Clone Sequence Records
BO14647.3prime Sequence
741 bp (649 high quality bases) assembled on 2006-06-02
> BO14647.3prime
ATGGTCTAGAAAGCTTGCAGTGCGTTTCTTGGTCATGTAAACTCGAGCTG
TGGCGTAGAGGACATGCGTACAAGCGTATATATTGCCCAGAGCGCTTCCC
AGCAGTGCTCCGATCACGTTGGGAATGGGATAAGCCTGCCAGTCACGTCC
CCAGTCTAGTGGAGCGACCACGCTCCCGGCCCAAGCTCCCAGAATACCGC
CCAGTGCATTGTACTTGAACAGATTCAGAGCCGTGTCCTCGCACTTGGTC
ACAAAGTCCGGTTTCTCGCAGAAGCACACTTGTAGTGCTCCTCCGCCACC
GAGGAGGAAAACCGTGGGTGACACCGTCAACAAGGTCATCAGTAAGGCCA
AGACGAAGGTCTGCTCATAGTTGCCCAGCACCGGGGCTCCCAAAATTATG
CAGATAAAGGCGTAGAGGAGTGTACACAGGAACTGCAGGGTGAATCCTCC
GAGGAGCTCCCGCGGCGTAAAGTACGAGTTCTTTTTCTGGCGCTGTTTGG
CGGTTAGGACGCCATCCTCAACCTTCCCGTAGAAGCGAGCCAAAACAACT
TTTAGCAGCTCTCCGAGGAAAACAATAGGGACGACAAGAGAATCCCAGAA
GCTGCCGAGATGTGCCCAATTCCGGCGATACTGCATGTACGCCATGCAGA
TCAGGATGGTGGCGAGGCTGAAGGACACGTGAAAAAGCTGGTGCTTGGTC
TTTTGTTGGTCGAATCCGGAAACCATGTCGACTGATAACTT
BO14647.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9376-PA | 711 | CG9376-RA | 1..708 | 726..19 | 3440 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:42:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9376-RA | 1035 | CG9376-RA | 96..804 | 727..19 | 3485 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:42:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19612550..19613258 | 727..19 | 3485 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:42:36 has no hits.
BO14647.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:35 Download gff for
BO14647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-PA | 1..711 | 15..726 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:41 Download gff for
BO14647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-PA | 1..711 | 15..726 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:45:38 Download gff for
BO14647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-RA | 88..811 | 12..734 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:49:40 Download gff for
BO14647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-RA | 88..811 | 12..734 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:49:40 Download gff for
BO14647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19612542..19613265 | 12..734 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:45:38 Download gff for
BO14647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19605642..19606365 | 12..734 | 98 | | Minus |
BO14647.5prime Sequence
740 bp (740 high quality bases) assembled on 2006-06-16
> BO14647.5prime
GAAGTTATCAGTCGACATGGTTTCCCGATTCGACCAACAAAAGACCAAGC
ACCAGCTCTTCCACGTGTCCCTCAGCCTCGCCACCATCCTGATCTGCATG
GCGTACATGCAGTATCGCCGGAATTGGGCACATCTCGGCAGCTTCTGGGA
TTCTCTTGTCGTCCCTATTGTTTTCCTCGGAGAGCTGCTAAAAGTTGTTT
TGGCTCGCTTCTACGGGAAGGTTGAGGATGGCGTCCTAACCGCCAAACAG
CGCCAGAAAAAGAACTCGTACTTTACGCCGCGGGAGCTCCTCGGAGGATT
CACCCTGCAGTTCCTGTGTACACTCCTCTACGCCTTTATCTGCATAATTT
TGGGAGCCCCGGTGCTGGGCAACTATGAGCAGACCTTCGTCTTGGCCTTA
CTGATGACCTTGTTGACGGTGTCACCCACGGTTTTCCTCCTCGGTGGCGG
AGGAGCACTACAAGTGTGCTTCTGCGAGAAACCGGACTTTGTGACCAAGT
GCGAGGACACGGCTCTGAATCTGTTCAAGTACAATGCACTGGGCGGTATT
CTGGGAGCTTGGGCCGGGAGCGTGGTCGCTCCACTAGACTGGGGACGTGA
CTGGCAGGCTTATCCCATTCCCAACGTGATCGGAGCACTGCTGGGAAGCG
CTCTGGGCAATATATACGCTTGTACGCATGTCCTCTACGCCACAGCTCGA
GTTTACATGACCAAGAAACGCACTGCAAGCTTTCTAGACC
BO14647.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9376-PA | 711 | CG9376-RA | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9376-RA | 1035 | CG9376-RA | 96..804 | 16..724 | 3545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:04:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19612550..19613258 | 16..724 | 3545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:04:44 has no hits.
