Clone Sequence Records
BO14622.3prime Sequence
786 bp (706 high quality bases) assembled on 2006-06-16
> BO14622.3prime
ATGGTCTAGAAAGCTTGCCATATAAAAATACTCGTATTCGGGCCGGGACA
CAGGCTTCGAAAGATATAGCAATCTGATCTGGTGGAGACGCCATCCCTGG
GGAGTAAACTTCTTCCTCCGTGGCGGTTTGACATTAAGCACGTCATATAT
ATGCTCCGGATGATAGCAATGCGGTGGGAACTGAGGCGTGATCTTTGGTT
TCGACAGGCTAAGGATGCGCGGAGTTATCCTGGCTTTGAGAGCAGCCTTG
CGGATGGGAAAGCGCAGTTCGGCCCACCATTTGTCCTCGATGTCGGCATT
GAAGAAGCAGCAGGGTTTTTGAGGGGGCTTAAAGGGTCGTCCTTTGTCAT
GGAGTGGCGGCTGACCCCAGACAATTATTGGGGAGTACGGTTGGACCGGA
TAGATGTACTGATGCTTCGGCGTCATTTTCCGTTCCAGTGGCGTGGCCAA
CTTGGCGACCTTCTCCTGAAATTCGTCCGGATCGATTGCGCGTGGTTTTC
TGGCGCATGGCAAGAACTTGTCAACACAGGGTATGGGCTGTTTGACCGGC
ACCGGTAGTTCCTTTGGCATGGCTCTGGAGGCTGCCCACTCGTAGAACTC
CCTCCACTGTGCCTTTTTCATCGGTCCGGGAATTTGCCATCTGGTTAGAT
AGCGCCTCTCCTTGATGAGCCGACGTTCGATCGGCTTGGCATTCCGCTCG
CACCATTCCACCCAACTCGGTGGCGGCTTTACCACGCTGATTACGCTGGC
CTTGGTCTCTTTCTGTATCATACTCATGTCGACTGA
BO14622.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3581-PA | 762 | CG3581-RA | 1..759 | 777..19 | 3745 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3581-RA | 1033 | CG3581-RA | 131..890 | 778..19 | 3770 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19373900..19374659 | 19..778 | 3770 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:04:30 has no hits.
BO14622.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:10 Download gff for
BO14622.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3581-PA | 1..762 | 15..777 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:07 Download gff for
BO14622.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3581-PA | 1..762 | 15..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:28:57 Download gff for
BO14622.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3581-RA | 123..893 | 15..785 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:49:28 Download gff for
BO14622.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3581-RA | 123..893 | 15..785 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:49:28 Download gff for
BO14622.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19373897..19374662 | 15..785 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:28:57 Download gff for
BO14622.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15199619..15200384 | 15..785 | 98 | | Plus |
BO14622.5prime Sequence
791 bp (674 high quality bases) assembled on 2006-06-16
> BO14622.5prime
GAAGTTATCAGTCGACATGAGTATGATACAAGAAGAGACCAAGGCCAGCG
TAATCAGCGTGGTAAAGCCGCCACCGAGTTGGGTGGAATGGTGCGAGCGG
AATGCCAAGCCGATCGAACGTCGGCTCATCAAGGAGAGGCGCTATCTAAC
CAGATGGCAAATTCCCGGACCGATGAAAAAGGCACAGTGGAGGGAGTTCT
ACGAGTGGGCAGCCTCCAGAGCCATGCCAAAGGAACTACCGGTGCCGGTC
AAACAGCCCATACCCTGTGTTGACAAGTTCTTGCCATGCGCCAGAAAACC
ACGCGCAATCGATCCGGACGAATTTCAGGAGAAGGTCGCCAAGTTGGCCA
CGCCACTGGAACGGAAAATGACGCCGAAGCATCAGTACATCTATCCGGTC
CAACCGTACTCCCCAATAATTGTCTGGGGTCAGCCGCCACTCCATGACAA
AGGACGACCCTTTAAGCCCCCTCAAAAACCCTGCTGCTTCTTCAATGCCG
ACATCGAGGACAAATGGTGGGCCGAACTGCGCTTTCCCATCCGCAAGGCT
GCTCTCAAAGCCAGGATAACTCCGCGCATCCTTAGCCTGTCGAAACCAAA
GATCACGCCTCAGTTCCCACCGCATTGCTATCATCCGGAGCATATATATG
ACGTGCTTAATGTCAAACCGCCACGGAGGAAGAAGTTTACTCCCCAGGGA
TGGCGTCTCCACCAGATCAGATTGCTATATCTTTCGAAGCCTGTGTCCCG
GCCCGAATACGAGTATTTTTATATGGCAAGCTTTCTAGACC
BO14622.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3581-PA | 762 | CG3581-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3581-RA | 1033 | CG3581-RA | 131..890 | 16..775 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:41:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19373900..19374659 | 775..16 | 3800 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:41:23 has no hits.
