Clone BO14640 Report

Search the DGRC for BO14640

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:146
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG42336-RC
Protein status:BO14640.pep: validated full length
Sequenced Size:448

Clone Sequence Records

BO14640.3prime Sequence

446 bp (446 high quality bases) assembled on 2006-06-02

> BO14640.3prime
ATGGTCTAGAAAGCTTGCGTTTGACTTCTTGGCCTTCTTCTGTTGCTTGC
TCTTCAGTTTCTCCTGCTTCTTGAGCTCCTTTTCCGTCAGGGATTTGTAC
AGCTTGTAGCCAAAGAGAGCGAATATGGAGACCAAGAGAAAGATCACTGC
CGACACTATGGAACTGGAGTAGGTCTGTGCGAAATGGGCGTGCTGCACTA
TTCGCTCCTCGATTCTGCCAATCGTCTGCTGGAACTTGTCCTTCATCTCG
GCGAGAAACACATGCCGATCCGTTTCGGCCAGGGACTCCAGCTTGCTCTG
CATCTCGCCGATCCGCTGGACGAGATCCTTGGAGAACTTGCTGCTGGGCC
CAGTTTTGGCCACGATCGACTCCACGGACTTTTTCAGCTGCTCAATAACC
CCGAGCTCGTCACTGGAACCCGACCAACTCATGTCGACTGATAACT

BO14640.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13211-PB 417 CG13211-RB 1..414 432..19 2070 100 Minus
CG13211-PA 198 CG13211-RA 94..195 120..19 510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG42336-RC 747 CG42336-RC 183..598 434..19 2080 100 Minus
CG42336-RD 707 CG42336-RD 71..390 434..115 1585 99.7 Minus
CG42336-RD 707 CG42336-RD 457..558 120..19 510 100 Minus
CG42336-RF 901 CG42336-RF 651..752 120..19 510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11294853..11295172 115..434 1585 99.7 Plus
2R 25286936 2R 11294685..11294786 19..120 510 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:01:36 has no hits.

BO14640.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:27 Download gff for BO14640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13211-PB 1..417 16..432 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:32 Download gff for BO14640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13211-PB 1..417 16..432 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:32:40 Download gff for BO14640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42336-RC 179..603 14..440 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:06 Download gff for BO14640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42336-RC 179..603 14..440 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:06 Download gff for BO14640.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11294680..11294785 14..119 98 <- Plus
2R 11294858..11295176 120..440 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:32:40 Download gff for BO14640.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7182185..7182290 14..119 98 <- Plus
arm_2R 7182363..7182681 120..440 98   Plus

BO14640.5prime Sequence

446 bp (446 high quality bases) assembled on 2006-06-02

> BO14640.5prime
GAAGTTATCAGTCGACATGAGTTGGTCGGGTTCCAGTGACGAGCTCGGGG
TTATTGAGCAGCTGAAAAAGTCCGTGGAGTCGATCGTGGCCAAAACTGGG
CCCAGCAGCAAGTTCTCCAAGGATCTCGTCCAGCGGATCGGCGAGATGCA
GAGCAAGCTGGAGTCCCTGGCCGAAACGGATCGGCATGTGTTTCTCGCCG
AGATGAAGGACAAGTTCCAGCAGACGATTGGCAGAATCGAGGAGCGAATA
GTGCAGCACGCCCATTTCGCACAGACCTACTCCAGTTCCATAGTGTCGGC
AGTGATCTTTCTCTTGGTCTCCATATTCGCTCTCTTTGGCTACAAGCTGT
ACAAATCCCTGACGGAAAAGGAGCTCAAGAAGCAGGAGAAACTGAAGAGC
AAGCAACAGAAGAAGGCCAAGAAGTCAAACGCAAGCTTTCTAGACC

BO14640.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13211-PB 417 CG13211-RB 1..414 17..430 2070 100 Plus
CG13211-PA 198 CG13211-RA 94..195 329..430 510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG42336-RC 747 CG42336-RC 183..598 15..430 2080 100 Plus
CG42336-RD 707 CG42336-RD 71..390 15..334 1585 99.7 Plus
CG42336-RD 707 CG42336-RD 457..558 329..430 510 100 Plus
CG42336-RF 901 CG42336-RF 651..752 329..430 510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11294853..11295172 334..15 1585 99.7 Minus
2R 25286936 2R 11294685..11294786 430..329 510 100 Minus
Blast to na_te.dros performed on 2015-02-04 01:48:04 has no hits.

