Clone BO14624 Report

Search the DGRC for BO14624

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:146
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptTsp33B-RA
Protein status:BO14624.pep: validated full length
Sequenced Size:1012

Clone Sequence Records

BO14624.5prime Sequence

752 bp (742 high quality bases) assembled on 2006-06-02

> BO14624.5prime
GAAGTTATCAGTCGACATGCGCCAGCCCTTCCGCCGAGCCTCCGTCTACC
TCCACCTGCTGTTAATAACCGAGGCCGTGATCGGACTGCTGATCCTGGTG
GTGACCGCCTACTACCACACCGTGCTCACCGGCTATCTATCGGATATTGA
GTGCCGCCTGGTCTACGGCTATCTGTTTGGGATCTACGTGTTTGGCGCCC
AGGTGGTGGTGACCTTTCTCTGCAGCATTGCCATGTGGCGGCGAATTTGG
CGGCGTCGCTGCACGCCGAACATTCGCCTCTTGCTATCCGTGTGGGCCTT
CTACTCCTGCGTAATCATTGCCTCCGGTTTCGGGTGCGTTTGGAATCTTT
ACCGGGGTGTCGATGTCCTCGAGAATGCGGCGGACACCTCGCTGACCCGC
GGCATCGACATGTACTACTCGTGTCCCGAGTGGAAACTCCTGTGGGACGG
ACTGCAGTGGCACAAGGAGTGCTGCGGGGTGCATGGCTACAAGGACTGGA
TGAACGCGGAGTGGATGCCACGGCGGGAGAATAACTGCACGTCGATGGTC
CTGGCACCCTTCGCCTGCTGCAAGCGCTCCTGCGACAGCTGCTTTAACAA
TTTCCTGCCCAGTGAGGGGCAGTCCATCGGTGGCAATAGCCGGCAGCCTT
TTCCCGCTCTCACCGTGGACTCAATCAATGCGAACGGATGCTTGCCTGCG
TTCGTTAGTGCGGTGTGGAACTGCTTTTACATCCTGATGGCGTTATGGGT
CC

BO14624.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14936-PA 981 Tsp33B-RA 1..736 17..752 3680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp33B-RA 1111 CG14936-RA 63..798 17..752 3680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11791568..11792303 752..17 3680 100 Minus
Blast to na_te.dros performed on 2015-02-02 07:39:56 has no hits.

BO14624.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:12 Download gff for BO14624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14936-PA 1..736 17..752 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:10 Download gff for BO14624.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14936-PA 1..736 17..752 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:44:26 Download gff for BO14624.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 63..798 17..752 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:14:09 Download gff for BO14624.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 63..798 17..752 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:14:09 Download gff for BO14624.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11791568..11792303 17..752 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:44:26 Download gff for BO14624.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11791568..11792303 17..752 100   Minus

BO14624.complete Sequence

1012 bp (1012 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633202

> BO14624.complete
GAAGTTATCAGTCGACATGCGCCAGCCCTTCCGCCGAGCCTCCGTCTACC
TCCACCTGCTGTTAATAACCGAGGCCGTGATCGGACTGCTGATCCTGGTG
GTGACCGCCTACTACCACACCGTGCTCACCGGCTATCTATCGGATATTGA
GTGCCGCCTGGTCTACGGCTATCTGTTTGGGATCTACGTGTTTGGCGCCC
AGGTGGTGGTGACCTTTCTCTGCAGCATTGCCATGTGGCGGCGAATTTGG
CGGCGTCGCTGCACGCCGAACATTCGCCTCTTGCTATCCGTGTGGGCCTT
CTACTCCTGCGTAATCATTGCCTCCGGTTTCGGGTGCGTTTGGAATCTTT
ACCGGGGTGTCGATGTCCTCGAGAATGCGGCGGACACCTCGCTGACCCGC
GGCATCGACATGTACTACTCGTGTCCCGAGTGGAAACTCCTGTGGGACGG
ACTGCAGTGGCACAAGGAGTGCTGCGGGGTGCATGGCTACAAGGACTGGA
TGAACGCGGAGTGGATGCCACGGCGGGAGAATAACTGCACGTCGATGGTC
CTGGCACCCTTCGCCTGCTGCAAGCGCTCCTGCGACAGCTGCTTTAACAA
TTTCCTGCCCAGTGAGGGGCAGTCCATCGGTGGCAATAGCCGGCAGCCTT
TTCCCGCTCTCACCGTGGACTCAATCAATGCGAACGGATGCTTGCCTGCG
TTCGTTAGTGCGGTGTGGAACTGCTTTTACATCCTGATGGCGTTATGGGT
CCTGGCCCTTAAGTTTCTGATCGTGCTTTGTTGTATGACCAAGTTCATAG
TTCACCGGCAGAACGAGGGCGATGGCTGCGATAATGTGGGGCTCACGGAC
GATGATGGCCATCCCTTGGTCGTGGTGAAATATCCGTGCAACGTGCGCTG
TGTGACAATTGCCGAGGATGATCTGGTATCCGACAACGTTCCCGATATTA
ACTACTGCAATTGCACCGAAATGGACGACGAACCGTGTGGATACGCAAGC
TTTCTAGACCAT

BO14624.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp33B-RA 981 CG14936-PA 1..978 17..994 4830 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp33B-RA 1111 CG14936-RA 63..1040 17..994 4830 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11791551..11792303 769..17 3765 100 Minus
2L 23513712 2L 11791096..11791213 994..877 560 98.3 Minus
2L 23513712 2L 11791268..11791376 877..769 515 98.2 Minus
Blast to na_te.dros performed on 2014-11-26 22:23:06 has no hits.

BO14624.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:12 Download gff for BO14624.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 1..981 17..998 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:09 Download gff for BO14624.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 63..1047 17..1002 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:18 Download gff for BO14624.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 63..1040 17..996 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:12 Download gff for BO14624.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 63..1047 17..1002 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:25 Download gff for BO14624.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp33B-RA 63..1040 17..996 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:25 Download gff for BO14624.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11791094..11791212 878..996 96 <- Minus
2L 11791268..11791375 770..877 98 <- Minus
2L 11791551..11792303 17..769 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:18 Download gff for BO14624.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11791094..11791212 878..996 96 <- Minus
arm_2L 11791268..11791375 770..877 98 <- Minus
arm_2L 11791551..11792303 17..769 100   Minus

BO14624.pep Sequence

Translation from 16 to 1012

> BO14624.pep
MRQPFRRASVYLHLLLITEAVIGLLILVVTAYYHTVLTGYLSDIECRLVY
GYLFGIYVFGAQVVVTFLCSIAMWRRIWRRRCTPNIRLLLSVWAFYSCVI
IASGFGCVWNLYRGVDVLENAADTSLTRGIDMYYSCPEWKLLWDGLQWHK
ECCGVHGYKDWMNAEWMPRRENNCTSMVLAPFACCKRSCDSCFNNFLPSE
GQSIGGNSRQPFPALTVDSINANGCLPAFVSAVWNCFYILMALWVLALKF
LIVLCCMTKFIVHRQNEGDGCDNVGLTDDDGHPLVVVKYPCNVRCVTIAE
DDLVSDNVPDINYCNCTEMDDEPCGYASFLDH

BO14624.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp33B-PA 326 CG14936-PA 1..326 1..326 1817 100 Plus