Clone BO14625 Report

Search the DGRC for BO14625

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:146
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG3611-RA
Protein status:BO14625.pep: validated full length
Sequenced Size:397

Clone Sequence Records

BO14625.5prime Sequence

395 bp (395 high quality bases) assembled on 2006-06-16

> BO14625.5prime
GAAGTTATCAGTCGACATGCCGGCGGACATAGTGACCACGGAGCAGCTGC
GCTACCAGCTCGCCTTCAGTCATGCCATGGAAAGGACGACGAGGCACTGG
CAGGAGACTTTCGCGTGGTACCCTAAGATGCAGTGCTGCCATTATCAGCG
GATTGACCAGATCTATCTGACGAGTCGCCAGCGGTACGGCGACGGCCACT
TCCTCAAGTACGCCAACCGCAGGCGCCTGGCAAAGAAGTTCGTGGTTACC
GCCCAGGAGGTTGCGGAAGGTTTGGAGGATCTGAAGATGCTGGAGCAAGA
CGGCATTACGGGCCTCAAAGTTGCGGTCACCGAGAACGGGGAGTACGGCC
GAATGAAGCCCTCCAAGCTGTACATGTGCGCAAGCTTTCTAGACC

BO14625.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3611-PA 366 CG3611-RA 1..363 17..379 1790 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3611-RB 1126 CG3611-RB 253..615 17..379 1800 99.7 Plus
CG3611-RC 1919 CG3611-RC 253..615 17..379 1800 99.7 Plus
CG3611-RA 765 CG3611-RA 313..675 17..379 1800 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24799110..24799472 17..379 1800 99.7 Plus
Blast to na_te.dros performed on 2015-02-12 05:03:11 has no hits.

BO14625.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:14 Download gff for BO14625.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3611-PA 1..366 17..380 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:12 Download gff for BO14625.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3611-PA 1..366 17..380 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:53:56 Download gff for BO14625.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3611-RA 313..675 17..379 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:24 Download gff for BO14625.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3611-RA 313..675 17..379 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:24 Download gff for BO14625.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24799110..24799472 17..379 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:53:56 Download gff for BO14625.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20686633..20686995 17..379 99   Plus

BO14625.3prime Sequence

395 bp (395 high quality bases) assembled on 2006-06-16

> BO14625.3prime
ATGGTCTAGAAAGCTTGCGCACATGTACAGCTTGGAGGGCTTCATTCGGC
CGTACTCCCCGTTCTCGGTGACCGCAACTTTGAGGCCCGTAATGCCGTCT
TGCTCCAGCATCTTCAGATCCTCCAAACCTTCCGCAACCTCCTGGGCGGT
AACCACGAACTTCTTTGCCAGGCGCCTGCGGTTGGCGTACTTGAGGAAGT
GGCCGTCGCCGTACCGCTGGCGACTCGTCAGATAGATCTGGTCAATCCGC
TGATAATGGCAGCACTGCATCTTAGGGTACCACGCGAAAGTCTCCTGCCA
GTGCCTCGTCGTCCTTTCCATGGCATGACTGAAGGCGAGCTGGTAGCGCA
GCTGCTCCGTGGTCACTATGTCCGCCGGCATGTCGACTGATAACT

BO14625.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3611-PA 366 CG3611-RA 1..363 381..19 1790 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3611-RB 1126 CG3611-RB 253..615 381..19 1800 99.7 Minus
CG3611-RC 1919 CG3611-RC 253..615 381..19 1800 99.7 Minus
CG3611-RA 765 CG3611-RA 313..675 381..19 1800 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24799110..24799472 381..19 1800 99.7 Minus
Blast to na_te.dros performed on 2015-02-11 18:55:38 has no hits.

BO14625.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:13 Download gff for BO14625.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3611-PA 1..366 18..381 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:11 Download gff for BO14625.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3611-PA 1..366 18..381 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 20:06:04 Download gff for BO14625.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3611-RA 313..675 19..381 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:33:08 Download gff for BO14625.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3611-RA 313..675 19..381 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:33:08 Download gff for BO14625.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24799110..24799472 19..381 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 20:06:04 Download gff for BO14625.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20686633..20686995 19..381 99   Minus

BO14625.complete Sequence

397 bp (397 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633203

> BO14625.complete
GAAGTTATCAGTCGACATGCCGGCGGACATAGTGACCACGGAGCAGCTGC
GCTACCAGCTCGCCTTCAGTCATGCCATGGAAAGGACGACGAGGCACTGG
CAGGAGACTTTCGCGTGGTACCCTAAGATGCAGTGCTGCCATTATCAGCG
GATTGACCAGATCTATCTGACGAGTCGCCAGCGGTACGGCGACGGCCACT
TCCTCAAGTACGCCAACCGCAGGCGCCTGGCAAAGAAGTTCGTGGTTACC
GCCCAGGAGGTTGCGGAAGGTTTGGAGGATCTGAAGATGCTGGAGCAAGA
CGGCATTACGGGCCTCAAAGTTGCGGTCACCGAGAACGGGGAGTACGGCC
GAATGAAGCCCTCCAAGCTGTACATGTGCGCAAGCTTTCTAGACCAT

BO14625.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3611-RB 366 CG3611-PB 1..363 17..379 1800 99.7 Plus
CG3611-RC 366 CG3611-PC 1..363 17..379 1800 99.7 Plus
CG3611-RA 366 CG3611-PA 1..363 17..379 1800 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3611-RB 1126 CG3611-RB 253..615 17..379 1800 99.7 Plus
CG3611-RC 1919 CG3611-RC 253..615 17..379 1800 99.7 Plus
CG3611-RA 765 CG3611-RA 313..675 17..379 1800 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24799110..24799472 17..379 1800 99.7 Plus
Blast to na_te.dros performed on 2014-11-27 14:44:06 has no hits.

BO14625.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:15 Download gff for BO14625.complete
Subject Subject Range Query Range Percent Splice Strand
CG3611-RA 1..366 17..380 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:11 Download gff for BO14625.complete
Subject Subject Range Query Range Percent Splice Strand
CG3611-RA 313..675 17..379 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:19 Download gff for BO14625.complete
Subject Subject Range Query Range Percent Splice Strand
CG3611-RA 313..675 17..381 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:15 Download gff for BO14625.complete
Subject Subject Range Query Range Percent Splice Strand
CG3611-RA 313..675 17..379 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:38 Download gff for BO14625.complete
Subject Subject Range Query Range Percent Splice Strand
CG3611-RA 313..675 17..381 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:38 Download gff for BO14625.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24799110..24799472 17..381 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:19 Download gff for BO14625.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20686633..20686995 17..381 99   Plus

BO14625.pep Sequence

Translation from 16 to 397

> BO14625.pep
MPADIVTTEQLRYQLAFSHAMERTTRHWQETFAWYPKMQCCHYQRIDQIY
LTSRQRYGDGHFLKYANRRRLAKKFVVTAQEVAEGLEDLKMLEQDGITGL
KVAVTENGEYGRMKPSKLYMCASFLDH

BO14625.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3611-PB 121 CG3611-PB 1..121 1..121 649 100 Plus
CG3611-PC 121 CG3611-PC 1..121 1..121 649 100 Plus
CG3611-PA 121 CG3611-PA 1..121 1..121 649 100 Plus
CG34169-PA 124 CG34169-PA 5..123 3..121 171 31.5 Plus
CG34106-PB 122 CG34106-PB 5..118 5..118 164 29.8 Plus