
CTTTGTCCACAGGCTAGGAGGCGGATGCCCTCGCCCAGATCTTTGGAGCG
GTTTTCGTCGAAGCGAGCACGCAGCTGCACAGCGCGGTAGCGGTAGACAT
TGCGTCGGTCGTACCACGACTCTAAGTTGCGCAGTGCTCGCTTGTACAGG
CTGCACACCTGGCGCTTGTGCGAGACGATTGCCAAGGGAACTTGGGCCAT
GTCGACTGATAACT

BO14618.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9306-PA 435 CG9306-RA 1..432 450..19 2160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9306-RB 687 CG9306-RB 172..603 450..19 2160 100 Minus
CG9306-RA 787 CG9306-RA 88..519 450..19 2160 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13370371..13370564 19..212 970 100 Plus
2L 23513712 2L 13370624..13370764 213..353 705 100 Plus
2L 23513712 2L 13370842..13370939 353..450 490 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:19:59 has no hits.

BO14618.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:06 Download gff for BO14618.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9306-PA 1..435 15..450 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:02 Download gff for BO14618.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9306-PA 1..435 15..450 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:07 Download gff for BO14618.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9306-RA 88..526 11..450 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:50 Download gff for BO14618.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9306-RA 88..526 11..450 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:50 Download gff for BO14618.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13370624..13370763 213..352 100 <- Plus
2L 13370842..13370939 353..450 100   Plus
2L 13370364..13370564 11..212 98 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:07 Download gff for BO14618.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13370364..13370564 11..212 98 <- Plus
arm_2L 13370624..13370763 213..352 100 <- Plus
arm_2L 13370842..13370939 353..450 100   Plus

BO14618.5prime Sequence

464 bp (464 high quality bases) assembled on 2006-06-02

> BO14618.5prime
GAAGTTATCAGTCGACATGGCCCAAGTTCCCTTGGCAATCGTCTCGCACA
AGCGCCAGGTGTGCAGCCTGTACAAGCGAGCACTGCGCAACTTAGAGTCG
TGGTACGACCGACGCAATGTCTACCGCTACCGCGCTGTGCAGCTGCGTGC
TCGCTTCGACGAAAACCGCTCCAAAGATCTGGGCGAGGGCATCCGCCTCC
TAGCCTGTGGACAAAGGGAGCTTTTCGAGACAAGGCATTTCCAGCCCCGA
AACTTTGCCAACAGTGCCGGTGGCTGTGCTTTCGAACGAGAGGTGATTCC
GCCCGACTGGGTCCTGGACTACTGGCATCCCCTGGAGAAGGCCCAGTACC
CCGAGTACTTTGCCAAGCGGGAGCAGCGCAAGAAGGAGTTTGTGACCTGG
TGGGAGAAGCAGTACGGCAAGCCCGACCCCAAGGACCTGGGACACCACGC
AAGCTTTCTAGACC

BO14618.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9306-PA 435 CG9306-RA 1..432 17..448 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9306-RB 687 CG9306-RB 172..603 17..448 2160 100 Plus
CG9306-RA 787 CG9306-RA 88..519 17..448 2160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13370371..13370564 448..255 970 100 Minus
2L 23513712 2L 13370624..13370764 254..114 705 100 Minus
2L 23513712 2L 13370842..13370939 114..17 490 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:10:28 has no hits.

BO14618.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:07 Download gff for BO14618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9306-PA 1..435 17..452 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:03 Download gff for BO14618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9306-PA 1..435 17..452 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:57:25 Download gff for BO14618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9306-RA 88..526 17..456 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:41 Download gff for BO14618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9306-RA 88..526 17..456 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:41 Download gff for BO14618.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13370364..13370564 255..456 98 <- Minus
2L 13370624..13370763 115..254 100 <- Minus
2L 13370842..13370939 17..114 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:57:25 Download gff for BO14618.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13370364..13370564 255..456 98 <- Minus
arm_2L 13370624..13370763 115..254 100 <- Minus
arm_2L 13370842..13370939 17..114 100   Minus

BO14618.complete Sequence

466 bp assembled on 2007-06-22

GenBank Submission: FJ633199

> BO14618.complete
GAAGTTATCAGTCGACATGGCCCAAGTTCCCTTGGCAATCGTCTCGCACA
AGCGCCAGGTGTGCAGCCTGTACAAGCGAGCACTGCGCAACTTAGAGTCG
TGGTACGACCGACGCAATGTCTACCGCTACCGCGCTGTGCAGCTGCGTGC
TCGCTTCGACGAAAACCGCTCCAAAGATCTGGGCGAGGGCATCCGCCTCC
TAGCCTGTGGACAAAGGGAGCTTTTCGAGACAAGGCATTTCCAGCCCCGA
AACTTTGCCAACAGTGCCGGTGGCTGTGCTTTCGAACGAGAGGTGATTCC
GCCCGACTGGGTCCTGGACTACTGGCATCCCCTGGAGAAGGCCCAGTACC
CCGAGTACTTTGCCAAGCGGGAGCAGCGCAAGAAGGAGTTTGTGACCTGG
TGGGAGAAGCAGTACGGCAAGCCCGACCCCAAGGACCTGGGACACCACGC
AAGCTTTCTAGACCAT

BO14618.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9306-RB 435 CG9306-PB 1..432 17..448 2160 100 Plus
CG9306-RA 435 CG9306-PA 1..432 17..448 2160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9306-RB 687 CG9306-RB 172..603 17..448 2160 100 Plus
CG9306-RA 787 CG9306-RA 88..519 17..448 2160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13370371..13370564 448..255 970 100 Minus
2L 23513712 2L 13370624..13370764 254..114 705 100 Minus
2L 23513712 2L 13370842..13370939 114..17 490 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:15:07 has no hits.

BO14618.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:55 Download gff for BO14618.complete
Subject Subject Range Query Range Percent Splice Strand
CG9306-RA 1..435 17..452 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:19 Download gff for BO14618.complete
Subject Subject Range Query Range Percent Splice Strand
CG9306-RA 145..583 17..456 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:52 Download gff for BO14618.complete
Subject Subject Range Query Range Percent Splice Strand
CG9306-RA 88..519 17..450 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:56 Download gff for BO14618.complete
Subject Subject Range Query Range Percent Splice Strand
CG9306-RA 145..583 17..456 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:54 Download gff for BO14618.complete
Subject Subject Range Query Range Percent Splice Strand
CG9306-RA 88..519 17..450 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:54 Download gff for BO14618.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13370624..13370763 115..254 100 <- Minus
2L 13370842..13370939 17..114 100   Minus
2L 13370369..13370564 255..450 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:52 Download gff for BO14618.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13370624..13370763 115..254 100 <- Minus
arm_2L 13370842..13370939 17..114 100   Minus
arm_2L 13370369..13370564 255..450 98 <- Minus

BO14618.pep Sequence

Translation from 16 to 466

> BO14618.pep
MAQVPLAIVSHKRQVCSLYKRALRNLESWYDRRNVYRYRAVQLRARFDEN
RSKDLGEGIRLLACGQRELFETRHFQPRNFANSAGGCAFEREVIPPDWVL
DYWHPLEKAQYPEYFAKREQRKKEFVTWWEKQYGKPDPKDLGHHASFLDH

BO14618.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9306-PB 144 CG9306-PB 1..144 1..144 796 100 Plus
CG9306-PA 144 CG9306-PA 1..144 1..144 796 100 Plus