Clone Sequence Records
BO14634.3prime Sequence
848 bp (781 high quality bases) assembled on 2006-06-16
> BO14634.3prime
ATGGTCTAGAAAGCTTGCGATTTTGGCATTTGCCTCGCCGTATTTTTTAC
CCAGCACATAGGGAGTTTTGGTGAGCTCCGAGATGATCCCGCACTTGACC
TGCTCGAAACAAGGTGACGCATCCACATAGACCACTTCTCTCCGCTGGCT
GAGGTAGGAGCTTAGAGCAGGTTCACTTTTCCGGAACTGGGCCATCTGGC
GGTCCACAAAACTGACGTGAGCTTGAGGTCCTGGCGAGTAGCTATTGAGC
AGGATTCTCATGCGAGCCAGACGCTCGTCGATTTGTAGGAATACGAATCG
ATTCGGTGGCACAGTGAAGCCCTCGAAGAGTTCCTCAGCCTCGCACTTAT
TGTTCGGGTAATTGATCAGAATCCAACCCCTGTGAAGGGCGTCCTCCTGG
AGGAGTCTGTTCTCGATGAGATTGCCCACTGCCTGCGAACGTTTGTAGAC
ACAATCCTTTTCAATGGCTTCCTGCAGCAATCTGGACGGCTCATCCTGGT
CCTGTTTGTTGATGCTATGATAGGCCAGCACATCGGCATCCAATATTAGC
AGATTCCAGCGCTGGGCTAGCACATATGCCAAGGACCTTCGCCCAGATCC
TGGCTTGCCGTGCAGCACTATTCGGTGGTAGAAGCTCCTGGGCAGCTGGT
AGAAATCACCCCTTACTCCCCGATGAAAGGCGTCCATCGATTTGGTGTAT
ATCTCTACGCCGATCCTGGTTATGTTCTCGCCCATCCATCTTCGCACATC
TGTCACTCCATCCGCCACGGAAATCTCGGCCAGGAGACGACTCATCACCT
CCATCAGCTTGTGCTTCTCAATGAAGTACATAAATGCGGCACTGTACT
BO14634.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15543-PA | 873 | CG15543-RA | 41..870 | 848..19 | 4125 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15543-RB | 1595 | CG15543-RB | 105..934 | 848..19 | 4135 | 99.9 | Minus |
| CG15543-RA | 1036 | CG15543-RA | 105..934 | 848..19 | 4135 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30742984..30743813 | 848..19 | 4135 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:02:34 has no hits.
BO14634.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:20 Download gff for
BO14634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-PA | 41..873 | 16..848 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:20 Download gff for
BO14634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-PA | 41..873 | 16..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:49:07 Download gff for
BO14634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-RA | 105..941 | 10..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:40:28 Download gff for
BO14634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-RA | 105..941 | 10..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:40:28 Download gff for
BO14634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30742984..30743820 | 10..848 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:49:07 Download gff for
BO14634.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26568706..26569542 | 10..848 | 99 | | Minus |
BO14634.5prime Sequence
864 bp (762 high quality bases) assembled on 2006-06-02
> BO14634.5prime
GAAGTTATCAGTCGACATGTCCTCGCCCACAGATTTCGACCGTTCCATGC
TGGTGGAGTACAGTGCCGCATTTATGTACTACATTGAGAAGCACAAGCTG
ATGGAGGTGATGAGTCGTCTCCTGGCCGAGATTTCCGTGGCGGATGGAGT
GACAGATGTGCGAAGATGGATGGGCGAGAACATAACCAGGATCGGCGTAG
AGATATACACCAAATCGATGGACGCCTTTCATCGGGGAGTAAGGGGTGAT
TTCTACCAGCTGCCCAGGAGCTTCTACCACCGAATAGTGCTGCACGGCAA
GCCAGGATCTGGGCGAAGGTCCTTGGCATATGTGCTAGCCCAGCGCTGGA
ATCTGCTAATATTGGATGCCGATGTGCTGGCCTATCATAGCATCAACAAA
CAGGACCAGGATGAGCCGTCCAGATTGCTGCAGGAAGCCATTGAAAAGGA
TTGTGTCTACAAACGTTCGCAGGCAGTGGGCAATCTCATCGAGAACAGAC
TCCTCCAGGAGGACGCCCTTCACAGGGGTTGGATTCTGATCAATTACCCG
AACAATAAGTGCGAGGCTGAGGAACTCTTCGAGGGCTTCACTGTGCCACC
GAATCGATTCGTATTCCTACAAATCGACGAGCGTCTGGCTCGCATGAGAA
TCCTGCTCAATAGCTACTCGCCAGGACCTCAAGCTCACGTCAGTTTTGTG
GACCGCCAGATGGCCCAGTTCCGGAAAAGTGAACCTGCTCTAAGCTCCTA
CCTCAGCCAGCGGAGAGAAGTGGTCTATGTGGATGCGTCACCTTTGTTCG
AGCAGGTCAAGTGCGGGATCATCTCGGAGCTCACCAAAACTCCCTATGTG
CTGGGTAAAAAATA
BO14634.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15543-PA | 873 | CG15543-RA | 1..848 | 17..864 | 4190 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15543-RB | 1595 | CG15543-RB | 61..912 | 13..864 | 4215 | 99.6 | Plus |
| CG15543-RA | 1036 | CG15543-RA | 61..912 | 13..864 | 4215 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30742940..30743791 | 13..864 | 4215 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:08:34 has no hits.
