Clone Sequence Records
BO14635.3prime Sequence
689 bp (685 high quality bases) assembled on 2006-06-16
> BO14635.3prime
ATGGTCTAGAAAGCTTGCCATAATGGTCTCCTCCTCCAGCATGTACTCCG
TGAGATCGGCTTCGCCCGACAGCATGGTCACCGGCACCCGGTTCATCTGG
GCCACCCGTTGACTGGGCCAGACCATCACATCGCAACAGTTGGTCAACAC
GACCACATTGGTGCTCGGCGTGTTGGTGCACATCAGGTTGCCGGCCTTCT
CCTGGTCGCACTTGTTGAACTTGCGCCGGAAACGGAACTTCACGGGCAAC
GAGTTGCCCATCACGCTCTCTTCATCGAAGTACGGCGGCAGGGATTTGTT
GAAAGCCGGATTTGTGATGGCCGGCTTGGTTAGCTCTTCGAGAACCACGG
AGGTCTTGAGTCGGCGACAGGGATCACAGTAGTCGGAGGCCAATGTGTTC
TCCGGTGTCTTGGTAGCACATGGATCCGGCTTGGGTTCGGGCACATTGGA
TCCCAAACCACTACCATGTGGCCCACTGTCACTGTCACGTTTACCCTTCG
GATTCATGGGATCCTGGCCGCGTAATACGCACTCCTGCAGGAACTCCTCC
TCGATGTCGATCAGTTTCTTGATGGCACAGTCCCGCTTCAGGAAGTTCTT
GATCACGGACAGATTGCGGGGCACGGCGCCGATAACGTCGAAGTCATCGC
TACGGAGCTGGAGGCGGTGCGCCATGTCGACTGATAACT
BO14635.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4286-PA | 660 | CG4286-RA | 1..657 | 675..19 | 3185 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4286-RA | 821 | CG4286-RA | 99..756 | 676..19 | 3230 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21178196..21178538 | 334..676 | 1670 | 99.1 | Plus |
2R | 25286936 | 2R | 21177819..21178135 | 19..335 | 1570 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:37:07 has no hits.
BO14635.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:22 Download gff for
BO14635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4286-PA | 1..660 | 16..675 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:23 Download gff for
BO14635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4286-PA | 1..660 | 16..675 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:41:23 Download gff for
BO14635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4286-RA | 96..756 | 19..682 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:49:33 Download gff for
BO14635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4286-RA | 96..756 | 19..682 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:49:33 Download gff for
BO14635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21177819..21178133 | 19..333 | 99 | <- | Plus |
2R | 21178196..21178541 | 334..682 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:41:23 Download gff for
BO14635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17065324..17065638 | 19..333 | 99 | <- | Plus |
arm_2R | 17065701..17066046 | 334..682 | 98 | | Plus |
BO14635.5prime Sequence
689 bp (689 high quality bases) assembled on 2006-06-16
> BO14635.5prime
GAAGTTATCAGTCGACATGGCGCACCGCCTCCAGCTCCGTAGCGATGACT
TCGACGTTATCGGCGCCGTGCCCCGCAATCTGTCCGTGATCAAGAACTTC
CTGAAGCGGGACTGTGCCATCAAGAAACTGATCGACATCGAGGAGGAGTT
CCTGCAGGAGTGCGTATTACGCGGCCAGGATCCCATGAATCCGAAGGGTA
AACGTGACAGTGACAGTGGGCCACATGGTAGTGGTTTGGGATCCAATGTG
CCCGAACCCAAGCCGGATCCATGTGCTACCAAGACACCGGAGAACACATT
GGCCTCCGACTACTGTGATCCCTGTCGCCGACTCAAGACCTCCGTGGTTC
TCGAAGAGCTAACCAAGCCGGCCATCACAAATCCGGCTTTCAACAAATCC
CTGCCGCCGTACTTCGATGAAGAGAGCGTGATGGGCAACTCGTTGCCCGT
GAAGTTCCGTTTCCGGCGCAAGTTCAACAAGTGCGACCAGGAGAAGGCCG
GCAACCTGATGTGCACCAACACGCCGAGCACCAATGTGGTCGTGTTGACC
AACTGTTGCGATGTGATGGTCTGGCCCAGTCAACGGGTGGCCCAGATGAA
CCGGGTGCCGGTGACCATGCTGTCGGGCGAAGCCGATCTCACGGAGTACA
TGCTGGAGGAGGAGACCATTATGGCAAGCTTTCTAGACC
BO14635.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4286-PA | 660 | CG4286-RA | 1..657 | 17..673 | 3185 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4286-RA | 821 | CG4286-RA | 99..756 | 16..673 | 3230 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21178196..21178538 | 358..16 | 1670 | 99.1 | Minus |
2R | 25286936 | 2R | 21177819..21178135 | 673..357 | 1570 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:03:09 has no hits.
