Clone Sequence Records
BO14618.3prime Sequence
464 bp (464 high quality bases) assembled on 2006-06-02
> BO14618.3prime
ATGGTCTAGAAAGCTTGCGTGGTGTCCCAGGTCCTTGGGGTCGGGCTTGC
CGTACTGCTTCTCCCACCAGGTCACAAACTCCTTCTTGCGCTGCTCCCGC
TTGGCAAAGTACTCGGGGTACTGGGCCTTCTCCAGGGGATGCCAGTAGTC
CAGGACCCAGTCGGGCGGAATCACCTCTCGTTCGAAAGCACAGCCACCGG
CACTGTTGGCAAAGTTTCGGGGCTGGAAATGCCTTGTCTCGAAAAGCTCC
CTTTGTCCACAGGCTAGGAGGCGGATGCCCTCGCCCAGATCTTTGGAGCG
GTTTTCGTCGAAGCGAGCACGCAGCTGCACAGCGCGGTAGCGGTAGACAT
TGCGTCGGTCGTACCACGACTCTAAGTTGCGCAGTGCTCGCTTGTACAGG
CTGCACACCTGGCGCTTGTGCGAGACGATTGCCAAGGGAACTTGGGCCAT
GTCGACTGATAACT
BO14618.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9306-PA | 435 | CG9306-RA | 1..432 | 450..19 | 2160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:20:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9306-RB | 687 | CG9306-RB | 172..603 | 450..19 | 2160 | 100 | Minus |
CG9306-RA | 787 | CG9306-RA | 88..519 | 450..19 | 2160 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:19:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13370371..13370564 | 19..212 | 970 | 100 | Plus |
2L | 23513712 | 2L | 13370624..13370764 | 213..353 | 705 | 100 | Plus |
2L | 23513712 | 2L | 13370842..13370939 | 353..450 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:19:59 has no hits.
BO14618.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:06 Download gff for
BO14618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-PA | 1..435 | 15..450 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:02 Download gff for
BO14618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-PA | 1..435 | 15..450 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:38:07 Download gff for
BO14618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-RA | 88..526 | 11..450 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:50 Download gff for
BO14618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-RA | 88..526 | 11..450 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:50 Download gff for
BO14618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13370624..13370763 | 213..352 | 100 | <- | Plus |
2L | 13370842..13370939 | 353..450 | 100 | | Plus |
2L | 13370364..13370564 | 11..212 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:38:07 Download gff for
BO14618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13370364..13370564 | 11..212 | 98 | <- | Plus |
arm_2L | 13370624..13370763 | 213..352 | 100 | <- | Plus |
arm_2L | 13370842..13370939 | 353..450 | 100 | | Plus |
BO14618.5prime Sequence
464 bp (464 high quality bases) assembled on 2006-06-02
> BO14618.5prime
GAAGTTATCAGTCGACATGGCCCAAGTTCCCTTGGCAATCGTCTCGCACA
AGCGCCAGGTGTGCAGCCTGTACAAGCGAGCACTGCGCAACTTAGAGTCG
TGGTACGACCGACGCAATGTCTACCGCTACCGCGCTGTGCAGCTGCGTGC
TCGCTTCGACGAAAACCGCTCCAAAGATCTGGGCGAGGGCATCCGCCTCC
TAGCCTGTGGACAAAGGGAGCTTTTCGAGACAAGGCATTTCCAGCCCCGA
AACTTTGCCAACAGTGCCGGTGGCTGTGCTTTCGAACGAGAGGTGATTCC
GCCCGACTGGGTCCTGGACTACTGGCATCCCCTGGAGAAGGCCCAGTACC
CCGAGTACTTTGCCAAGCGGGAGCAGCGCAAGAAGGAGTTTGTGACCTGG
TGGGAGAAGCAGTACGGCAAGCCCGACCCCAAGGACCTGGGACACCACGC
AAGCTTTCTAGACC
BO14618.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9306-PA | 435 | CG9306-RA | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:10:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9306-RB | 687 | CG9306-RB | 172..603 | 17..448 | 2160 | 100 | Plus |
CG9306-RA | 787 | CG9306-RA | 88..519 | 17..448 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13370371..13370564 | 448..255 | 970 | 100 | Minus |
2L | 23513712 | 2L | 13370624..13370764 | 254..114 | 705 | 100 | Minus |
2L | 23513712 | 2L | 13370842..13370939 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:10:28 has no hits.
