Clone Sequence Records
BO14640.3prime Sequence
446 bp (446 high quality bases) assembled on 2006-06-02
> BO14640.3prime
ATGGTCTAGAAAGCTTGCGTTTGACTTCTTGGCCTTCTTCTGTTGCTTGC
TCTTCAGTTTCTCCTGCTTCTTGAGCTCCTTTTCCGTCAGGGATTTGTAC
AGCTTGTAGCCAAAGAGAGCGAATATGGAGACCAAGAGAAAGATCACTGC
CGACACTATGGAACTGGAGTAGGTCTGTGCGAAATGGGCGTGCTGCACTA
TTCGCTCCTCGATTCTGCCAATCGTCTGCTGGAACTTGTCCTTCATCTCG
GCGAGAAACACATGCCGATCCGTTTCGGCCAGGGACTCCAGCTTGCTCTG
CATCTCGCCGATCCGCTGGACGAGATCCTTGGAGAACTTGCTGCTGGGCC
CAGTTTTGGCCACGATCGACTCCACGGACTTTTTCAGCTGCTCAATAACC
CCGAGCTCGTCACTGGAACCCGACCAACTCATGTCGACTGATAACT
BO14640.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13211-PB | 417 | CG13211-RB | 1..414 | 432..19 | 2070 | 100 | Minus |
CG13211-PA | 198 | CG13211-RA | 94..195 | 120..19 | 510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42336-RC | 747 | CG42336-RC | 183..598 | 434..19 | 2080 | 100 | Minus |
CG42336-RD | 707 | CG42336-RD | 71..390 | 434..115 | 1585 | 99.7 | Minus |
CG42336-RD | 707 | CG42336-RD | 457..558 | 120..19 | 510 | 100 | Minus |
CG42336-RF | 901 | CG42336-RF | 651..752 | 120..19 | 510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:01:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11294853..11295172 | 115..434 | 1585 | 99.7 | Plus |
2R | 25286936 | 2R | 11294685..11294786 | 19..120 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:01:36 has no hits.
BO14640.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:27 Download gff for
BO14640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13211-PB | 1..417 | 16..432 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:32 Download gff for
BO14640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13211-PB | 1..417 | 16..432 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:32:40 Download gff for
BO14640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42336-RC | 179..603 | 14..440 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:06 Download gff for
BO14640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42336-RC | 179..603 | 14..440 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:06 Download gff for
BO14640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11294680..11294785 | 14..119 | 98 | <- | Plus |
2R | 11294858..11295176 | 120..440 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:32:40 Download gff for
BO14640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7182185..7182290 | 14..119 | 98 | <- | Plus |
arm_2R | 7182363..7182681 | 120..440 | 98 | | Plus |
BO14640.5prime Sequence
446 bp (446 high quality bases) assembled on 2006-06-02
> BO14640.5prime
GAAGTTATCAGTCGACATGAGTTGGTCGGGTTCCAGTGACGAGCTCGGGG
TTATTGAGCAGCTGAAAAAGTCCGTGGAGTCGATCGTGGCCAAAACTGGG
CCCAGCAGCAAGTTCTCCAAGGATCTCGTCCAGCGGATCGGCGAGATGCA
GAGCAAGCTGGAGTCCCTGGCCGAAACGGATCGGCATGTGTTTCTCGCCG
AGATGAAGGACAAGTTCCAGCAGACGATTGGCAGAATCGAGGAGCGAATA
GTGCAGCACGCCCATTTCGCACAGACCTACTCCAGTTCCATAGTGTCGGC
AGTGATCTTTCTCTTGGTCTCCATATTCGCTCTCTTTGGCTACAAGCTGT
ACAAATCCCTGACGGAAAAGGAGCTCAAGAAGCAGGAGAAACTGAAGAGC
AAGCAACAGAAGAAGGCCAAGAAGTCAAACGCAAGCTTTCTAGACC
BO14640.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13211-PB | 417 | CG13211-RB | 1..414 | 17..430 | 2070 | 100 | Plus |
CG13211-PA | 198 | CG13211-RA | 94..195 | 329..430 | 510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42336-RC | 747 | CG42336-RC | 183..598 | 15..430 | 2080 | 100 | Plus |
CG42336-RD | 707 | CG42336-RD | 71..390 | 15..334 | 1585 | 99.7 | Plus |
CG42336-RD | 707 | CG42336-RD | 457..558 | 329..430 | 510 | 100 | Plus |
CG42336-RF | 901 | CG42336-RF | 651..752 | 329..430 | 510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:48:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11294853..11295172 | 334..15 | 1585 | 99.7 | Minus |
2R | 25286936 | 2R | 11294685..11294786 | 430..329 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:48:04 has no hits.
