Clone Sequence Records
BO14651.5prime Sequence
720 bp (705 high quality bases) assembled on 2006-06-02
> BO14651.5prime
GAAGTTATCAGTCGACATGGCTTTGCGCGGTTCCCACCGCTTGGAAGTGA
TCTTCAAACGCTGCATTGCCTCCCCGGTGTTACACAGTCATGCAGCCAAT
CGGAGGAGCAGTCAACTAGCGATCAAAGAAGGCGATCCAAACAGCAATGG
TAACAGTGGGCAATATCAGCAAAATGGTGAACAAAAAGAAAAAGGCTGGA
GACGATTGGTTCGATTCTTTGTGCCCTTCTCCCTGGGCGCTGTGGTCAGT
GCGGCGATCATCCAGCGGGAAGACTTAACGCCAACGATCGCCGCTTCCAA
AATGACCGGTCGTCGGCGGGACTTCAACTTTATAGCTGATGTGGTGGCAG
GTTGTGCGGATTCGGTGGTCTACATTGAGATTAAGGACACCCGCCACTTT
GACTACTTCAGCGGCCAACCGATTACGGCATCGAATGGTTCCGGCTTCAT
TATTGAGCAGAACGGTCTCATCCTTACCAACGCCCATGTGGTGATCAACA
AACCACACACAATGGTACAGGTGAGGCTATCCGATGGCAGGACTTTTCCC
GCCACCATCGAGGACGTGGATCAGACATCCGATCTGGCGACTTTGCGCAT
ACAGGTGAACAATCTTTCGGTGATGCGGCTAGGCAAGAGCAGTACCCTGC
GATCCGGCGAGTGGGTTGTGGCCTTAGGCAGTCCGCTGGCCCTAAGCAAT
ACGGTGACAGCAGGCGTAAT
BO14651.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8464-PA | 1269 | CG8464-RA | 1..704 | 17..720 | 3495 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HtrA2-RB | 2512 | CG8464-RB | 306..1010 | 16..720 | 3510 | 99.9 | Plus |
HtrA2-RA | 1415 | CG8464-RA | 54..758 | 16..720 | 3510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14510817..14511407 | 606..16 | 2940 | 99.8 | Minus |
3R | 32079331 | 3R | 14510635..14510755 | 720..600 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:07:41 has no hits.
BO14651.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:40 Download gff for
BO14651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8464-PA | 1..704 | 17..720 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:49 Download gff for
BO14651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8464-PA | 1..704 | 17..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:24 Download gff for
BO14651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HtrA2-RA | 54..758 | 16..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:49 Download gff for
BO14651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HtrA2-RA | 54..758 | 16..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:49 Download gff for
BO14651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14510635..14510750 | 605..720 | 100 | <- | Minus |
3R | 14510819..14511407 | 16..604 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:24 Download gff for
BO14651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10336357..10336472 | 605..720 | 100 | <- | Minus |
arm_3R | 10336541..10337129 | 16..604 | 99 | | Minus |
BO14651.complete Sequence
1300 bp (1300 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633215
> BO14651.complete
GAAGTTATCAGTCGACATGGCTTTGCGCGGTTCCCACCGCTTGGAAGTGA
TCTTCAAACGCTGCATTGCCTCCCCGGTGTTACACAGTCATGCAGCCAAT
CGGAGGAGCAGTCAACTAGCGATCAAAGAAGGCGATCCAAACAGCAATGG
TAACAGTGGGCAATATCAGCAAAATGGTGAACAAAAAGAAAAAGGCTGGA
GACGATTGGTTCGATTCTTTGTGCCCTTCTCCCTGGGCGCTGTGGTCAGT
GCGGCGATCATCCAGCGGGAAGACTTAACGCCAACGATCGCCGCTTCCAA
AATGACCGGTCGTCGGCGGGACTTCAACTTTATAGCTGATGTGGTGGCAG
GTTGTGCGGATTCGGTGGTCTACATTGAGATTAAGGACACCCGCCACTTT
GACTACTTCAGCGGCCAACCGATTACGGCATCGAATGGTTCCGGCTTCAT
TATTGAGCAGAACGGTCTCATCCTTACCAACGCCCATGTGGTGATCAACA
AACCACACACAATGGTACAGGTGAGGCTATCCGATGGCAGGACTTTTCCC
GCCACCATCGAGGACGTGGATCAGACATCCGATCTGGCGACTTTGCGCAT
ACAGGTGAACAATCTTTCGGTGATGCGGCTAGGCAAGAGCAGTACCCTGC
GATCCGGCGAGTGGGTTGTGGCCTTAGGCAGTCCGCTGGCCCTAAGCAAT
ACGGTGACAGCAGGCGTAATCAGTTCAACGCAGCGTGCATCTCAAGAACT