BO14640.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:28 Download gff for BO14640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13211-PB 1..417 17..433 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:33 Download gff for BO14640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13211-PB 1..417 17..433 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:39:42 Download gff for BO14640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42336-RC 179..603 9..435 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:17:16 Download gff for BO14640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42336-RC 179..603 9..435 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:17:16 Download gff for BO14640.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11294680..11294785 330..435 98 <- Minus
2R 11294858..11295176 9..329 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:39:42 Download gff for BO14640.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7182185..7182290 330..435 98 <- Minus
arm_2R 7182363..7182681 9..329 98   Minus

BO14640.complete Sequence

448 bp (448 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633210

> BO14640.complete
GAAGTTATCAGTCGACATGAGTTGGTCGGGTTCCAGTGACGAGCTCGGGG
TTATTGAGCAGCTGAAAAAGTCCGTGGAGTCGATCGTGGCCAAAACTGGG
CCCAGCAGCAAGTTCTCCAAGGATCTCGTCCAGCGGATCGGCGAGATGCA
GAGCAAGCTGGAGTCCCTGGCCGAAACGGATCGGCATGTGTTTCTCGCCG
AGATGAAGGACAAGTTCCAGCAGACGATTGGCAGAATCGAGGAGCGAATA
GTGCAGCACGCCCATTTCGCACAGACCTACTCCAGTTCCATAGTGTCGGC
AGTGATCTTTCTCTTGGTCTCCATATTCGCTCTCTTTGGCTACAAGCTGT
ACAAATCCCTGACGGAAAAGGAGCTCAAGAAGCAGGAGAAACTGAAGAGC
AAGCAACAGAAGAAGGCCAAGAAGTCAAACGCAAGCTTTCTAGACCAT

BO14640.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG42336-RC 417 CG42336-PC 1..414 17..430 2070 100 Plus
CG42336-RD 489 CG42336-PD 1..318 17..334 1575 99.7 Plus
CG42336-RD 489 CG42336-PD 385..486 329..430 510 100 Plus
CG42336-RF 423 CG42336-PF 319..420 329..430 510 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG42336-RC 747 CG42336-RC 183..598 15..430 2080 100 Plus
CG42336-RD 707 CG42336-RD 71..390 15..334 1585 99.7 Plus
CG42336-RD 707 CG42336-RD 457..558 329..430 510 100 Plus
CG42336-RF 901 CG42336-RF 651..752 329..430 510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:14:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11294853..11295172 334..15 1585 99.7 Minus
2R 25286936 2R 11294685..11294786 430..329 510 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:14:56 has no hits.

BO14640.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:56 Download gff for BO14640.complete
Subject Subject Range Query Range Percent Splice Strand
CG42336-RC 1..417 17..433 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:59 Download gff for BO14640.complete
Subject Subject Range Query Range Percent Splice Strand
CG42336-RC 179..603 9..435 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:47 Download gff for BO14640.complete
Subject Subject Range Query Range Percent Splice Strand
CG42336-RC 185..598 17..432 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:56 Download gff for BO14640.complete
Subject Subject Range Query Range Percent Splice Strand
CG42336-RC 179..603 9..435 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:28 Download gff for BO14640.complete
Subject Subject Range Query Range Percent Splice Strand
CG42336-RC 185..598 17..432 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:28 Download gff for BO14640.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11294682..11294785 330..432 98 <- Minus
2R 11294858..11295170 17..329 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:47 Download gff for BO14640.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7182363..7182675 17..329 100   Minus
arm_2R 7182187..7182290 330..432 98 <- Minus

BO14640.pep Sequence

Translation from 16 to 448

> BO14640.pep
MSWSGSSDELGVIEQLKKSVESIVAKTGPSSKFSKDLVQRIGEMQSKLES
LAETDRHVFLAEMKDKFQQTIGRIEERIVQHAHFAQTYSSSIVSAVIFLL
VSIFALFGYKLYKSLTEKELKKQEKLKSKQQKKAKKSNASFLDH

BO14640.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG42336-PC 138 CG13211-PB 1..138 1..138 673 100 Plus
CG42336-PD 162 CG42336-PD 1..162 1..138 638 85.2 Plus
CG42336-PF 140 CG42336-PF 37..140 33..138 191 45.4 Plus
CG42336-PE 140 CG42336-PE 37..140 33..138 191 45.4 Plus
CG42336-PB 65 CG13211-PA 22..65 92..138 170 78.7 Plus