Clone Sequence Records
BO14619.3prime Sequence
789 bp (733 high quality bases) assembled on 2006-06-16
> BO14619.3prime
ATGGTCTAGAAAGCTTGCTTTTCTGAATCGGAATCTAACATTTTCCAGAC
CATGCGCCTGACGTTTCAGACTGCCGCTGTCGGCCCAGGAGGAGTTGAGA
TACTCGTCGTCATCGTCTTGCTCAAGTTTCTTGAGTTCCTCCTGGCGGCG
ATAGGCCTCGGCCATCATCTGGCGACGCAAGGGATCGGAGATCACGGCTT
CGCGTCCCGGTGGTCCTTCACCAATTTGATTCAGCTTCACGACCACCTTG
GTTTTGTCGTTGTGACCCAAATAGTCGCTCATTAGCTTCCCCATCAGCAT
CTGGTGTCCTGCAAACCAGAACTGAGCCTTGGACGGTTCGATGACCTCCT
TGGAGGCCTGGGTGCCAGTCAGATCCTCGGTATTGGTGAACTCCATGCGT
ATGGAGTCGTGGGGCGGCAATTGCATGGGATATACAATAGTGACACCACC
ACGCAGGAGGTTCAACGCCTCCTCAACGATCTTTGGGGTCAAGGTCTTTG
AGGATTTAGCTAAGCGCCGATCCACCATAGCCTTGGCGTCGTTCATGGCA
CCTGCAAGGACCTTTTGCATCGCCTCAGTTGGCTGCTGTCCGTTACGGCG
AAGGAGCGGATCCTTGTTGATAGTGAAACCACCAGACGGGATGCACTTAT
CCGCCCAGACATCCTTAAGCTTGAGCTCTTCCCTCTGTTCCTCGTTGAGG
CCAATCATTTCAGGCGGCACCATGGTGCCATGTTCGGCCAGCTCCTCAAT
CTCCATGCAGACACGCTGAATCTTCAGTTGACCATTGTG
BO14619.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18675-PA | 876 | CG18675-RA | 103..873 | 789..19 | 3805 | 99.7 | Minus |
CG1232-PA | 1359 | tipE-RA | 1295..1359 | 130..66 | 325 | 100 | Minus |
CG1232-PB | 1359 | tipE-RB | 1295..1359 | 130..66 | 325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18675-RA | 1608 | CG18675-RA | 172..942 | 789..19 | 3825 | 99.7 | Minus |
tipE-RB | 3938 | CG1232-RB | 2341..2452 | 130..19 | 560 | 100 | Minus |
tipE-RA | 3396 | CG1232-RA | 2487..2598 | 130..19 | 560 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4174393..4174665 | 517..245 | 1365 | 100 | Minus |
3L | 28110227 | 3L | 4174055..4174327 | 789..517 | 1350 | 99.6 | Minus |
3L | 28110227 | 3L | 4174724..4174842 | 248..130 | 580 | 99.2 | Minus |
3L | 28110227 | 3L | 4192190..4192302 | 131..19 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:25:21 has no hits.
BO14619.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:08 Download gff for
BO14619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-PA | 103..876 | 16..789 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:04 Download gff for
BO14619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-PA | 103..876 | 16..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:47:53 Download gff for
BO14619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-RA | 172..947 | 13..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:49:36 Download gff for
BO14619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-RA | 172..947 | 13..789 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:49:36 Download gff for
BO14619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4192192..4192307 | 13..129 | 97 | | Minus |
3L | 4174055..4174327 | 517..789 | 99 | -> | Minus |
3L | 4174394..4174663 | 247..516 | 100 | -> | Minus |
3L | 4174726..4174842 | 130..246 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:47:53 Download gff for
BO14619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4174055..4174327 | 517..789 | 99 | -> | Minus |
arm_3L | 4174394..4174663 | 247..516 | 100 | -> | Minus |
arm_3L | 4174726..4174842 | 130..246 | 99 | -> | Minus |
arm_3L | 4192192..4192307 | 13..129 | 97 | | Minus |
BO14619.5prime Sequence
868 bp (788 high quality bases) assembled on 2006-06-16
> BO14619.5prime
GAAGTTATCAGTCGACATGGTGCTTCTCCAGGTGAAACGCGGAGACGAGC
TTATCTTCCTCTATGAGACAAGCGTTAAGGAGAAGACCGATACTGTGCTT
