BO14631.complete Sequence
1264 bp (1264 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633205
> BO14631.complete
GAAGTTATCAGTCGACATGGCCGTGCCCTTTTATTTGCCCGAGGGCGGCG
CCGATGACGTAGCGTCGAGTTCATCGGGAGCCTCGGGCAACTCCTCCCCC
CACAACCACCCACTTCCCTCGAGCGCATCCTCGTCCGTCTCCTCCTCGGG
CGTGTCCTCGGCCTCCGCCTCCTCGGCCTCATCTTCGTCCTCCGCATCGT
CGGACGGCGCCAGCAGCGCCGCCTCGCAATCGCCGAACACCACCACCTCG
TCGGCCACGCAGACGCCGATGCAGTCTCCACTGCCCACCGACCAAGTGCT
ATACGCCCTCTACGAGTGGGTCAGGATGTACCAGAGCCAGCAGAGTGCCC
CGCAAATCTTCCAGTATCCGCCGCCAAGCCCCTCTTGCAATTTCACGGGC
GGCGATGTGTTCTTTCCGCACGGCCATCCGAATCCGAACTCGAATCCCCA
TCCGCGCACCCCCCGAACCAGCGTGAGCTTCTCCTCCGGCGAGGAGTACA
ACTTCTTCCGGCAGCAGCAGCCGCAACCACATCCGTCATATCCGGCGCCA
TCAACACCGCAGCCAATGCCACCGCAGTCAGCGCCGCCGATGCACTGCAG
CCACAGCTACCCGCAGCAGTCGGCGCACATGATGCCACACCATTCCGCTC
CCTTCGGAATGGGCGGTACCTACTACGCGGGCTACACGCCGCCACCCACT
CCGAACACGGCCAGTGCGGGCACCTCCAGCTCATCGGCGGCCTTCGGCTG
GCACGGCCACCCCCACAGCCCCTTCACGTCGACCTCCACGCCGTTATCGG
CGCCAGTGGCGCCCAAGATGCGCCTGCAGCGCAGCCAGTCGGATGCGGCC
AGACGCAAGCGATTGACCTCGACGGGCGAGGATGAGCGCGAGTACCAGAG
CGATCATGAGGCCACTTGGGACGAGTTTGGCGATCGCTACGACAACTTTA
CGGCCGGCCGGGAGCGTCTGCAGGAGTTCAATGGACGCATCCCGCCCCGG
AAGAAGAAGAGCTCCAATAGCCACTCGAGCAGCAGCAATAATCCAGTCTG
CCATACCGATAGCCAGCCCGGTGGTACATCCCAAGCGGAGAGCGGTGCCA
TCCATGGCCACATCAGTCAGCAGCGACAGGTGGAGCGAGAACGACAAAAG
GCGAAGGCCGAGAAGAAGAAACCACAGAGCTTCACTTGGCCAACTGTTGT
GACCGTTTTCGTTTTGGCCATGGGCTGTGGCTTCTTTGCGGCGCGAGCAA
GCTTTCTAGACCAT
BO14631.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hid-RB | 1233 | CG5123-PB | 1..1230 | 17..1246 | 6150 | 100 | Plus |
| hid-RA | 1233 | CG5123-PA | 1..1230 | 17..1246 | 6150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:15:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hid-RB | 2190 | CG5123-RB | 520..1749 | 17..1246 | 6150 | 100 | Plus |
| hid-RA | 4018 | CG5123-RA | 520..1749 | 17..1246 | 6150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18173047..18173555 | 855..347 | 2545 | 100 | Minus |
| 3L | 28110227 | 3L | 18184792..18185122 | 347..17 | 1655 | 100 | Minus |
| 3L | 28110227 | 3L | 18172060..18172373 | 1168..855 | 1570 | 100 | Minus |
| 3L | 28110227 | 3L | 18170014..18170093 | 1246..1167 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:15:14 has no hits.
BO14631.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:16 Download gff for
BO14631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| W-RA | 1..1233 | 17..1249 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:13 Download gff for
BO14631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| W-RA | 516..1745 | 17..1248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:43 Download gff for
BO14631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| W-RA | 520..1749 | 17..1248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:17 Download gff for
BO14631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| W-RA | 510..1752 | 9..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:05 Download gff for
BO14631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hid-RA | 520..1749 | 17..1248 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:05 Download gff for
BO14631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18170011..18170091 | 1169..1248 | 97 | <- | Minus |
| 3L | 18172060..18172372 | 856..1168 | 100 | <- | Minus |
| 3L | 18173047..18173554 | 348..855 | 100 | <- | Minus |
| 3L | 18184792..18185122 | 17..347 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:43 Download gff for
BO14631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18165160..18165472 | 856..1168 | 100 | <- | Minus |
| arm_3L | 18163111..18163191 | 1169..1248 | 97 | <- | Minus |
| arm_3L | 18166147..18166654 | 348..855 | 100 | <- | Minus |
| arm_3L | 18177892..18178222 | 17..347 | 100 | | Minus |
BO14631.pep Sequence
Translation from 16 to 1264
> BO14631.pep
MAVPFYLPEGGADDVASSSSGASGNSSPHNHPLPSSASSSVSSSGVSSAS
ASSASSSSSASSDGASSAASQSPNTTTSSATQTPMQSPLPTDQVLYALYE
WVRMYQSQQSAPQIFQYPPPSPSCNFTGGDVFFPHGHPNPNSNPHPRTPR
TSVSFSSGEEYNFFRQQQPQPHPSYPAPSTPQPMPPQSAPPMHCSHSYPQ
QSAHMMPHHSAPFGMGGTYYAGYTPPPTPNTASAGTSSSSAAFGWHGHPH
SPFTSTSTPLSAPVAPKMRLQRSQSDAARRKRLTSTGEDEREYQSDHEAT
WDEFGDRYDNFTAGRERLQEFNGRIPPRKKKSSNSHSSSSNNPVCHTDSQ
PGGTSQAESGAIHGHISQQRQVERERQKAKAEKKKPQSFTWPTVVTVFVL
AMGCGFFAARASFLDH
BO14631.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hid-PB | 410 | CG5123-PB | 1..410 | 1..410 | 2201 | 100 | Plus |
| hid-PA | 410 | CG5123-PA | 1..410 | 1..410 | 2201 | 100 | Plus |
| Muc91C-PB | 949 | CG7709-PB | 586..909 | 16..357 | 161 | 26.3 | Plus |
| Muc91C-PA | 950 | CG7709-PA | 587..910 | 16..357 | 161 | 26.3 | Plus |
