Clone BO14651 Report

Search the DGRC for BO14651

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:146
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptHtrA2-RA
Protein status:BO14651.pep: validated full length
Sequenced Size:1300

Clone Sequence Records

BO14651.5prime Sequence

720 bp (705 high quality bases) assembled on 2006-06-02

> BO14651.5prime
GAAGTTATCAGTCGACATGGCTTTGCGCGGTTCCCACCGCTTGGAAGTGA
TCTTCAAACGCTGCATTGCCTCCCCGGTGTTACACAGTCATGCAGCCAAT
CGGAGGAGCAGTCAACTAGCGATCAAAGAAGGCGATCCAAACAGCAATGG
TAACAGTGGGCAATATCAGCAAAATGGTGAACAAAAAGAAAAAGGCTGGA
GACGATTGGTTCGATTCTTTGTGCCCTTCTCCCTGGGCGCTGTGGTCAGT
GCGGCGATCATCCAGCGGGAAGACTTAACGCCAACGATCGCCGCTTCCAA
AATGACCGGTCGTCGGCGGGACTTCAACTTTATAGCTGATGTGGTGGCAG
GTTGTGCGGATTCGGTGGTCTACATTGAGATTAAGGACACCCGCCACTTT
GACTACTTCAGCGGCCAACCGATTACGGCATCGAATGGTTCCGGCTTCAT
TATTGAGCAGAACGGTCTCATCCTTACCAACGCCCATGTGGTGATCAACA
AACCACACACAATGGTACAGGTGAGGCTATCCGATGGCAGGACTTTTCCC
GCCACCATCGAGGACGTGGATCAGACATCCGATCTGGCGACTTTGCGCAT
ACAGGTGAACAATCTTTCGGTGATGCGGCTAGGCAAGAGCAGTACCCTGC
GATCCGGCGAGTGGGTTGTGGCCTTAGGCAGTCCGCTGGCCCTAAGCAAT
ACGGTGACAGCAGGCGTAAT

BO14651.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8464-PA 1269 CG8464-RA 1..704 17..720 3495 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
HtrA2-RB 2512 CG8464-RB 306..1010 16..720 3510 99.9 Plus
HtrA2-RA 1415 CG8464-RA 54..758 16..720 3510 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14510817..14511407 606..16 2940 99.8 Minus
3R 32079331 3R 14510635..14510755 720..600 605 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:07:41 has no hits.

BO14651.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:40 Download gff for BO14651.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8464-PA 1..704 17..720 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:49 Download gff for BO14651.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8464-PA 1..704 17..720 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:24 Download gff for BO14651.5prime
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 54..758 16..720 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:49 Download gff for BO14651.5prime
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 54..758 16..720 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:49 Download gff for BO14651.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14510635..14510750 605..720 100 <- Minus
3R 14510819..14511407 16..604 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:24 Download gff for BO14651.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10336357..10336472 605..720 100 <- Minus
arm_3R 10336541..10337129 16..604 99   Minus