TGGCCTTCGAAACAGGGATATCAACTACCTGCAAACGGATGCTGCGATTA
CGTTTGGCAACTCCGGCGGTCCCTTGGTCAATCTGGATGGCGAGGCTATT
GGAGTTAACTCGATGAAGGTGACGGCTGGCATTAGCTTCGCAATACCCAT
TGACTATGTAAAGGTGTTTCTGGAGCGGGCGGCCGAGAAACGAAAGAAGG
GCTCGGCCTACAAGACTGGCTATCCGGTGAAGCGGTACATGGGCATCACC
ATGCTGACGCTCACACCGGATATTCTGTTCGAGCTCAAGTCACGAAGCCA
AAACATGCCCAGCAACTTAACGCACGGCGTGCTCGTGTGGAAGGTTATCG
TTGGGTCACCGGCGCACAGTGGTGGACTCCAACCCGGAGACATAGTGACC
CACATAAACAAGAAGGAGATCAAGAACTCATCGGATGTCTACGATGCCCT
GGCGGATAATAGTAAAACTCTAGATATAGTGATCCTGCGAGGTGTGAAGC
AGATGCACGTGACCATTACGCCAGAAGATCCCGCAAGCTTTCTAGACCAT
BO14651.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HtrA2-RB | 1269 | CG8464-PB | 1..1266 | 17..1282 | 6315 | 99.9 | Plus |
HtrA2-RA | 1269 | CG8464-PA | 1..1266 | 17..1282 | 6315 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HtrA2-RB | 2512 | CG8464-RB | 306..1572 | 16..1282 | 6320 | 99.9 | Plus |
HtrA2-RA | 1415 | CG8464-RA | 54..1320 | 16..1282 | 6320 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14510817..14511407 | 606..16 | 2940 | 99.8 | Minus |
3R | 32079331 | 3R | 14510236..14510755 | 1119..600 | 2600 | 100 | Minus |
3R | 32079331 | 3R | 14509989..14510153 | 1282..1118 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:52:55 has no hits.
BO14651.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:05 Download gff for
BO14651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HtrA2-RA | 1..1269 | 17..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:00 Download gff for
BO14651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HtrA2-RA | 286..1558 | 16..1291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:56 Download gff for
BO14651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HtrA2-RA | 55..1320 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:06 Download gff for
BO14651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HtrA2-RA | 286..1558 | 16..1291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:06 Download gff for
BO14651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HtrA2-RA | 55..1320 | 17..1284 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:06 Download gff for
BO14651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14509987..14510151 | 1120..1284 | 98 | <- | Minus |
3R | 14510236..14510750 | 605..1119 | 100 | <- | Minus |
3R | 14510819..14511406 | 17..604 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:56 Download gff for
BO14651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10335709..10335873 | 1120..1284 | 98 | <- | Minus |
arm_3R | 10335958..10336472 | 605..1119 | 100 | <- | Minus |
arm_3R | 10336541..10337128 | 17..604 | 99 | | Minus |
BO14651.pep Sequence
Translation from 16 to 1300
> BO14651.pep
MALRGSHRLEVIFKRCIASPVLHSHAANRRSSQLAIKEGDPNSNGNSGQY
QQNGEQKEKGWRRLVRFFVPFSLGAVVSAAIIQREDLTPTIAASKMTGRR
RDFNFIADVVAGCADSVVYIEIKDTRHFDYFSGQPITASNGSGFIIEQNG
LILTNAHVVINKPHTMVQVRLSDGRTFPATIEDVDQTSDLATLRIQVNNL
SVMRLGKSSTLRSGEWVVALGSPLALSNTVTAGVISSTQRASQELGLRNR
DINYLQTDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKV
FLERAAEKRKKGSAYKTGYPVKRYMGITMLTLTPDILFELKSRSQNMPSN
LTHGVLVWKVIVGSPAHSGGLQPGDIVTHINKKEIKNSSDVYDALADNSK
TLDIVILRGVKQMHVTITPEDPASFLDH
BO14651.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HtrA2-PB | 422 | CG8464-PB | 1..422 | 1..422 | 2140 | 100 | Plus |
HtrA2-PA | 422 | CG8464-PA | 1..422 | 1..422 | 2140 | 100 | Plus |