BO14618.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:07 Download gff for
BO14618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-PA | 1..435 | 17..452 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:03 Download gff for
BO14618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-PA | 1..435 | 17..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:57:25 Download gff for
BO14618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-RA | 88..526 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:41 Download gff for
BO14618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-RA | 88..526 | 17..456 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:41 Download gff for
BO14618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13370364..13370564 | 255..456 | 98 | <- | Minus |
2L | 13370624..13370763 | 115..254 | 100 | <- | Minus |
2L | 13370842..13370939 | 17..114 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:57:25 Download gff for
BO14618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13370364..13370564 | 255..456 | 98 | <- | Minus |
arm_2L | 13370624..13370763 | 115..254 | 100 | <- | Minus |
arm_2L | 13370842..13370939 | 17..114 | 100 | | Minus |
BO14618.complete Sequence
466 bp assembled on 2007-06-22
GenBank Submission: FJ633199
> BO14618.complete
GAAGTTATCAGTCGACATGGCCCAAGTTCCCTTGGCAATCGTCTCGCACA
AGCGCCAGGTGTGCAGCCTGTACAAGCGAGCACTGCGCAACTTAGAGTCG
TGGTACGACCGACGCAATGTCTACCGCTACCGCGCTGTGCAGCTGCGTGC
TCGCTTCGACGAAAACCGCTCCAAAGATCTGGGCGAGGGCATCCGCCTCC
TAGCCTGTGGACAAAGGGAGCTTTTCGAGACAAGGCATTTCCAGCCCCGA
AACTTTGCCAACAGTGCCGGTGGCTGTGCTTTCGAACGAGAGGTGATTCC
GCCCGACTGGGTCCTGGACTACTGGCATCCCCTGGAGAAGGCCCAGTACC
CCGAGTACTTTGCCAAGCGGGAGCAGCGCAAGAAGGAGTTTGTGACCTGG
TGGGAGAAGCAGTACGGCAAGCCCGACCCCAAGGACCTGGGACACCACGC
AAGCTTTCTAGACCAT
BO14618.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9306-RB | 435 | CG9306-PB | 1..432 | 17..448 | 2160 | 100 | Plus |
CG9306-RA | 435 | CG9306-PA | 1..432 | 17..448 | 2160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9306-RB | 687 | CG9306-RB | 172..603 | 17..448 | 2160 | 100 | Plus |
CG9306-RA | 787 | CG9306-RA | 88..519 | 17..448 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13370371..13370564 | 448..255 | 970 | 100 | Minus |
2L | 23513712 | 2L | 13370624..13370764 | 254..114 | 705 | 100 | Minus |
2L | 23513712 | 2L | 13370842..13370939 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:15:07 has no hits.
BO14618.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:55 Download gff for
BO14618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-RA | 1..435 | 17..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:19 Download gff for
BO14618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-RA | 145..583 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:52 Download gff for
BO14618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-RA | 88..519 | 17..450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:56 Download gff for
BO14618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-RA | 145..583 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:54 Download gff for
BO14618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9306-RA | 88..519 | 17..450 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:54 Download gff for
BO14618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13370624..13370763 | 115..254 | 100 | <- | Minus |
2L | 13370842..13370939 | 17..114 | 100 | | Minus |
2L | 13370369..13370564 | 255..450 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:52 Download gff for
BO14618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13370624..13370763 | 115..254 | 100 | <- | Minus |
arm_2L | 13370842..13370939 | 17..114 | 100 | | Minus |
arm_2L | 13370369..13370564 | 255..450 | 98 | <- | Minus |
BO14618.pep Sequence
Translation from 16 to 466
> BO14618.pep
MAQVPLAIVSHKRQVCSLYKRALRNLESWYDRRNVYRYRAVQLRARFDEN
RSKDLGEGIRLLACGQRELFETRHFQPRNFANSAGGCAFEREVIPPDWVL
DYWHPLEKAQYPEYFAKREQRKKEFVTWWEKQYGKPDPKDLGHHASFLDH
BO14618.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9306-PB | 144 | CG9306-PB | 1..144 | 1..144 | 796 | 100 | Plus |
CG9306-PA | 144 | CG9306-PA | 1..144 | 1..144 | 796 | 100 | Plus |