Clone Sequence Records
BO14641.3prime Sequence
749 bp (724 high quality bases) assembled on 2006-06-16
> BO14641.3prime
ATGGTCTAGAAAGCTTGCGTGTGTCTTATGGCGGAAATATGCATACACGT
CGCACATGTTAACCTTCTTCTCGCACTCGCATGGTGGGATGGGGTCGAGC
AGTTCCTTTTTGCACTCCGAGAAGCTGGGATACTTGGTGCGACGCTTCTT
GCAGCAGGTGGGAATTCGACCAGCGTCGCAGGATGGTGGTATCCGGCCAT
CGCGGCAACCTGGCGTGGGGATCTTGCAGCATGGCCACTTCCCGATACGC
GGCACTTCAATCAGTATCTCGGGCTTTTTCTTCACGTCATCACAGGGCAT
GGGATCCCAGCGGCACTCGACATCAGAGACCCTCGGACACTCGAACTTAC
GCCGCGGTCTATTCGGATAGCATTTCCTGGCCTTGACAGCCGCCTTGGGT
ATCATATAGCACTCGCACCAGGTGCGTTGATATTTGCGCGCGGCCTTGTC
GCTCGGAGTATAGTGGTCCAGATCCAATGGCATCTCTGATTCCGCACATG
GGTCGTCTATGCACTCCATCTTGGGTAGTGGTAGCACTGGCGGATGGCAC
TTCTTATCGTTGCGACTGGCCGCCTTGTAGCACATTTCGTCTAGCCGCTT
GAGTTCTTTTAGATGCTCCAAACGCCTGCGACGCAGATTCATCTTTTTTA
CCGTGTCGTATGTGCGCTTGATCGTCAGCGATCCCAAGCTGTGCTGCATC
AACAGCGTTCGTTGGACTGTCTGCAACACCCCCATGTCGACTGATAACT
BO14641.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12861-PA | 720 | CG12861-RA | 1..717 | 735..19 | 3310 | 98.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12861-RA | 1111 | CG12861-RA | 109..825 | 735..19 | 3420 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:31:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14664532..14665248 | 19..735 | 3420 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:31:14 has no hits.
BO14641.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:29 Download gff for
BO14641.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12861-PA | 1..720 | 15..735 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:35 Download gff for
BO14641.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12861-PA | 1..720 | 15..735 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:59:11 Download gff for
BO14641.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12861-RA | 100..831 | 11..744 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:12:22 Download gff for
BO14641.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12861-RA | 100..831 | 11..744 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:12:22 Download gff for
BO14641.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14664526..14665257 | 11..744 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:59:11 Download gff for
BO14641.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10552031..10552762 | 11..744 | 97 | | Plus |
BO14641.5prime Sequence
749 bp (749 high quality bases) assembled on 2006-06-16
> BO14641.5prime
GAAGTTATCAGTCGACATGGGGGTGTTGCAGACAGTCCAACGAACGCTGT
TGATGCAGCACAGCTTGGGATCGCTGACGATCAAGCGCACATACGACACG
GTAAAAAAGATGAATCTGCGTCGCAGGCGTTTGGAGCATCTAAAAGAACT
CAAGCGGCTAGACGAAATGTGCTACAAGGCGGCCAGTCGCAACGATAAGA
AGTGCCATCCGCCAGTGCTACCACTACCCAAGATGGAGTGCATAGACGAC
CCATGTGCGGAATCAGAGATGCCATTGGATCTGGACCACTATACTCCGAG
CGACAAGGCCGCGCGCAAATATCAACGCACCTGGTGCGAGTGCTATATGA
TACCCAAGGCGGCTGTCAAGGCCAGGAAATGCTATCCGAATAGACCGCGG
CGTAAGTTCGAGTGTCCGAGGGTCTCTGATGTCGAGTGCCGCTGGGATCC
CATGCCCTGTGATGACGTGAAGAAAAAGCCCGAGATACTGATTGAAGTGC
CGCGTATCGGGAAGTGGCCATGCTGCAAGATCCCCACGCCAGGTTGCCGC
GATGGCCGGATACCACCATCCTGCGACGCTGGTCGAATTCCCACCTGCTG
CAAGAAGCGTCGCACCAAGTATCCCAGCTTCTCGGAGTGCAAAAAGGAAC
TGCTCGACCCCATCCCACCATGCGAGTGCGAGAAGAAGGTTAACATGTGC
GACGTGTATGCATATTTCCGCCATAAGACACACGCAAGCTTTCTAGACC
BO14641.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12861-PA | 720 | CG12861-RA | 1..717 | 17..733 | 3310 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12861-RA | 1111 | CG12861-RA | 109..825 | 17..733 | 3420 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14664532..14665248 | 733..17 | 3420 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:22:53 has no hits.
