Clone BO14643 Report

Search the DGRC for BO14643

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:146
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG6914-RA
Protein status:BO14643.pep: validated full length
Sequenced Size:469

Clone Sequence Records

BO14643.3prime Sequence

467 bp (467 high quality bases) assembled on 2006-06-16

> BO14643.3prime
ATGGTCTAGAAAGCTTGCATGTGGCCCCTCCCAAGAATGCACCTTTCCTG
GAGTCGGGAGCTTCTTCGCGCCGGAATTGCCTTCATCGCATTCATTTGTA
TCAGTAGTCTTGGGCCCGACAGGTGGAATGGGGCTACCATCTTTCGGCGC
ATCTCCAGACTTGGCCTGAGCCTTTTTGGCTGCTTCCTCCTCCTTCACCT
TGGCGGTGAGCATCTTCTTGTGCTCCTGCACCACGTCGACGAAGGGCTTC
ACCAAGCGCCGAGGATCCCTGGTGTAGTAGTAGTTGGCGAACAGACTCTG
GGTAGGACCACTAGGGATGTTTGGGGGCGGCTGAGTGCGCGGAGAGACCA
TGTCCGCGAAGCGATGGGCCGTCTTGTGGGTGCGGCCCAGCAGGAAGTTG
CGCACCCGGCTGAGAAAGCCGGCTACGTCGCGATGCTTGGGTTTCGGAGG
CATGTCGACTGATAACT

BO14643.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6914-PA 438 CG6914-RA 1..435 453..19 2175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6914-RA 758 CG6914-RA 71..505 453..19 2175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22606439..22606873 453..19 2175 100 Minus
Blast to na_te.dros performed on 2015-02-03 07:14:28 has no hits.

BO14643.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:33 Download gff for BO14643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6914-PA 1..438 15..453 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:38 Download gff for BO14643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6914-PA 1..438 15..453 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:36:53 Download gff for BO14643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6914-RA 63..515 9..460 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:43:02 Download gff for BO14643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6914-RA 63..515 9..460 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:43:02 Download gff for BO14643.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22606431..22606883 9..460 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:36:53 Download gff for BO14643.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22599531..22599983 9..460 98   Minus

BO14643.5prime Sequence

467 bp (467 high quality bases) assembled on 2006-06-16

> BO14643.5prime
GAAGTTATCAGTCGACATGCCTCCGAAACCCAAGCATCGCGACGTAGCCG
GCTTTCTCAGCCGGGTGCGCAACTTCCTGCTGGGCCGCACCCACAAGACG
GCCCATCGCTTCGCGGACATGGTCTCTCCGCGCACTCAGCCGCCCCCAAA
CATCCCTAGTGGTCCTACCCAGAGTCTGTTCGCCAACTACTACTACACCA
GGGATCCTCGGCGCTTGGTGAAGCCCTTCGTCGACGTGGTGCAGGAGCAC
AAGAAGATGCTCACCGCCAAGGTGAAGGAGGAGGAAGCAGCCAAAAAGGC
TCAGGCCAAGTCTGGAGATGCGCCGAAAGATGGTAGCCCCATTCCACCTG
TCGGGCCCAAGACTACTGATACAAATGAATGCGATGAAGGCAATTCCGGC
GCGAAGAAGCTCCCGACTCCAGGAAAGGTGCATTCTTGGGAGGGGCCACA
TGCAAGCTTTCTAGACC

BO14643.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6914-PA 438 CG6914-RA 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6914-RA 758 CG6914-RA 71..505 17..451 2175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22606439..22606873 17..451 2175 100 Plus
Blast to na_te.dros performed on 2015-02-11 19:07:51 has no hits.

BO14643.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:34 Download gff for BO14643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6914-PA 1..438 17..455 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:40 Download gff for BO14643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6914-PA 1..438 17..455 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:57:09 Download gff for BO14643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6914-RA 63..515 10..461 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:01:07 Download gff for BO14643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6914-RA 63..515 10..461 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:01:07 Download gff for BO14643.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22606431..22606883 10..461 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:57:09 Download gff for BO14643.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22599531..22599983 10..461 98   Plus

BO14643.complete Sequence

469 bp (469 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633212

> BO14643.complete
GAAGTTATCAGTCGACATGCCTCCGAAACCCAAGCATCGCGACGTAGCCG
GCTTTCTCAGCCGGGTGCGCAACTTCCTGCTGGGCCGCACCCACAAGACG
GCCCATCGCTTCGCGGACATGGTCTCTCCGCGCACTCAGCCGCCCCCAAA
CATCCCTAGTGGTCCTACCCAGAGTCTGTTCGCCAACTACTACTACACCA
GGGATCCTCGGCGCTTGGTGAAGCCCTTCGTCGACGTGGTGCAGGAGCAC
AAGAAGATGCTCACCGCCAAGGTGAAGGAGGAGGAAGCAGCCAAAAAGGC
TCAGGCCAAGTCTGGAGATGCGCCGAAAGATGGTAGCCCCATTCCACCTG
TCGGGCCCAAGACTACTGATACAAATGAATGCGATGAAGGCAATTCCGGC
GCGAAGAAGCTCCCGACTCCAGGAAAGGTGCATTCTTGGGAGGGGCCACA
TGCAAGCTTTCTAGACCAT

BO14643.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6914-RA 438 CG6914-PA 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6914-RA 758 CG6914-RA 71..505 17..451 2175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22606439..22606873 17..451 2175 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:57:55 has no hits.

BO14643.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:03 Download gff for BO14643.complete
Subject Subject Range Query Range Percent Splice Strand
CG6914-RA 1..438 17..455 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:03 Download gff for BO14643.complete
Subject Subject Range Query Range Percent Splice Strand
CG6914-RA 63..515 10..461 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:42 Download gff for BO14643.complete
Subject Subject Range Query Range Percent Splice Strand
CG6914-RA 71..505 17..453 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:03 Download gff for BO14643.complete
Subject Subject Range Query Range Percent Splice Strand
CG6914-RA 63..515 10..461 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:01 Download gff for BO14643.complete
Subject Subject Range Query Range Percent Splice Strand
CG6914-RA 71..505 17..453 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:01 Download gff for BO14643.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22606439..22606873 17..453 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:42 Download gff for BO14643.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22599539..22599973 17..453 99   Plus

BO14643.pep Sequence

Translation from 16 to 469

> BO14643.pep
MPPKPKHRDVAGFLSRVRNFLLGRTHKTAHRFADMVSPRTQPPPNIPSGP
TQSLFANYYYTRDPRRLVKPFVDVVQEHKKMLTAKVKEEEAAKKAQAKSG
DAPKDGSPIPPVGPKTTDTNECDEGNSGAKKLPTPGKVHSWEGPHASFLD
H

BO14643.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6914-PA 145 CG6914-PA 1..145 1..145 787 100 Plus
CG3621-PB 103 CG3621-PB 6..103 8..142 215 40 Plus
CG3621-PA 103 CG3621-PA 6..103 8..142 215 40 Plus