BO14651.complete Sequence

1300 bp (1300 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633215

> BO14651.complete
GAAGTTATCAGTCGACATGGCTTTGCGCGGTTCCCACCGCTTGGAAGTGA
TCTTCAAACGCTGCATTGCCTCCCCGGTGTTACACAGTCATGCAGCCAAT
CGGAGGAGCAGTCAACTAGCGATCAAAGAAGGCGATCCAAACAGCAATGG
TAACAGTGGGCAATATCAGCAAAATGGTGAACAAAAAGAAAAAGGCTGGA
GACGATTGGTTCGATTCTTTGTGCCCTTCTCCCTGGGCGCTGTGGTCAGT
GCGGCGATCATCCAGCGGGAAGACTTAACGCCAACGATCGCCGCTTCCAA
AATGACCGGTCGTCGGCGGGACTTCAACTTTATAGCTGATGTGGTGGCAG
GTTGTGCGGATTCGGTGGTCTACATTGAGATTAAGGACACCCGCCACTTT
GACTACTTCAGCGGCCAACCGATTACGGCATCGAATGGTTCCGGCTTCAT
TATTGAGCAGAACGGTCTCATCCTTACCAACGCCCATGTGGTGATCAACA
AACCACACACAATGGTACAGGTGAGGCTATCCGATGGCAGGACTTTTCCC
GCCACCATCGAGGACGTGGATCAGACATCCGATCTGGCGACTTTGCGCAT
ACAGGTGAACAATCTTTCGGTGATGCGGCTAGGCAAGAGCAGTACCCTGC
GATCCGGCGAGTGGGTTGTGGCCTTAGGCAGTCCGCTGGCCCTAAGCAAT
ACGGTGACAGCAGGCGTAATCAGTTCAACGCAGCGTGCATCTCAAGAACT
TGGCCTTCGAAACAGGGATATCAACTACCTGCAAACGGATGCTGCGATTA
CGTTTGGCAACTCCGGCGGTCCCTTGGTCAATCTGGATGGCGAGGCTATT
GGAGTTAACTCGATGAAGGTGACGGCTGGCATTAGCTTCGCAATACCCAT
TGACTATGTAAAGGTGTTTCTGGAGCGGGCGGCCGAGAAACGAAAGAAGG
GCTCGGCCTACAAGACTGGCTATCCGGTGAAGCGGTACATGGGCATCACC
ATGCTGACGCTCACACCGGATATTCTGTTCGAGCTCAAGTCACGAAGCCA
AAACATGCCCAGCAACTTAACGCACGGCGTGCTCGTGTGGAAGGTTATCG
TTGGGTCACCGGCGCACAGTGGTGGACTCCAACCCGGAGACATAGTGACC
CACATAAACAAGAAGGAGATCAAGAACTCATCGGATGTCTACGATGCCCT
GGCGGATAATAGTAAAACTCTAGATATAGTGATCCTGCGAGGTGTGAAGC
AGATGCACGTGACCATTACGCCAGAAGATCCCGCAAGCTTTCTAGACCAT

BO14651.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
HtrA2-RB 1269 CG8464-PB 1..1266 17..1282 6315 99.9 Plus
HtrA2-RA 1269 CG8464-PA 1..1266 17..1282 6315 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:52:57
Subject Length Description Subject Range Query Range Score Percent Strand
HtrA2-RB 2512 CG8464-RB 306..1572 16..1282 6320 99.9 Plus
HtrA2-RA 1415 CG8464-RA 54..1320 16..1282 6320 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14510817..14511407 606..16 2940 99.8 Minus
3R 32079331 3R 14510236..14510755 1119..600 2600 100 Minus
3R 32079331 3R 14509989..14510153 1282..1118 825 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:52:55 has no hits.

BO14651.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:05 Download gff for BO14651.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 1..1269 17..1283 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:00 Download gff for BO14651.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 286..1558 16..1291 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:56 Download gff for BO14651.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 55..1320 17..1284 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:06 Download gff for BO14651.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 286..1558 16..1291 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:06 Download gff for BO14651.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 55..1320 17..1284 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:06 Download gff for BO14651.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14509987..14510151 1120..1284 98 <- Minus
3R 14510236..14510750 605..1119 100 <- Minus
3R 14510819..14511406 17..604 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:56 Download gff for BO14651.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10335709..10335873 1120..1284 98 <- Minus
arm_3R 10335958..10336472 605..1119 100 <- Minus
arm_3R 10336541..10337128 17..604 99   Minus

BO14651.pep Sequence

Translation from 16 to 1300

> BO14651.pep
MALRGSHRLEVIFKRCIASPVLHSHAANRRSSQLAIKEGDPNSNGNSGQY
QQNGEQKEKGWRRLVRFFVPFSLGAVVSAAIIQREDLTPTIAASKMTGRR
RDFNFIADVVAGCADSVVYIEIKDTRHFDYFSGQPITASNGSGFIIEQNG
LILTNAHVVINKPHTMVQVRLSDGRTFPATIEDVDQTSDLATLRIQVNNL
SVMRLGKSSTLRSGEWVVALGSPLALSNTVTAGVISSTQRASQELGLRNR
DINYLQTDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKV
FLERAAEKRKKGSAYKTGYPVKRYMGITMLTLTPDILFELKSRSQNMPSN
LTHGVLVWKVIVGSPAHSGGLQPGDIVTHINKKEIKNSSDVYDALADNSK
TLDIVILRGVKQMHVTITPEDPASFLDH

BO14651.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
HtrA2-PB 422 CG8464-PB 1..422 1..422 2140 100 Plus
HtrA2-PA 422 CG8464-PA 1..422 1..422 2140 100 Plus