CGCGAGCTTGTGGCTCTGCACAATGGTCAACTGAAGATTCAGCGTGTCTG
CATGGAGATTGAGGAGCTGGCCGAACATGGCACCATGGTGCCGCCTGAAA
TGATTGGCCTCAACGAGGAACAGAGGGAAGAGCTCAAGCTTAAGGATGTC
TGGGCGGATAAGTGCATCCCGTCTGGTGGTTTCACTATCAACAAGGATCC
GCTCCTTCGCCGTAACGGACAGCAGCCAACTGAGGCGATGCAAAAGGTCC
TTGCAGGTGCCATGAACGACGCCAAGGCTATGGTGGATCGGCGCTTAGCT
AAATCCTCAAAGACCTTGACCCCAAAGATCGTTGAGGAGGCGTTGAACCT
CCTGCGTGGTGGTGTCACTATTGTATATCCCATGCAATTGCCGCCCCACG
ACTCCATACGCATGGAGTTCACCAATACCGAGGATCTGACTGGCACCCAG
GCCTCCAAGGAGGTCATCGAACCGTCCAAGGCTCAGTTCTGGTTTGCAGG
ACACCAGATGCTGATGGGGAAGCTAATGAGCGACTATTTGGGTCACAACG
ACAAAACCAAGGTGGTCGTGAAGCTGAATCAAATTGGTGAAGGACCACCG
GGACGCGAAGCCGTGATCTCCGATCCCTTGCGTCGCCAGATGATGGCCGA
GGCCTATCGCCGCCAGGAGGAACTCAAGAAACTTGAGCAAGACGATGACG
ACGAGTATCTCAACTCCTCCTGGGCCGACAGCGGCAGTCTGAAACGTCAG
GCGCATGGTCTGGAAAAT
BO14619.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18675-PA | 876 | CG18675-RA | 1..852 | 17..868 | 4160 | 99.5 | Plus |
CG1232-PA | 1359 | tipE-RA | 1295..1359 | 778..842 | 325 | 100 | Plus |
CG1232-PB | 1359 | tipE-RB | 1295..1359 | 778..842 | 325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18675-RA | 1608 | CG18675-RA | 66..921 | 13..868 | 4205 | 99.4 | Plus |
tipE-RB | 3938 | CG1232-RB | 2341..2431 | 778..868 | 455 | 100 | Plus |
tipE-RA | 3396 | CG1232-RA | 2487..2577 | 778..868 | 455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4173949..4174327 | 13..391 | 1835 | 98.9 | Plus |
3L | 28110227 | 3L | 4174393..4174665 | 391..663 | 1365 | 100 | Plus |
3L | 28110227 | 3L | 4174724..4174842 | 660..778 | 580 | 99.2 | Plus |
3L | 28110227 | 3L | 4192190..4192281 | 777..868 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:07:56 has no hits.
BO14619.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:09 Download gff for
BO14619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:05 Download gff for
BO14619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:57:10 Download gff for
BO14619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-RA | 57..921 | 5..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:01:25 Download gff for
BO14619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-RA | 57..921 | 5..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:01:25 Download gff for
BO14619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4174394..4174663 | 392..661 | 100 | -> | Plus |
3L | 4174726..4174842 | 662..778 | 99 | -> | Plus |
3L | 4192192..4192281 | 779..868 | 100 | | Plus |
3L | 4173940..4174327 | 5..391 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:57:10 Download gff for
BO14619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4173940..4174327 | 5..391 | 98 | -> | Plus |
arm_3L | 4174394..4174663 | 392..661 | 100 | -> | Plus |
arm_3L | 4174726..4174842 | 662..778 | 99 | -> | Plus |
arm_3L | 4192192..4192281 | 779..868 | 100 | | Plus |
BO14619.complete Sequence
907 bp (907 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633200
> BO14619.complete
GAAGTTATCAGTCGACATGGTGCTTCTCCAGGTGAAACGCGGAGACGAGC
TTATCTTCCTCTATGAGACAAGCGTTAAGGAGAAGACCGATACTGTGCTT
CGCGAGCTTGTGGCTCTGCACAATGGTCAACTGAAGATTCAGCGTGTCTG
CATGGAGATTGAGGAGCTGGCCGAACATGGCACCATGGTGCCGCCTGAAA
TGATTGGCCTCAACGAGGAACAGAGGGAAGAGCTCAAGCTTAAGGATGTC
TGGGCGGATAAGTGCATCCCGTCTGGTGGTTTCACTATCAACAAGGATCC
GCTCCTTCGCCGTAACGGACAGCAGCCAACTGAGGCGATGCAAAAGGTCC
TTGCAGGTGCCATGAACGACGCCAAGGCTATGGTGGATCGGCGCTTAGCT
AAATCCTCAAAGACCTTGACCCCAAAGATCGTTGAGGAGGCGTTGAACCT
