BO14653.complete Sequence
2242 bp (2242 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ633216
> BO14653.complete
GAAGTTATCAGTCGACATGAATCTCTCAAGTATTAGCCGGAAGGACTTGA
CGTGTTTCGGAGTGACCACATGTGTCGTTATGGTGTGCTTCGTTCTGGTC
TCAATCTTCTCCGGATTCATGCACGAGCCCCAGAGATTCAAGACGATGTT
GGTAACCATCGTCCTGGTCTTCTTTTTCCAATATCTTATCCTGGAGCCCA
TTCGTTTCTTCATTCAGAGCATCGATTATGCCACCTGGCCGCAGGAGGAT
CCGCCCTATAGAGCGGAGGAGGGAGGGCCCACTATGGACCACATTGGCTA
CTTGAAGATCCGGCTACGCAGTCTGCGCTCCGAGCTCCTGATCTCCGAGG
GCCACACGAACGAGATGCTAAACCAGAAATACAAGCATATTGCCGGGGAC
CTGTTGCTCTATGGTTCCTACTTTATTGCCCTGATGCTGATGGTGGTGTT
GCAGGAGGATCATACTAATTACTACAATACCAACAACATGCAGCGCCTCT
TCTGGGACAATACCTCGGTCACCTTCGGCCTGTCGCAGGTGTACTTTATA
TACCAGGTACACAGCTATATGAAGATCACCCTAGTCGAGGCCTTCTACGC
GCAGAAAACCAACGGCTACGAGGGCTGGTGGGCCATGGAACAGTGGCAGA
AGATCGGTGTGGTTCGCCTGCGCCAAATGCGCCCAGTGGACTGCCATATT
GGACTGGGCAAGCCAGAGTGGGACAAGAAAACGTATGCGCCCGAGTGGCG
TCTTCCTTATCACCGGATGCATTATACGGAGAAGTTCTGGCGTATCTACG
ACCCCTTTGTACCGGCCGAGTTCGAGCCCAGTTTTCTGAATGGCCTGCTA
CTCAACTACGATCATTATGGCTATTTGCTCAACTACCCGGAAGTGGCCGG
CTACGTAGTGCTCATGATGAGCACAAAGATAAACTGCTTGAAGCAGATCG
AATACCTGAGAGACTACAGCTGGCTGGATAAAAATACTTCGGCTTTGTTT
ATCGACTTGACGATGTACAACGCCGATGCCAACCTTTTCACGTTGATCAC
TCTGCGTGTGGAGAACAGCCCATTCGGGATCCAGTTGCCCCGTGTGCATG
TGGATTCTGTGTCAATGCTGGGAAATGTGGAGACGAGAAGCAACTCTGAG
CTTCTCATACTGTTCGTGTACACAGTCTTGGTCATCTTGTTCGCCCGCGG
TGTGTTCACGAAGATCTGGCACCATCCGGCCGCTGCCCACGAGGCTTGGA
CTATGGTGGATCTGGCCATATATATACTGAACGTCTTCCTGACCGTTCTG
GCAATAATGCGCGACATCGAGACGGATGCCCTGCTGCAGATTATCGAGAC
GGCCACCAAGGGGCAGTATCTCGACTTCCAGCGTCCACTGCGCCTCCACC
AAATGCTGTTCATCGTAAAGGGCTTCCTGGTGTGCATCACCACTCTGCGG
CTGTGGAAGGTGCTCCAGTTTGCCTCCGTCTTCCAGCACTTCACGCAGAC
CCTCTTCTCTGCCTGGCGGGCAGTGGCCAGTCTGGGTGTAATTATTCTGG
TAGTCCTCATGGCCATTGGCATTACTTTGGCGGTGCCGAATGGAAACAAC
GCAGTGGTCTTCAGTCACATGGTTCAGTCCGTGGTCACCTGCATGTGGTA
CTCAATGGGTTTTAACGGTGACATTCATCCTGCGGATTTCTTCCACGGAG
GTCGTATTCTAGGGATCTTGCTCTACCTAGCACTGGTCTTCCTCCTGGCG
ATTATCTTGATGAACGTCTTCGCCTCCGTCATCTATGACTACTTCAACGA
GACGAGCAGGATCCTAAAGGAGCATTCGAATCGGTCGTCTATCACCTTCC
TGGAATTTCTGCACGTGGAGTATGCGGATCTTTTTGGCGATGCCTTTCGA
TGCCTGCGAAAGACGTACGAATCCCGTGGACATACTGTTGCCGAGAATGT
GGAACTAGAGCTAAATAGGCGGGAACTGATTAAGTTCAAAAGGGACCTCA
TAAAGAGCCCGCAGGAGTTGAAAAGGGCACTCCTGACGGAAGAGCAGCGA
AGTGCCGACTACCGGTTGCGCGGAGAGAAGTTGTTCAAGCTGATGGCTAT
CCTGAACCTCCAGGTTGAGATCCTCGAGCGAATGGTATTGGGCGACAAAG
ATGGCAAACTGCCCACACCACCTGCATCCGACTCCGATCCCGACGACATG
CCGGAAATGTATCGGAAGCGCCGTGCAAGCTTTCTAGACCAT
BO14653.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brv2-RA | 2211 | CG16793-PA | 1..2208 | 17..2224 | 10860 | 99.5 | Plus |
| brv2-RB | 2145 | CG16793-PB | 135..2142 | 217..2224 | 9875 | 99.5 | Plus |
| brv2-RB | 2145 | CG16793-PB | 1..135 | 17..151 | 660 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:39:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brv2-RA | 2367 | CG16793-RA | 28..2235 | 17..2224 | 10860 | 99.5 | Plus |
| brv2-RB | 2301 | CG16793-RB | 162..2169 | 217..2224 | 9875 | 99.5 | Plus |
| brv2-RB | 2301 | CG16793-RB | 28..162 | 17..151 | 660 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:39:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17342839..17343561 | 1649..927 | 3585 | 99.7 | Minus |
| 3L | 28110227 | 3L | 17342182..17342759 | 2224..1647 | 2860 | 99.7 | Minus |
| 3L | 28110227 | 3L | 17344129..17344669 | 557..17 | 2630 | 99.1 | Minus |
| 3L | 28110227 | 3L | 17343617..17343990 | 928..555 | 1825 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:39:50 has no hits.
