Clone Sequence Records
BO14624.5prime Sequence
752 bp (742 high quality bases) assembled on 2006-06-02
> BO14624.5prime
GAAGTTATCAGTCGACATGCGCCAGCCCTTCCGCCGAGCCTCCGTCTACC
TCCACCTGCTGTTAATAACCGAGGCCGTGATCGGACTGCTGATCCTGGTG
GTGACCGCCTACTACCACACCGTGCTCACCGGCTATCTATCGGATATTGA
GTGCCGCCTGGTCTACGGCTATCTGTTTGGGATCTACGTGTTTGGCGCCC
AGGTGGTGGTGACCTTTCTCTGCAGCATTGCCATGTGGCGGCGAATTTGG
CGGCGTCGCTGCACGCCGAACATTCGCCTCTTGCTATCCGTGTGGGCCTT
CTACTCCTGCGTAATCATTGCCTCCGGTTTCGGGTGCGTTTGGAATCTTT
ACCGGGGTGTCGATGTCCTCGAGAATGCGGCGGACACCTCGCTGACCCGC
GGCATCGACATGTACTACTCGTGTCCCGAGTGGAAACTCCTGTGGGACGG
ACTGCAGTGGCACAAGGAGTGCTGCGGGGTGCATGGCTACAAGGACTGGA
TGAACGCGGAGTGGATGCCACGGCGGGAGAATAACTGCACGTCGATGGTC
CTGGCACCCTTCGCCTGCTGCAAGCGCTCCTGCGACAGCTGCTTTAACAA
TTTCCTGCCCAGTGAGGGGCAGTCCATCGGTGGCAATAGCCGGCAGCCTT
TTCCCGCTCTCACCGTGGACTCAATCAATGCGAACGGATGCTTGCCTGCG
TTCGTTAGTGCGGTGTGGAACTGCTTTTACATCCTGATGGCGTTATGGGT
CC
BO14624.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14936-PA | 981 | Tsp33B-RA | 1..736 | 17..752 | 3680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp33B-RA | 1111 | CG14936-RA | 63..798 | 17..752 | 3680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11791568..11792303 | 752..17 | 3680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 07:39:56 has no hits.
BO14624.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:12 Download gff for
BO14624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14936-PA | 1..736 | 17..752 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:10 Download gff for
BO14624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14936-PA | 1..736 | 17..752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:44:26 Download gff for
BO14624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp33B-RA | 63..798 | 17..752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:14:09 Download gff for
BO14624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp33B-RA | 63..798 | 17..752 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:14:09 Download gff for
BO14624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11791568..11792303 | 17..752 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:44:26 Download gff for
BO14624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11791568..11792303 | 17..752 | 100 | | Minus |
BO14624.complete Sequence
1012 bp (1012 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633202
> BO14624.complete
GAAGTTATCAGTCGACATGCGCCAGCCCTTCCGCCGAGCCTCCGTCTACC
TCCACCTGCTGTTAATAACCGAGGCCGTGATCGGACTGCTGATCCTGGTG
GTGACCGCCTACTACCACACCGTGCTCACCGGCTATCTATCGGATATTGA
GTGCCGCCTGGTCTACGGCTATCTGTTTGGGATCTACGTGTTTGGCGCCC
AGGTGGTGGTGACCTTTCTCTGCAGCATTGCCATGTGGCGGCGAATTTGG
CGGCGTCGCTGCACGCCGAACATTCGCCTCTTGCTATCCGTGTGGGCCTT
CTACTCCTGCGTAATCATTGCCTCCGGTTTCGGGTGCGTTTGGAATCTTT
ACCGGGGTGTCGATGTCCTCGAGAATGCGGCGGACACCTCGCTGACCCGC
GGCATCGACATGTACTACTCGTGTCCCGAGTGGAAACTCCTGTGGGACGG
ACTGCAGTGGCACAAGGAGTGCTGCGGGGTGCATGGCTACAAGGACTGGA
TGAACGCGGAGTGGATGCCACGGCGGGAGAATAACTGCACGTCGATGGTC
CTGGCACCCTTCGCCTGCTGCAAGCGCTCCTGCGACAGCTGCTTTAACAA
TTTCCTGCCCAGTGAGGGGCAGTCCATCGGTGGCAATAGCCGGCAGCCTT
TTCCCGCTCTCACCGTGGACTCAATCAATGCGAACGGATGCTTGCCTGCG
TTCGTTAGTGCGGTGTGGAACTGCTTTTACATCCTGATGGCGTTATGGGT
CCTGGCCCTTAAGTTTCTGATCGTGCTTTGTTGTATGACCAAGTTCATAG
TTCACCGGCAGAACGAGGGCGATGGCTGCGATAATGTGGGGCTCACGGAC
GATGATGGCCATCCCTTGGTCGTGGTGAAATATCCGTGCAACGTGCGCTG
TGTGACAATTGCCGAGGATGATCTGGTATCCGACAACGTTCCCGATATTA
ACTACTGCAATTGCACCGAAATGGACGACGAACCGTGTGGATACGCAAGC
TTTCTAGACCAT
BO14624.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:23:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp33B-RA | 981 | CG14936-PA | 1..978 | 17..994 | 4830 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:23:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp33B-RA | 1111 | CG14936-RA | 63..1040 | 17..994 | 4830 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:23:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11791551..11792303 | 769..17 | 3765 | 100 | Minus |
2L | 23513712 | 2L | 11791096..11791213 | 994..877 | 560 | 98.3 | Minus |
2L | 23513712 | 2L | 11791268..11791376 | 877..769 | 515 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:23:06 has no hits.
BO14624.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:12 Download gff for
BO14624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp33B-RA | 1..981 | 17..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:09 Download gff for
BO14624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp33B-RA | 63..1047 | 17..1002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:56:18 Download gff for
BO14624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp33B-RA | 63..1040 | 17..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:12 Download gff for
BO14624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp33B-RA | 63..1047 | 17..1002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:25 Download gff for
BO14624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp33B-RA | 63..1040 | 17..996 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:25 Download gff for
BO14624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11791094..11791212 | 878..996 | 96 | <- | Minus |
2L | 11791268..11791375 | 770..877 | 98 | <- | Minus |
2L | 11791551..11792303 | 17..769 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:56:18 Download gff for
BO14624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11791094..11791212 | 878..996 | 96 | <- | Minus |
arm_2L | 11791268..11791375 | 770..877 | 98 | <- | Minus |
arm_2L | 11791551..11792303 | 17..769 | 100 | | Minus |
BO14624.pep Sequence
Translation from 16 to 1012
> BO14624.pep
MRQPFRRASVYLHLLLITEAVIGLLILVVTAYYHTVLTGYLSDIECRLVY
GYLFGIYVFGAQVVVTFLCSIAMWRRIWRRRCTPNIRLLLSVWAFYSCVI
IASGFGCVWNLYRGVDVLENAADTSLTRGIDMYYSCPEWKLLWDGLQWHK
ECCGVHGYKDWMNAEWMPRRENNCTSMVLAPFACCKRSCDSCFNNFLPSE
GQSIGGNSRQPFPALTVDSINANGCLPAFVSAVWNCFYILMALWVLALKF
LIVLCCMTKFIVHRQNEGDGCDNVGLTDDDGHPLVVVKYPCNVRCVTIAE
DDLVSDNVPDINYCNCTEMDDEPCGYASFLDH
BO14624.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp33B-PA | 326 | CG14936-PA | 1..326 | 1..326 | 1817 | 100 | Plus |