Clone BO14636 Report

Search the DGRC for BO14636

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:146
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptTim17b2-RA
Protein status:BO14636.pep: validated full length
Sequenced Size:562

Clone Sequence Records

BO14636.3prime Sequence

560 bp (560 high quality bases) assembled on 2006-06-02

> BO14636.3prime
ATGGTCTAGAAAGCTTGCGCTAGTTGCAGTGGCCTGCTGAGCACCCGGAA
ATCCAAATCCGGAAGAGTTGAAGTCACCGTATCCTTCATTGGCATCAGGC
ATGATATGCGGTTCACGATTTCGGAACTGTTCCGCCGCGAAACGTGTAAA
AAATATGCCTAAGCCCTCGATCATTGAGAGCAGTACGCCACCGATAATTG
CACTTCCAGCCATGGCCGCCGCTCCATTGCGTGAGGCCAGAATTCCACCA
GTAACTGCTCCGCTCACTATCGAGTTCCAGGGATCCTCCTTTTGGCGAAA
GTGGACCAGACTGCAGTCCACAATGCTGAACACTGCACCCCAGGCGGCGA
AACTTCCACCTATCACCGGAGATTTGGTCTTGATGGCAGCCACACTGCCG
GCGACCCTGCGTCCTAGTCCCTGTGGTGCGTTCCGGAATCCCTTCAGTCC
CTGAAAGAGCCCGCCTCCAACGCAGCCCATGATAAAGGCTCCTCCGCAGT
CGTCGACGATGCGATGGGGACACGGTTCCCGCGAATACTCCTCCATGTCG
ACTGATAACT

BO14636.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15257-PA 531 Tim17b2-RA 1..528 546..19 2590 99.6 Minus
CG15257-PB 1437 Tim17b2-RB 1..503 546..44 2465 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b2-RC 817 CG15257-RC 109..636 546..19 2610 99.6 Minus
Tim17b2-RA 761 CG15257-RA 109..636 546..19 2610 99.6 Minus
CG1724-RA 843 CG1724-RA 125..521 551..155 665 78.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15484837..15485364 546..19 2610 99.6 Minus
X 23542271 X 21202821..21203217 155..551 650 77.6 Plus
3R 32079331 3R 12364287..12364372 245..330 190 81.4 Plus
Blast to na_te.dros performed on 2015-01-31 10:36:57 has no hits.

BO14636.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:24 Download gff for BO14636.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15257-PA 1..531 15..546 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:26 Download gff for BO14636.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15257-PA 1..531 15..546 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:41:21 Download gff for BO14636.3prime
Subject Subject Range Query Range Percent Splice Strand
Tim17b2-RA 100..642 11..553 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:49:31 Download gff for BO14636.3prime
Subject Subject Range Query Range Percent Splice Strand
Tim17b2-RA 100..642 11..553 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:49:31 Download gff for BO14636.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15484828..15485370 11..553 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:41:21 Download gff for BO14636.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15484828..15485370 11..553 98   Minus

BO14636.5prime Sequence

560 bp (560 high quality bases) assembled on 2006-06-02

> BO14636.5prime
GAAGTTATCAGTCGACATGGAGGAGTATTCGCGGGAACCGTGTCCCCATC
GCATCGTCGACGACTGCGGAGGAGCCTTTATCATGGGCTGCGTTGGAGGC
GGGCTCTTTCAGGGACTGAAGGGATTCCGGAACGCACCACAGGGACTAGG
ACGCAGGGTCGCCGGCAGTGTGGCTGCCATCAAGACCAAATCTCCGGTGA
TAGGTGGAAGTTTCGCCGCCTGGGGTGCAGTGTTCAGCATTGTGGACTGC
AGTCTGGTCCACTTTCGCCAAAAGGAGGATCCCTGGAACTCGATAGTGAG
CGGAGCAGTTACTGGTGGAATTCTGGCCTCACGCAATGGAGCGGCGGCCA
TGGCTGGAAGTGCAATTATCGGTGGCGTACTGCTCTCAATGATCGAGGGC
TTAGGCATATTTTTTACACGTTTCGCGGCGGAACAGTTCCGAAATCGTGA
ACCGCATATCATGCCTGATGCCAATGAAGGATACGGTGACTTCAACTCTT
CCGGATTTGGATTTCCGGGTGCTCAGCAGGCCACTGCAACTAGCGCAAGC
TTTCTAGACC

BO14636.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG15257-PA 531 Tim17b2-RA 1..528 17..544 2590 99.6 Plus
CG15257-PB 1437 Tim17b2-RB 1..503 17..519 2465 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b2-RC 817 CG15257-RC 109..636 17..544 2610 99.6 Plus
Tim17b2-RA 761 CG15257-RA 109..636 17..544 2610 99.6 Plus
CG1724-RA 843 CG1724-RA 125..521 12..408 665 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15484837..15485364 17..544 2610 99.6 Plus
X 23542271 X 21202821..21203217 408..12 650 77.6 Minus
3R 32079331 3R 12364287..12364372 318..233 190 81.4 Minus
Blast to na_te.dros performed on 2015-02-11 19:06:06 has no hits.