BO14653.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:55:03 Download gff for
BO14653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16793-RA | 1..2211 | 17..2227 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:53 Download gff for
BO14653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16793-RA | 20..2235 | 9..2224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:15 Download gff for
BO14653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brv2-RA | 28..2235 | 17..2226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:55:03 Download gff for
BO14653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16793-RA | 20..2235 | 9..2224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:44 Download gff for
BO14653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brv2-RA | 28..2235 | 17..2226 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:44 Download gff for
BO14653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17342179..17342758 | 1648..2226 | 99 | <- | Minus |
| 3L | 17342841..17343559 | 929..1647 | 99 | <- | Minus |
| 3L | 17343617..17343988 | 557..928 | 99 | <- | Minus |
| 3L | 17344130..17344669 | 17..556 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:15 Download gff for
BO14653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17335279..17335858 | 1648..2226 | 99 | <- | Minus |
| arm_3L | 17335941..17336659 | 929..1647 | 99 | <- | Minus |
| arm_3L | 17336717..17337088 | 557..928 | 99 | <- | Minus |
| arm_3L | 17337230..17337769 | 17..556 | 99 | | Minus |
BO14653.pep Sequence
Translation from 16 to 2242
> BO14653.pep
MNLSSISRKDLTCFGVTTCVVMVCFVLVSIFSGFMHEPQRFKTMLVTIVL
VFFFQYLILEPIRFFIQSIDYATWPQEDPPYRAEEGGPTMDHIGYLKIRL
RSLRSELLISEGHTNEMLNQKYKHIAGDLLLYGSYFIALMLMVVLQEDHT
NYYNTNNMQRLFWDNTSVTFGLSQVYFIYQVHSYMKITLVEAFYAQKTNG
YEGWWAMEQWQKIGVVRLRQMRPVDCHIGLGKPEWDKKTYAPEWRLPYHR
MHYTEKFWRIYDPFVPAEFEPSFLNGLLLNYDHYGYLLNYPEVAGYVVLM
MSTKINCLKQIEYLRDYSWLDKNTSALFIDLTMYNADANLFTLITLRVEN
SPFGIQLPRVHVDSVSMLGNVETRSNSELLILFVYTVLVILFARGVFTKI
WHHPAAAHEAWTMVDLAIYILNVFLTVLAIMRDIETDALLQIIETATKGQ
YLDFQRPLRLHQMLFIVKGFLVCITTLRLWKVLQFASVFQHFTQTLFSAW
RAVASLGVIILVVLMAIGITLAVPNGNNAVVFSHMVQSVVTCMWYSMGFN
GDIHPADFFHGGRILGILLYLALVFLLAIILMNVFASVIYDYFNETSRIL
KEHSNRSSITFLEFLHVEYADLFGDAFRCLRKTYESRGHTVAENVELELN
RRELIKFKRDLIKSPQELKRALLTEEQRSADYRLRGEKLFKLMAILNLQV
EILERMVLGDKDGKLPTPPASDSDPDDMPEMYRKRRASFLDH
BO14653.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brv2-PA | 736 | CG16793-PA | 1..736 | 1..736 | 3855 | 100 | Plus |
| brv2-PB | 714 | CG16793-PB | 1..714 | 1..736 | 3713 | 97 | Plus |
| brv3-PC | 750 | CG13762-PC | 11..736 | 14..730 | 1483 | 40.9 | Plus |
| brv3-PB | 719 | CG13762-PB | 11..661 | 14..659 | 1425 | 42.6 | Plus |
| brv1-PA | 728 | CG9472-PA | 10..724 | 14..730 | 1154 | 34.9 | Plus |