BO14634.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:21 Download gff for
BO14634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-PA | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:21 Download gff for
BO14634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-PA | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:57:25 Download gff for
BO14634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-RA | 54..911 | 2..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:03:26 Download gff for
BO14634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-RA | 54..911 | 2..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:03:26 Download gff for
BO14634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30742933..30743790 | 2..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:57:25 Download gff for
BO14634.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26568655..26569512 | 2..863 | 99 | | Plus |
BO14634.complete Sequence
904 bp (904 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633206
> BO14634.complete
GAAGTTATCAGTCGACATGTCCTCGCCCACAGATTTCGACCGTTCCATGC
TGGTGGAGTACAGTGCCGCATTTATGTACTACATTGAGAAGCACAAGCTG
ATGGAGGTGATGAGTCGTCTCCTGGCCGAGATTTCCGTGGCGGATGGAGT
GACAGATGTGCGAAGATGGATGGGCGAGAACATAACCAGGATCGGCGTAG
AGATATACACCAAATCGATGGACGCCTTTCATCGGGGAGTAAGGGGTGAT
TTCTACCAGCTGCCCAGGAGCTTCTACCACCGAATAGTGCTGCACGGCAA
GCCAGGATCTGGGCGAAGGTCCTTGGCATATGTGCTAGCCCAGCGCTGGA
ATCTGCTAATATTGGATGCCGATGTGCTGGCCTATCATAGCATCAACAAA
CAGGACCAGGATGAGCCGTCCAGATTGCTGCAGGAAGCCATTGAAAAGGA
TTGTGTCTACAAACGTTCGCAGGCAGTGGGCAATCTCATCGAGAACAGAC
TCCTCCAGGAGGACGCCCTTCACAGGGGTTGGATTCTGATCAATTACCCG
AACAATAAGTGCGAGGCTGAGGAACTCTTCGAGGGCTTCACTGTGCCACC
GAATCGATTCGTATTCCTACAAATCGACGAGCGTCTGGCTCGCATGAGAA
TCCTGCTCAATAGCTACTCGCCAGGACCTCAAGCTCACGTCAGTTTTGTG
GACCGCCAGATGGCCCAGTTCCGGAAAAGTGAACCTGCTCTAAGCTCCTA
CCTCAGCCAGCGGAGAGAAGTGGTCTATGTGGATGCGTCACCTTGTTTCG
AGCAGGTCAAGTGCGGGATCATCTCGGAGCTCACCAAAACTCCCTATGTG
CTGGGTAAAAAATACGGCGAGGCAAATGCCAAAATCGCAAGCTTTCTAGA
CCAT
BO14634.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15543-RB | 873 | CG15543-PB | 1..870 | 17..886 | 4350 | 100 | Plus |
| CG15543-RA | 873 | CG15543-PA | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15543-RB | 1595 | CG15543-RB | 61..934 | 13..886 | 4355 | 99.9 | Plus |
| CG15543-RA | 1036 | CG15543-RA | 61..934 | 13..886 | 4355 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30742940..30743813 | 13..886 | 4355 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:49:03 has no hits.
BO14634.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:17 Download gff for
BO14634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-RA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:15 Download gff for
BO14634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-RA | 33..920 | 2..895 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:28 Download gff for
BO14634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-RA | 65..934 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:18 Download gff for
BO14634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-RA | 33..920 | 2..895 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:13 Download gff for
BO14634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15543-RA | 65..934 | 17..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:13 Download gff for
BO14634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30742944..30743813 | 17..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:28 Download gff for
BO14634.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26568666..26569535 | 17..888 | 99 | | Plus |
BO14634.pep Sequence
Translation from 16 to 904
> BO14634.pep
MSSPTDFDRSMLVEYSAAFMYYIEKHKLMEVMSRLLAEISVADGVTDVRR
WMGENITRIGVEIYTKSMDAFHRGVRGDFYQLPRSFYHRIVLHGKPGSGR
RSLAYVLAQRWNLLILDADVLAYHSINKQDQDEPSRLLQEAIEKDCVYKR
SQAVGNLIENRLLQEDALHRGWILINYPNNKCEAEELFEGFTVPPNRFVF
LQIDERLARMRILLNSYSPGPQAHVSFVDRQMAQFRKSEPALSSYLSQRR
EVVYVDASPCFEQVKCGIISELTKTPYVLGKKYGEANAKIASFLDH
BO14634.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15543-PB | 290 | CG15543-PB | 1..290 | 1..290 | 1504 | 100 | Plus |
| CG15543-PA | 290 | CG15543-PA | 1..290 | 1..290 | 1504 | 100 | Plus |
