Clone Sequence Records
BO14628.3prime Sequence
725 bp (655 high quality bases) assembled on 2006-06-02
> BO14628.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGGCGGCGAGCAGCTCGTCCAGGTGCG
CCTCCACCTCCTTATGTGCCTTGACGCTATGTTCGGTGCGAGAGGCGGCC
TCGTGGACGAAAAATCCGCGCAGTAGTTCTGCTTTTGTTTGAACAAGTTG
CGCCTGCGCCTGTTGCAATTTTAGTTCGTTTGCCAACTGCGGCCCCAATT
TCAATTCGGCGGTCTCCTTGAGAAGCGTGCACTTACGAGTGAGAAGCGCA
ACCAATTTCTCCAGACCGCTGCGATGCTCCTCCTCCAGGCGCAGAATCTC
CTTTTGGTCGCAGCTTAAGTCCGCCTCCTGGCCAAAGGCGTCCGGGAACT
CCTCGCGTATCCTGTCGCACAATTCGGCAATGGGTTGCAGAGTTGTGCGT
AATTGAGCGGACAATTTGGTACGCACCGTCTTGCGATCCGTGTAATTCAA
GGGCGGAAAACTGCTGCCGCTCGGTAGACCAAGCACCTGCTCCTGACCAG
CTCCCTCCATCTCGCCGAGTCGCGCATAACTTCCAATGGAAACCAATTTG
AGGGCTCTTTTGATTTCATCACTCGGATTTGGGCCCACATCCAGGCGTCT
TAGCTCGTCCAGCACTAGCTTCAGCTTGAGCACCTTCTTCAGCTCCGCAT
CGCGAGCCAGCCGCAAATCTTCCGAGTGTTCGGGCAAGAGCGTGGCGGAT
GGATCATCCATGTCGACTGATAACT
BO14628.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16969-PA | 696 | CG16969-RA | 1..693 | 711..19 | 3465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt2-RB | 987 | CG16969-RB | 89..781 | 711..19 | 3465 | 100 | Minus |
| dgt2-RA | 842 | CG16969-RA | 89..781 | 711..19 | 3465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11990312..11990773 | 480..19 | 2310 | 100 | Minus |
| 2L | 23513712 | 2L | 11990024..11990257 | 711..478 | 1170 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:02:42 has no hits.
BO14628.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:16 Download gff for
BO14628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16969-PA | 1..696 | 18..711 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:14 Download gff for
BO14628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16969-PA | 1..696 | 18..711 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:49:09 Download gff for
BO14628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 82..788 | 10..719 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:41:02 Download gff for
BO14628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 82..788 | 10..719 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:41:02 Download gff for
BO14628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11990017..11990255 | 480..719 | 98 | -> | Minus |
| 2L | 11990313..11990780 | 10..479 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:49:09 Download gff for
BO14628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11990017..11990255 | 480..719 | 98 | -> | Minus |
| arm_2L | 11990313..11990780 | 10..479 | 99 | | Minus |
BO14628.5prime Sequence
725 bp (663 high quality bases) assembled on 2006-06-16
> BO14628.5prime
GAAGTTATCAGTCGACATGGATGATCCATCCGCCACGCTCTTGCCCGAAC
ACTCGGAAGATTTGCGGCTGGCTCGCGATGCGGAGCTGAAGAAGGTGCTC
AAGCTGAAGCTAGTGCTGGACGAGCTAAGACGCCTGGATGTGGGCCCAAA
TCCGAGTGATGAAATCAAAAGAGCCCTCAAATTGGTTTCCATTGGAAGTT
ATGCGCGACTCGGCGAGATGGAGGGAGCTGGTCAGGAGCAGGTGCTTGGT
CTACCGAGCGGCAGCAGTTTTCCGCCCTTGAATTACACGGATCGCAAGAC
GGTGCGTACCAAATTGTCCGCTCAATTACGCACAACTCTGCAACCCATTG
CCGAATTGTGCGACAGGATACGCGAGGAGTTCCCGGACGCCTTTGGCCAG
GAGGCGGACTTAAGCTGCGACCAAAAGGAGATTCTGCGCCTGGAGGAGGA
GCATCGCAGCGGTCTGGAGAAATTGGTTGCGCTTCTCACTCGTAAGTGCA
CGCTTCTCAAGGAGACCGCCGAATTGAAATTGGGGCCGCAGTTGGCAAAC
GAACTAAAATTGCAACAGGCGCAGGCGCAACTTGTTCAAACAAAAGCAGA
ACTACTGCGCGGATTTTTCGTCCACGAGGCCGCCTCTCGCACCGAACATA
GCGTCAAGGCACATAAGGAGGTGGAGGCGCACCTGGACGAGCTGCTCGCC
GCCAAGAAGGCAAGCTTTCTAGACC
BO14628.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16969-PA | 696 | CG16969-RA | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:46:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt2-RB | 987 | CG16969-RB | 89..781 | 17..709 | 3465 | 100 | Plus |
| dgt2-RA | 842 | CG16969-RA | 89..781 | 17..709 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:46:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11990312..11990773 | 248..709 | 2310 | 100 | Plus |
| 2L | 23513712 | 2L | 11990024..11990257 | 17..250 | 1170 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:46:40 has no hits.