BO14647.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:36 Download gff for
BO14647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-PA | 1..711 | 17..728 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:43 Download gff for
BO14647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-PA | 1..711 | 17..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:27:23 Download gff for
BO14647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-RA | 88..811 | 9..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:36:37 Download gff for
BO14647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-RA | 88..811 | 9..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:36:37 Download gff for
BO14647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19612542..19613265 | 9..731 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:27:23 Download gff for
BO14647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19605642..19606365 | 9..731 | 99 | | Plus |
BO14647.complete Sequence
742 bp (742 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633213
> BO14647.complete
GAAGTTATCAGTCGACATGGTTTCCCGATTCGACCAACAAAAGACCAAGC
ACCAGCTCTTCCACGTGTCCCTCAGCCTCGCCACCATCCTGATCTGCATG
GCGTACATGCAGTATCGCCGGAATTGGGCACATCTCGGCAGCTTCTGGGA
TTCTCTTGTCGTCCCTATTGTTTTCCTCGGAGAGCTGCTAAAAGTTGTTT
TGGCTCGCTTCTACGGGAAGGTTGAGGATGGCGTCCTAACCGCCAAACAG
CGCCAGAAAAAGAACTCGTACTTTACGCCGCGGGAGCTCCTCGGAGGATT
CACCCTGCAGTTCCTGTGTACACTCCTCTACGCCTTTATCTGCATAATTT
TGGGAGCCCCGGTGCTGGGCAACTATGAGCAGACCTTCGTCTTGGCCTTA
CTGATGACCTTGTTGACGGTGTCACCCACGGTTTTCCTCCTCGGTGGCGG
AGGAGCACTACAAGTGTGCTTCTGCGAGAAACCGGACTTTGTGACCAAGT
GCGAGGACACGGCTCTGAATCTGTTCAAGTACAATGCACTGGGCGGTATT
CTGGGAGCTTGGGCCGGGAGCGTGGTCGCTCCACTAGACTGGGGACGTGA
CTGGCAGGCTTATCCCATTCCCAACGTGATCGGAGCACTGCTGGGAAGCG
CTCTGGGCAATATATACGCTTGTACGCATGTCCTCTACGCCACAGCTCGA
GTTTACATGACCAAGAAACGCACTGCAAGCTTTCTAGACCAT
BO14647.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9376-RA | 711 | CG9376-PA | 1..708 | 17..724 | 3540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9376-RA | 1035 | CG9376-RA | 96..804 | 16..724 | 3545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:46:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19612550..19613258 | 16..724 | 3545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:46:18 has no hits.
BO14647.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:04 Download gff for
BO14647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-RA | 1..711 | 17..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:58 Download gff for
BO14647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-RA | 4..727 | 9..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:23 Download gff for
BO14647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-RA | 97..804 | 17..726 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:05 Download gff for
BO14647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-RA | 4..727 | 9..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:08 Download gff for
BO14647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9376-RA | 97..804 | 17..726 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:08 Download gff for
BO14647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19612551..19613258 | 17..726 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:23 Download gff for
BO14647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19605651..19606358 | 17..726 | 99 | | Plus |
BO14647.pep Sequence
Translation from 16 to 742
> BO14647.pep
MVSRFDQQKTKHQLFHVSLSLATILICMAYMQYRRNWAHLGSFWDSLVVP
IVFLGELLKVVLARFYGKVEDGVLTAKQRQKKNSYFTPRELLGGFTLQFL
CTLLYAFICIILGAPVLGNYEQTFVLALLMTLLTVSPTVFLLGGGGALQV
CFCEKPDFVTKCEDTALNLFKYNALGGILGAWAGSVVAPLDWGRDWQAYP
IPNVIGALLGSALGNIYACTHVLYATARVYMTKKRTASFLDH
BO14647.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9376-PA | 236 | CG9376-PA | 1..236 | 1..236 | 1241 | 100 | Plus |