CCTGCGTGGTGGTGTCACTATTGTATATCCCATGCAATTGCCGCCCCACG
ACTCCATACGCATGGAGTTCACCAATACCGAGGATCTGACTGGCACCCAG
GCCTCCAAGGAGGTCATCGAACCGTCCAAGGCTCAGTTCTGGTTTGCAGG
ACACCAGATGCTGATGGGGAAGCTAATGAGCGACTATTTGGGTCACAACG
ACAAAACCAAGGTGGTCGTGAAGCTGAATCAAATTGGTGAAGGACCACCG
GGACGCGAAGCCGTGATCTCCGATCCCTTGCGTCGCCAGATGATGGCCGA
GGCCTATCGCCGCCAGGAGGAACTCAAGAAACTTGAGCAAGACGATGACG
ACGAGTATCTCAACTCCTCCTGGGCCGACAGCGGCAGTCTGAAACGTCAG
GCGCATGGTCTGGAAAATGTTAGATTCCGATTCAGAAAAGCAAGCTTTCT
AGACCAT
BO14619.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18675-RA | 876 | CG18675-PA | 1..873 | 17..889 | 4305 | 99.5 | Plus |
tipE-RB | 1359 | CG1232-PB | 1295..1359 | 778..842 | 325 | 100 | Plus |
tipE-RA | 1359 | CG1232-PA | 1295..1359 | 778..842 | 325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:15:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18675-RA | 1608 | CG18675-RA | 66..942 | 13..889 | 4310 | 99.4 | Plus |
tipE-RB | 3938 | CG1232-RB | 2341..2452 | 778..889 | 560 | 100 | Plus |
tipE-RA | 3396 | CG1232-RA | 2487..2598 | 778..889 | 560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4173949..4174327 | 13..391 | 1835 | 98.9 | Plus |
3L | 28110227 | 3L | 4174393..4174665 | 391..663 | 1365 | 100 | Plus |
3L | 28110227 | 3L | 4174724..4174842 | 660..778 | 580 | 99.2 | Plus |
3L | 28110227 | 3L | 4192190..4192302 | 777..889 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:15:38 has no hits.
BO14619.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:57 Download gff for
BO14619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-RA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:17 Download gff for
BO14619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-RA | 101..969 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:46 Download gff for
BO14619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-RA | 70..938 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:57 Download gff for
BO14619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-RA | 88..978 | 5..895 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:14 Download gff for
BO14619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18675-RA | 70..938 | 17..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:14 Download gff for
BO14619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4173953..4174327 | 17..391 | 99 | -> | Plus |
3L | 4174394..4174663 | 392..661 | 100 | -> | Plus |
3L | 4174726..4174842 | 662..778 | 99 | -> | Plus |
3L | 4192192..4192298 | 779..885 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:46 Download gff for
BO14619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4173953..4174327 | 17..391 | 99 | -> | Plus |
arm_3L | 4174394..4174663 | 392..661 | 100 | -> | Plus |
arm_3L | 4174726..4174842 | 662..778 | 99 | -> | Plus |
arm_3L | 4192192..4192298 | 779..885 | 100 | | Plus |
BO14619.pep Sequence
Translation from 16 to 907
> BO14619.pep
MVLLQVKRGDELIFLYETSVKEKTDTVLRELVALHNGQLKIQRVCMEIEE
LAEHGTMVPPEMIGLNEEQREELKLKDVWADKCIPSGGFTINKDPLLRRN
GQQPTEAMQKVLAGAMNDAKAMVDRRLAKSSKTLTPKIVEEALNLLRGGV
TIVYPMQLPPHDSIRMEFTNTEDLTGTQASKEVIEPSKAQFWFAGHQMLM
GKLMSDYLGHNDKTKVVVKLNQIGEGPPGREAVISDPLRRQMMAEAYRRQ
EELKKLEQDDDDEYLNSSWADSGSLKRQAHGLENVRFRFRKASFLDH
BO14619.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18675-PA | 291 | CG18675-PA | 1..291 | 1..291 | 1495 | 100 | Plus |