Clone Sequence Records
BO14625.5prime Sequence
395 bp (395 high quality bases) assembled on 2006-06-16
> BO14625.5prime
GAAGTTATCAGTCGACATGCCGGCGGACATAGTGACCACGGAGCAGCTGC
GCTACCAGCTCGCCTTCAGTCATGCCATGGAAAGGACGACGAGGCACTGG
CAGGAGACTTTCGCGTGGTACCCTAAGATGCAGTGCTGCCATTATCAGCG
GATTGACCAGATCTATCTGACGAGTCGCCAGCGGTACGGCGACGGCCACT
TCCTCAAGTACGCCAACCGCAGGCGCCTGGCAAAGAAGTTCGTGGTTACC
GCCCAGGAGGTTGCGGAAGGTTTGGAGGATCTGAAGATGCTGGAGCAAGA
CGGCATTACGGGCCTCAAAGTTGCGGTCACCGAGAACGGGGAGTACGGCC
GAATGAAGCCCTCCAAGCTGTACATGTGCGCAAGCTTTCTAGACC
BO14625.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3611-PA | 366 | CG3611-RA | 1..363 | 17..379 | 1790 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3611-RB | 1126 | CG3611-RB | 253..615 | 17..379 | 1800 | 99.7 | Plus |
CG3611-RC | 1919 | CG3611-RC | 253..615 | 17..379 | 1800 | 99.7 | Plus |
CG3611-RA | 765 | CG3611-RA | 313..675 | 17..379 | 1800 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:03:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24799110..24799472 | 17..379 | 1800 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:03:11 has no hits.
BO14625.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:14 Download gff for
BO14625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3611-PA | 1..366 | 17..380 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:12 Download gff for
BO14625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3611-PA | 1..366 | 17..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:53:56 Download gff for
BO14625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3611-RA | 313..675 | 17..379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:24 Download gff for
BO14625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3611-RA | 313..675 | 17..379 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:24 Download gff for
BO14625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24799110..24799472 | 17..379 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:53:56 Download gff for
BO14625.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20686633..20686995 | 17..379 | 99 | | Plus |
BO14625.3prime Sequence
395 bp (395 high quality bases) assembled on 2006-06-16
> BO14625.3prime
ATGGTCTAGAAAGCTTGCGCACATGTACAGCTTGGAGGGCTTCATTCGGC
CGTACTCCCCGTTCTCGGTGACCGCAACTTTGAGGCCCGTAATGCCGTCT
TGCTCCAGCATCTTCAGATCCTCCAAACCTTCCGCAACCTCCTGGGCGGT
AACCACGAACTTCTTTGCCAGGCGCCTGCGGTTGGCGTACTTGAGGAAGT
GGCCGTCGCCGTACCGCTGGCGACTCGTCAGATAGATCTGGTCAATCCGC
TGATAATGGCAGCACTGCATCTTAGGGTACCACGCGAAAGTCTCCTGCCA
GTGCCTCGTCGTCCTTTCCATGGCATGACTGAAGGCGAGCTGGTAGCGCA
GCTGCTCCGTGGTCACTATGTCCGCCGGCATGTCGACTGATAACT
BO14625.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3611-PA | 366 | CG3611-RA | 1..363 | 381..19 | 1790 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3611-RB | 1126 | CG3611-RB | 253..615 | 381..19 | 1800 | 99.7 | Minus |
CG3611-RC | 1919 | CG3611-RC | 253..615 | 381..19 | 1800 | 99.7 | Minus |
CG3611-RA | 765 | CG3611-RA | 313..675 | 381..19 | 1800 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24799110..24799472 | 381..19 | 1800 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:55:38 has no hits.
BO14625.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:13 Download gff for
BO14625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3611-PA | 1..366 | 18..381 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:11 Download gff for
BO14625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3611-PA | 1..366 | 18..381 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:06:04 Download gff for
BO14625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3611-RA | 313..675 | 19..381 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:33:08 Download gff for
BO14625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3611-RA | 313..675 | 19..381 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:33:08 Download gff for
BO14625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24799110..24799472 | 19..381 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:06:04 Download gff for
BO14625.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20686633..20686995 | 19..381 | 99 | | Minus |
BO14625.complete Sequence
397 bp (397 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633203
> BO14625.complete
GAAGTTATCAGTCGACATGCCGGCGGACATAGTGACCACGGAGCAGCTGC
GCTACCAGCTCGCCTTCAGTCATGCCATGGAAAGGACGACGAGGCACTGG
CAGGAGACTTTCGCGTGGTACCCTAAGATGCAGTGCTGCCATTATCAGCG
GATTGACCAGATCTATCTGACGAGTCGCCAGCGGTACGGCGACGGCCACT
TCCTCAAGTACGCCAACCGCAGGCGCCTGGCAAAGAAGTTCGTGGTTACC
GCCCAGGAGGTTGCGGAAGGTTTGGAGGATCTGAAGATGCTGGAGCAAGA
CGGCATTACGGGCCTCAAAGTTGCGGTCACCGAGAACGGGGAGTACGGCC
GAATGAAGCCCTCCAAGCTGTACATGTGCGCAAGCTTTCTAGACCAT
BO14625.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3611-RB | 366 | CG3611-PB | 1..363 | 17..379 | 1800 | 99.7 | Plus |
CG3611-RC | 366 | CG3611-PC | 1..363 | 17..379 | 1800 | 99.7 | Plus |
CG3611-RA | 366 | CG3611-PA | 1..363 | 17..379 | 1800 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3611-RB | 1126 | CG3611-RB | 253..615 | 17..379 | 1800 | 99.7 | Plus |
CG3611-RC | 1919 | CG3611-RC | 253..615 | 17..379 | 1800 | 99.7 | Plus |
CG3611-RA | 765 | CG3611-RA | 313..675 | 17..379 | 1800 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24799110..24799472 | 17..379 | 1800 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:44:06 has no hits.
BO14625.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:15 Download gff for
BO14625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3611-RA | 1..366 | 17..380 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:11 Download gff for
BO14625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3611-RA | 313..675 | 17..379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:19 Download gff for
BO14625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3611-RA | 313..675 | 17..381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:15 Download gff for
BO14625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3611-RA | 313..675 | 17..379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:38 Download gff for
BO14625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3611-RA | 313..675 | 17..381 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:38 Download gff for
BO14625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24799110..24799472 | 17..381 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:19 Download gff for
BO14625.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20686633..20686995 | 17..381 | 99 | | Plus |
BO14625.pep Sequence
Translation from 16 to 397
> BO14625.pep
MPADIVTTEQLRYQLAFSHAMERTTRHWQETFAWYPKMQCCHYQRIDQIY
LTSRQRYGDGHFLKYANRRRLAKKFVVTAQEVAEGLEDLKMLEQDGITGL
KVAVTENGEYGRMKPSKLYMCASFLDH
BO14625.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3611-PB | 121 | CG3611-PB | 1..121 | 1..121 | 649 | 100 | Plus |
CG3611-PC | 121 | CG3611-PC | 1..121 | 1..121 | 649 | 100 | Plus |
CG3611-PA | 121 | CG3611-PA | 1..121 | 1..121 | 649 | 100 | Plus |
CG34169-PA | 124 | CG34169-PA | 5..123 | 3..121 | 171 | 31.5 | Plus |
CG34106-PB | 122 | CG34106-PB | 5..118 | 5..118 | 164 | 29.8 | Plus |