BO14636.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:24 Download gff for BO14636.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15257-PA 1..531 17..548 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:28 Download gff for BO14636.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15257-PA 1..531 17..548 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:56:34 Download gff for BO14636.5prime
Subject Subject Range Query Range Percent Splice Strand
Tim17b2-RA 100..642 10..552 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:55:39 Download gff for BO14636.5prime
Subject Subject Range Query Range Percent Splice Strand
Tim17b2-RA 100..642 10..552 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:55:39 Download gff for BO14636.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15484828..15485370 10..552 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:56:34 Download gff for BO14636.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15484828..15485370 10..552 98   Plus

BO14636.complete Sequence

562 bp (562 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633208

> BO14636.complete
GAAGTTATCAGTCGACATGGAGGAGTATTCGCGGGAACCGTGTCCCCATC
GCATCGTCGACGACTGCGGAGGAGCCTTTATCATGGGCTGCGTTGGAGGC
GGGCTCTTTCAGGGACTGAAGGGATTCCGGAACGCACCACAGGGACTAGG
ACGCAGGGTCGCCGGCAGTGTGGCTGCCATCAAGACCAAATCTCCGGTGA
TAGGTGGAAGTTTCGCCGCCTGGGGTGCAGTGTTCAGCATTGTGGACTGC
AGTCTGGTCCACTTTCGCCAAAAGGAGGATCCCTGGAACTCGATAGTGAG
CGGAGCAGTTACTGGTGGAATTCTGGCCTCACGCAATGGAGCGGCGGCCA
TGGCTGGAAGTGCAATTATCGGTGGCGTACTGCTCTCAATGATCGAGGGC
TTAGGCATATTTTTTACACGTTTCGCGGCGGAACAGTTCCGAAATCGTGA
ACCGCATATCATGCCTGATGCCAATGAAGGATACGGTGACTTCAACTCTT
CCGGATTTGGATTTCCGGGTGCTCAGCAGGCCACTGCAACTAGCGCAAGC
TTTCTAGACCAT

BO14636.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b2-RC 531 CG15257-PC 1..528 17..544 2610 99.6 Plus
Tim17b2-RA 531 CG15257-PA 1..528 17..544 2610 99.6 Plus
CG1724-RA 558 CG1724-PA 1..392 17..408 640 77.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:41:24
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b2-RC 817 CG15257-RC 109..636 17..544 2610 99.6 Plus
Tim17b2-RA 761 CG15257-RA 109..636 17..544 2610 99.6 Plus
CG1724-RA 843 CG1724-RA 125..521 12..408 650 77.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:41:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15484837..15485364 17..544 2610 99.6 Plus
X 23542271 X 21202821..21203217 408..12 650 77.6 Minus
3R 32079331 3R 12364287..12364372 318..233 190 81.4 Minus
Blast to na_te.dros performed on 2014-11-27 15:41:22 has no hits.

BO14636.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:21 Download gff for BO14636.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b2-RA 1..531 17..548 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:20 Download gff for BO14636.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b2-RA 61..603 10..552 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:42 Download gff for BO14636.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b2-RA 109..636 17..546 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:21 Download gff for BO14636.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b2-RA 61..603 10..552 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:58 Download gff for BO14636.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b2-RA 109..636 17..546 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:58 Download gff for BO14636.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15484837..15485364 17..546 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:42 Download gff for BO14636.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15484837..15485364 17..546 99   Plus

BO14636.pep Sequence

Translation from 16 to 562

> BO14636.pep
MEEYSREPCPHRIVDDCGGAFIMGCVGGGLFQGLKGFRNAPQGLGRRVAG
SVAAIKTKSPVIGGSFAAWGAVFSIVDCSLVHFRQKEDPWNSIVSGAVTG
GILASRNGAAAMAGSAIIGGVLLSMIEGLGIFFTRFAAEQFRNREPHIMP
DANEGYGDFNSSGFGFPGAQQATATSASFLDH

BO14636.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b2-PC 176 CG15257-PC 1..176 1..176 924 100 Plus
Tim17b2-PA 176 CG15257-PA 1..176 1..176 924 100 Plus
CG1724-PA 185 CG1724-PA 1..185 1..176 686 73 Plus
Tim17b-PB 173 CG40451-PB 1..146 1..146 613 74 Plus
Tim17b-PA 173 CG40451-PA 1..146 1..146 613 74 Plus