BO14635.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:23 Download gff for
BO14635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4286-PA | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:25 Download gff for
BO14635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4286-PA | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:56:51 Download gff for
BO14635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4286-RA | 96..756 | 10..673 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:55:32 Download gff for
BO14635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4286-RA | 96..756 | 10..673 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:55:32 Download gff for
BO14635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21177819..21178133 | 359..673 | 99 | <- | Minus |
2R | 21178196..21178541 | 10..358 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:56:51 Download gff for
BO14635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17065324..17065638 | 359..673 | 99 | <- | Minus |
arm_2R | 17065701..17066046 | 10..358 | 98 | | Minus |
BO14635.complete Sequence
691 bp (691 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633207
> BO14635.complete
GAAGTTATCAGTCGACATGGCGCACCGCCTCCAGCTCCGTAGCGATGACT
TCGACGTTATCGGCGCCGTGCCCCGCAATCTGTCCGTGATCAAGAACTTC
CTGAAGCGGGACTGTGCCATCAAGAAACTGATCGACATCGAGGAGGAGTT
CCTGCAGGAGTGCGTATTACGCGGCCAGGATCCCATGAATCCGAAGGGTA
AACGTGACAGTGACAGTGGGCCACATGGTAGTGGTTTGGGATCCAATGTG
CCCGAACCCAAGCCGGATCCATGTGCTACCAAGACACCGGAGAACACATT
GGCCTCCGACTACTGTGATCCCTGTCGCCGACTCAAGACCTCCGTGGTTC
TCGAAGAGCTAACCAAGCCGGCCATCACAAATCCGGCTTTCAACAAATCC
CTGCCGCCGTACTTCGATGAAGAGAGCGTGATGGGCAACTCGTTGCCCGT
GAAGTTCCGTTTCCGGCGCAAGTTCAACAAGTGCGACCAGGAGAAGGCCG
GCAACCTGATGTGCACCAACACGCCGAGCACCAATGTGGTCGTGTTGACC
AACTGTTGCGATGTGATGGTCTGGCCCAGTCAACGGGTGGCCCAGATGAA
CCGGGTGCCGGTGACCATGCTGTCGGGCGAAGCCGATCTCACGGAGTACA
TGCTGGAGGAGGAGACCATTATGGCAAGCTTTCTAGACCAT
BO14635.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4286-RA | 660 | CG4286-PA | 1..657 | 17..673 | 3225 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4286-RA | 821 | CG4286-RA | 99..756 | 16..673 | 3230 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21178196..21178538 | 358..16 | 1670 | 99.1 | Minus |
2R | 25286936 | 2R | 21177819..21178135 | 673..357 | 1570 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:05:09 has no hits.
BO14635.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:20 Download gff for
BO14635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4286-RA | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:18 Download gff for
BO14635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4286-RA | 96..756 | 10..673 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:13 Download gff for
BO14635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4286-RA | 100..756 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:20 Download gff for
BO14635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4286-RA | 96..756 | 10..673 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:13 Download gff for
BO14635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4286-RA | 100..756 | 17..675 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:13 Download gff for
BO14635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21177816..21178133 | 359..675 | 99 | <- | Minus |
2R | 21178196..21178537 | 17..358 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:13 Download gff for
BO14635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17065321..17065638 | 359..675 | 99 | <- | Minus |
arm_2R | 17065701..17066042 | 17..358 | 99 | | Minus |
BO14635.pep Sequence
Translation from 16 to 691
> BO14635.pep
MAHRLQLRSDDFDVIGAVPRNLSVIKNFLKRDCAIKKLIDIEEEFLQECV
LRGQDPMNPKGKRDSDSGPHGSGLGSNVPEPKPDPCATKTPENTLASDYC
DPCRRLKTSVVLEELTKPAITNPAFNKSLPPYFDEESVMGNSLPVKFRFR
RKFNKCDQEKAGNLMCTNTPSTNVVVLTNCCDVMVWPSQRVAQMNRVPVT
MLSGEADLTEYMLEEETIMASFLDH
BO14635.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4286-PA | 219 | CG4286-PA | 1..219 | 1..219 | 1165 | 100 | Plus |
CG30278-PC | 275 | CG30278-PC | 96..221 | 92..217 | 172 | 33.1 | Plus |
CG30278-PB | 275 | CG30278-PB | 96..221 | 92..217 | 172 | 33.1 | Plus |
CG30278-PA | 275 | CG30278-PA | 96..221 | 92..217 | 172 | 33.1 | Plus |