BO14628.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:17 Download gff for
BO14628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16969-PA | 1..696 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:16 Download gff for
BO14628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16969-PA | 1..696 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:50:22 Download gff for
BO14628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 82..788 | 9..718 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:23 Download gff for
BO14628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 82..788 | 9..718 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:23 Download gff for
BO14628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11990017..11990255 | 9..248 | 98 | -> | Plus |
| 2L | 11990313..11990780 | 249..718 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:50:22 Download gff for
BO14628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11990017..11990255 | 9..248 | 98 | -> | Plus |
| arm_2L | 11990313..11990780 | 249..718 | 99 | | Plus |
BO14628.complete Sequence
727 bp (727 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633204
> BO14628.complete
GAAGTTATCAGTCGACATGGATGATCCATCCGCCACGCTCTTGCCCGAAC
ACTCGGAAGATTTGCGGCTGGCTCGCGATGCGGAGCTGAAGAAGGTGCTC
AAGCTGAAGCTAGTGCTGGACGAGCTAAGACGCCTGGATGTGGGCCCAAA
TCCGAGTGATGAAATCAAAAGAGCCCTCAAATTGGTTTCCATTGGAAGTT
ATGCGCGACTCGGCGAGATGGAGGGAGCTGGTCAGGAGCAGGTGCTTGGT
CTACCGAGCGGCAGCAGTTTTCCGCCCTTGAATTACACGGATCGCAAGAC
GGTGCGTACCAAATTGTCCGCTCAATTACGCACAACTCTGCAACCCATTG
CCGAATTGTGCGACAGGATACGCGAGGAGTTCCCGGACGCCTTTGGCCAG
GAGGCGGACTTAAGCTGCGACCAAAAGGAGATTCTGCGCCTGGAGGAGGA
GCATCGCAGCGGTCTGGAGAAATTGGTTGCGCTTCTCACTCGTAAGTGCA
CGCTTCTCAAGGAGACCGCCGAATTGAAATTGGGGCCGCAGTTGGCAAAC
GAACTAAAATTGCAACAGGCGCAGGCGCAACTTGTTCAAACAAAAGCAGA
ACTACTGCGCGGATTTTTCGTCCACGAGGCCGCCTCTCGCACCGAACATA
GCGTCAAGGCACATAAGGAGGTGGAGGCGCACCTGGACGAGCTGCTCGCC
GCCAAGAAGGCAAGCTTTCTAGACCAT
BO14628.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt2-RB | 696 | CG16969-PB | 1..693 | 17..709 | 3465 | 100 | Plus |
| dgt2-RA | 696 | CG16969-PA | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt2-RB | 987 | CG16969-RB | 89..781 | 17..709 | 3465 | 100 | Plus |
| dgt2-RA | 842 | CG16969-RA | 89..781 | 17..709 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11990312..11990773 | 248..709 | 2310 | 100 | Plus |
| 2L | 23513712 | 2L | 11990024..11990257 | 17..250 | 1170 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:21:17 has no hits.
BO14628.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:43 Download gff for
BO14628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 1..696 | 17..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:35 Download gff for
BO14628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 54..760 | 9..718 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:18 Download gff for
BO14628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 89..781 | 17..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:45 Download gff for
BO14628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 54..760 | 9..718 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:48 Download gff for
BO14628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 89..781 | 17..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:48 Download gff for
BO14628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11990024..11990255 | 17..248 | 100 | -> | Plus |
| 2L | 11990313..11990773 | 249..711 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:18 Download gff for
BO14628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11990024..11990255 | 17..248 | 100 | -> | Plus |
| arm_2L | 11990313..11990773 | 249..711 | 99 | | Plus |
BO14628.pep Sequence
Translation from 16 to 727
> BO14628.pep
MDDPSATLLPEHSEDLRLARDAELKKVLKLKLVLDELRRLDVGPNPSDEI
KRALKLVSIGSYARLGEMEGAGQEQVLGLPSGSSFPPLNYTDRKTVRTKL
SAQLRTTLQPIAELCDRIREEFPDAFGQEADLSCDQKEILRLEEEHRSGL
EKLVALLTRKCTLLKETAELKLGPQLANELKLQQAQAQLVQTKAELLRGF
FVHEAASRTEHSVKAHKEVEAHLDELLAAKKASFLDH
BO14628.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt2-PB | 231 | CG16969-PB | 1..231 | 1..231 | 1149 | 100 | Plus |
| dgt2-PA | 231 | CG16969-PA | 1..231 | 1..231 | 1149 | 100 | Plus |