BO14640.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:28 Download gff for
BO14640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13211-PB | 1..417 | 17..433 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:33 Download gff for
BO14640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13211-PB | 1..417 | 17..433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:39:42 Download gff for
BO14640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42336-RC | 179..603 | 9..435 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:17:16 Download gff for
BO14640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42336-RC | 179..603 | 9..435 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:17:16 Download gff for
BO14640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11294680..11294785 | 330..435 | 98 | <- | Minus |
2R | 11294858..11295176 | 9..329 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:39:42 Download gff for
BO14640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7182185..7182290 | 330..435 | 98 | <- | Minus |
arm_2R | 7182363..7182681 | 9..329 | 98 | | Minus |
BO14640.complete Sequence
448 bp (448 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633210
> BO14640.complete
GAAGTTATCAGTCGACATGAGTTGGTCGGGTTCCAGTGACGAGCTCGGGG
TTATTGAGCAGCTGAAAAAGTCCGTGGAGTCGATCGTGGCCAAAACTGGG
CCCAGCAGCAAGTTCTCCAAGGATCTCGTCCAGCGGATCGGCGAGATGCA
GAGCAAGCTGGAGTCCCTGGCCGAAACGGATCGGCATGTGTTTCTCGCCG
AGATGAAGGACAAGTTCCAGCAGACGATTGGCAGAATCGAGGAGCGAATA
GTGCAGCACGCCCATTTCGCACAGACCTACTCCAGTTCCATAGTGTCGGC
AGTGATCTTTCTCTTGGTCTCCATATTCGCTCTCTTTGGCTACAAGCTGT
ACAAATCCCTGACGGAAAAGGAGCTCAAGAAGCAGGAGAAACTGAAGAGC
AAGCAACAGAAGAAGGCCAAGAAGTCAAACGCAAGCTTTCTAGACCAT
BO14640.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42336-RC | 417 | CG42336-PC | 1..414 | 17..430 | 2070 | 100 | Plus |
CG42336-RD | 489 | CG42336-PD | 1..318 | 17..334 | 1575 | 99.7 | Plus |
CG42336-RD | 489 | CG42336-PD | 385..486 | 329..430 | 510 | 100 | Plus |
CG42336-RF | 423 | CG42336-PF | 319..420 | 329..430 | 510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42336-RC | 747 | CG42336-RC | 183..598 | 15..430 | 2080 | 100 | Plus |
CG42336-RD | 707 | CG42336-RD | 71..390 | 15..334 | 1585 | 99.7 | Plus |
CG42336-RD | 707 | CG42336-RD | 457..558 | 329..430 | 510 | 100 | Plus |
CG42336-RF | 901 | CG42336-RF | 651..752 | 329..430 | 510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:14:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11294853..11295172 | 334..15 | 1585 | 99.7 | Minus |
2R | 25286936 | 2R | 11294685..11294786 | 430..329 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:14:56 has no hits.
BO14640.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:56 Download gff for
BO14640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42336-RC | 1..417 | 17..433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:59 Download gff for
BO14640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42336-RC | 179..603 | 9..435 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:51:47 Download gff for
BO14640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42336-RC | 185..598 | 17..432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:56 Download gff for
BO14640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42336-RC | 179..603 | 9..435 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:28 Download gff for
BO14640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42336-RC | 185..598 | 17..432 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:28 Download gff for
BO14640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11294682..11294785 | 330..432 | 98 | <- | Minus |
2R | 11294858..11295170 | 17..329 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:51:47 Download gff for
BO14640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7182363..7182675 | 17..329 | 100 | | Minus |
arm_2R | 7182187..7182290 | 330..432 | 98 | <- | Minus |
BO14640.pep Sequence
Translation from 16 to 448
> BO14640.pep
MSWSGSSDELGVIEQLKKSVESIVAKTGPSSKFSKDLVQRIGEMQSKLES
LAETDRHVFLAEMKDKFQQTIGRIEERIVQHAHFAQTYSSSIVSAVIFLL
VSIFALFGYKLYKSLTEKELKKQEKLKSKQQKKAKKSNASFLDH
BO14640.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42336-PC | 138 | CG13211-PB | 1..138 | 1..138 | 673 | 100 | Plus |
CG42336-PD | 162 | CG42336-PD | 1..162 | 1..138 | 638 | 85.2 | Plus |
CG42336-PF | 140 | CG42336-PF | 37..140 | 33..138 | 191 | 45.4 | Plus |
CG42336-PE | 140 | CG42336-PE | 37..140 | 33..138 | 191 | 45.4 | Plus |
CG42336-PB | 65 | CG13211-PA | 22..65 | 92..138 | 170 | 78.7 | Plus |