BO14641.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:31 Download gff for
BO14641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12861-PA | 1..720 | 17..737 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:36 Download gff for
BO14641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12861-PA | 1..720 | 17..737 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:32:22 Download gff for
BO14641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12861-RA | 100..831 | 8..741 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:18:39 Download gff for
BO14641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12861-RA | 100..831 | 8..741 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:18:39 Download gff for
BO14641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14664526..14665257 | 8..741 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:32:22 Download gff for
BO14641.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10552031..10552762 | 8..741 | 97 | | Minus |
BO14641.complete Sequence
751 bp (751 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633211
> BO14641.complete
GAAGTTATCAGTCGACATGGGGGTGTTGCAGACAGTCCAACGAACGCTGT
TGATGCAGCACAGCTTGGGATCGCTGACGATCAAGCGCACATACGACACG
GTAAAAAAGATGAATCTGCGTCGCAGGCGTTTGGAGCATCTAAAAGAACT
CAAGCGGCTAGACGAAATGTGCTACAAGGCGGCCAGTCGCAACGATAAGA
AGTGCCATCCGCCAGTGCTACCACTACCCAAGATGGAGTGCATAGACGAC
CCATGTGCGGAATCAGAGATGCCATTGGATCTGGACCACTATACTCCGAG
CGACAAGGCCGCGCGCAAATATCAACGCACCTGGTGCGAGTGCTATATGA
TACCCAAGGCGGCTGTCAAGGCCAGGAAATGCTATCCGAATAGACCGCGG
CGTAAGTTCGAGTGTCCGAGGGTCTCTGATGTCGAGTGCCGCTGGGATCC
CATGCCCTGTGATGACGTGAAGAAAAAGCCCGAGATACTGATTGAAGTGC
CGCGTATCGGGAAGTGGCCATGCTGCAAGATCCCCACGCCAGGTTGCCGC
GATGGCCGGATACCACCATCCTGCGACGCTGGTCGAATTCCCACCTGCTG
CAAGAAGCGTCGCACCAAGTATCCCAGCTTCTCGGAGTGCAAAAAGGAAC
TGCTCGACCCCATCCCACCATGCGAGTGCGAGAAGAAGGTTAACATGTGC
GACGTGTATGCATATTTCCGCCATAAGACACACGCAAGCTTTCTAGACCA
T
BO14641.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12861-RA | 720 | CG12861-PA | 1..717 | 17..733 | 3420 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12861-RA | 1111 | CG12861-RA | 109..825 | 17..733 | 3420 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14664532..14665248 | 733..17 | 3420 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:10:43 has no hits.
BO14641.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:38 Download gff for
BO14641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12861-RA | 1..720 | 17..737 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:26 Download gff for
BO14641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12861-RA | 95..826 | 8..741 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:23 Download gff for
BO14641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12861-RA | 109..825 | 17..735 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:38 Download gff for
BO14641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12861-RA | 95..826 | 8..741 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:30 Download gff for
BO14641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12861-RA | 109..825 | 17..735 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:30 Download gff for
BO14641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14664530..14665248 | 17..735 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:23 Download gff for
BO14641.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10552035..10552753 | 17..735 | 98 | | Minus |
BO14641.pep Sequence
Translation from 16 to 751
> BO14641.pep
MGVLQTVQRTLLMQHSLGSLTIKRTYDTVKKMNLRRRRLEHLKELKRLDE
MCYKAASRNDKKCHPPVLPLPKMECIDDPCAESEMPLDLDHYTPSDKAAR
KYQRTWCECYMIPKAAVKARKCYPNRPRRKFECPRVSDVECRWDPMPCDD
VKKKPEILIEVPRIGKWPCCKIPTPGCRDGRIPPSCDAGRIPTCCKKRRT
KYPSFSECKKELLDPIPPCECEKKVNMCDVYAYFRHKTHASFLDH
BO14641.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12861-PA | 239 | CG12861-PA | 1..239 | 1..239 | 1351 | 100 | Plus |
| boly-PA | 255 | CG30362-PA | 64..253 | 50..237 | 255 | 33.5 | Plus |
| CG4691-PA | 262 | CG4691-PA | 52..260 | 34..237 | 245 | 31.7 | Plus |
| CG2127-PB | 289 | CG2127-PB | 116..275 | 74..237 | 230 | 36 | Plus |
| CG2127-PA | 305 | CG2127-PA | 132..291 | 74..237 | 230 | 36 | Plus |