BO14622.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:11 Download gff for
BO14622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3581-PA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:09 Download gff for
BO14622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3581-PA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:10:27 Download gff for
BO14622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3581-RA | 121..893 | 7..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:54 Download gff for
BO14622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3581-RA | 121..893 | 7..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:54 Download gff for
BO14622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19373897..19374669 | 7..779 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:10:27 Download gff for
BO14622.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15199619..15200391 | 7..779 | 99 | | Minus |
BO14622.complete Sequence
793 bp (793 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633201
> BO14622.complete
GAAGTTATCAGTCGACATGAGTATGATACAAGAAGAGACCAAGGCCAGCG
TAATCAGCGTGGTAAAGCCGCCACCGAGTTGGGTGGAATGGTGCGAGCGG
AATGCCAAGCCGATCGAACGTCGGCTCATCAAGGAGAGGCGCTATCTAAC
CAGATGGCAAATTCCCGGACCGATGAAAAAGGCACAGTGGAGGGAGTTCT
ACGAGTGGGCAGCCTCCAGAGCCATGCCAAAGGAACTACCGGTGCCGGTC
AAACAGCCCATACCCTGTGTTGACAAGTTCTTGCCATGCGCCAGAAAACC
ACGCGCAATCGATCCGGACGAATTTCAGGAGAAGGTCGCCAAGTTGGCCA
CGCCACTGGAACGGAAAATGACGCCGAAGCATCAGTACATCTATCCGGTC
CAACCGTACTCCCCAATAATTGTCTGGGGTCAGCCGCCACTCCATGACAA
AGGACGACCCTTTAAGCCCCCTCAAAAACCCTGCTGCTTCTTCAATGCCG
ACATCGAGGACAAATGGTGGGCCGAACTGCGCTTTCCCATCCGCAAGGCT
GCTCTCAAAGCCAGGATAACTCCGCGCATCCTTAGCCTGTCGAAACCAAA
GATCACGCCTCAGTTCCCACCGCATTGCTATCATCCGGAGCATATATATG
ACGTGCTTAATGTCAAACCGCCACGGAGGAAGAAGTTTACTCCCCAGGGA
TGGCGTCTCCACCAGATCAGATTGCTATATCTTTCGAAGCCTGTGTCCCG
GCCCGAATACGAGTATTTTTATATGGCAAGCTTTCTAGACCAT
BO14622.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:48:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3581-RA | 762 | CG3581-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:48:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3581-RA | 1033 | CG3581-RA | 131..890 | 16..775 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:47:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19373900..19374659 | 775..16 | 3800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:47:59 has no hits.
BO14622.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:58 Download gff for
BO14622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3581-RA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:39 Download gff for
BO14622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3581-RA | 81..853 | 7..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:37:04 Download gff for
BO14622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3581-RA | 132..890 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:58 Download gff for
BO14622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3581-RA | 81..853 | 7..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:33 Download gff for
BO14622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3581-RA | 132..890 | 17..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:33 Download gff for
BO14622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19373898..19374658 | 17..777 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:37:04 Download gff for
BO14622.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15199620..15200380 | 17..777 | 99 | | Minus |
BO14622.pep Sequence
Translation from 16 to 793
> BO14622.pep
MSMIQEETKASVISVVKPPPSWVEWCERNAKPIERRLIKERRYLTRWQIP
GPMKKAQWREFYEWAASRAMPKELPVPVKQPIPCVDKFLPCARKPRAIDP
DEFQEKVAKLATPLERKMTPKHQYIYPVQPYSPIIVWGQPPLHDKGRPFK
PPQKPCCFFNADIEDKWWAELRFPIRKAALKARITPRILSLSKPKITPQF
PPHCYHPEHIYDVLNVKPPRRKKFTPQGWRLHQIRLLYLSKPVSRPEYEY
FYMASFLDH
BO14622.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3581-PA | 253 | CG3581-PA | 1..253 | 1..253 | 1410 | 100 | Plus |
| CG31404-PA | 274 | CG31404-PA | 30..274 | 4..251 | 605 | 50.8 | Plus |
| CG31245-PA | 237 | CG31245-PA | 10..227 | 21..245 | 279 | 33.5 | Plus |
