Clone Sequence Records
BO14655.5prime Sequence
766 bp (640 high quality bases) assembled on 2006-06-02
> BO14655.5prime
GAAGTTATCAGTCGACATGACCAGTTTCCGCAAGCGCACCGTGCAGAAGC
CAATCCGCGGCACCCGCACCTCGCCGCACACGGCGCAGGTGATCACCTCC
AGCGGAAATCCGTACTTGGACGTGGTCATTGGCGGCGGTCTGCCCATGGG
TTCGATCTGCCTGATCGAGGAGGATCGCTTCATGACGCACGCCAAGGTGC
TGGCCAAGTACTTTCTGGCCGAGGGTGTGATTTCCAAGCAGGAGATATTT
CTGGGCAGCCTGGACGACATTCCAGCCGAGATGCTGCGCCGTCTGCCCAG
ACCGCTGACCGACCAGGAATCGATGGAGCAAAGCGAGGTGCAAGCGCTGG
GAGATGCTGGCGCCGAAAATGGCCTAAGGATCGCCTGGCGATACAATGAT
CTGCCGCTGGTGAATTCGGAACATGCCACAGCAAAAATCGGACACCATTT
CAATCTGATGGAACAGATGGACTCCATGATGCTCTACAATGTCAAGACTA
CCTTGTGGGACGATAGCCCCAAGCATCTGGACATCGTCATTGACGAGGAG
TTCTCCAAGAGCAGCTCCCCAACCACTCCGTCGCTGGAGCAGCAGCCCGT
GGAGGATGCCCCACCGATTCCGGGCACGGAGACCGCTCCGCAGGAAGAAG
ATGCCAGCCCAGGAGGAGGAGAACTCTGCCAACAACAATAATAACAACAA
TAACAATAGCAACAGCGTGACCAGTAACACAAAAAACAGGCAGCCAGGAT
TCGCCGTTGCAGGTGT
BO14655.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6907-PA | 1314 | CG6907-RA | 1..629 | 17..645 | 3120 | 99.8 | Plus |
CG6907-PA | 1314 | CG6907-RA | 629..718 | 646..735 | 400 | 97.7 | Plus |
CG4952-PG | 3192 | dac-RG | 2556..2592 | 680..716 | 185 | 100 | Plus |
CG4952-PC | 3198 | dac-RC | 2562..2598 | 680..716 | 185 | 100 | Plus |
CG4952-PA | 3219 | dac-RA | 2583..2619 | 680..716 | 185 | 100 | Plus |
CG4952-PF | 3219 | dac-RF | 2583..2619 | 680..716 | 185 | 100 | Plus |
CG4952-PD | 3225 | dac-RD | 2589..2625 | 680..716 | 185 | 100 | Plus |
CG4952-PE | 3246 | dac-RE | 2610..2646 | 680..716 | 185 | 100 | Plus |
CG4952-PB | 3246 | dac-RB | 2610..2646 | 680..716 | 185 | 100 | Plus |
CG6907-PA | 1314 | CG6907-RA | 714..748 | 732..766 | 175 | 100 | Plus |
CG3754-PA | 1935 | CG3754-RA | 1230..1263 | 683..716 | 145 | 97 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:08:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6907-RB | 1512 | CG6907-RB | 113..860 | 17..766 | 3655 | 99.3 | Plus |
CG6907-RA | 1671 | CG6907-RA | 272..1019 | 17..766 | 3655 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5524410..5525157 | 17..766 | 3605 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:08:34 has no hits.
BO14655.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:45 Download gff for
BO14655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-PA | 1..748 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:56 Download gff for
BO14655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-PA | 1..748 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:57:17 Download gff for
BO14655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-RA | 272..1019 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:56:14 Download gff for
BO14655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-RA | 272..1019 | 17..766 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:56:14 Download gff for
BO14655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5524410..5525157 | 17..766 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:57:17 Download gff for
BO14655.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5524410..5525157 | 17..766 | 99 | | Plus |
BO14655.complete Sequence
1345 bp (1345 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633217
> BO14655.complete
GAAGTTATCAGTCGACATGACCAGTTTCCGCAAGCGCACCGTGCAGAAGC
CAATCCGCGGCACCCGCACCTCGCCGCACACGGCGCAGGTGATCACCTCC
AGCGGAAATCCGTACTTGGACGTGGTCATTGGCGGCGGTCTGCCCATGGG
TTCGATCTGCCTGATCGAGGAGGATCGCTTCATGACGCACGCCAAGGTGC
TGGCCAAGTACTTTCTGGCCGAGGGTGTGATTTCCAAGCAGGAGATATTT
CTGGGCAGCCTGGACGACATTCCAGCCGAGATGCTGCGCCGTCTGCCCAG
ACCGCTGACCGACCAGGAATCGATGGAGCAAAGCGAGGTGCAAGCGCTGG
GAGATGCTGGCGCCGAAAATGGCCTAAGGATCGCCTGGCGATACAATGAT
CTGCCGCTGGTGAATTCGGAACATGCCACAGCAAAAATCGGACACCATTT
CAATCTGATGGAACAGATGGACTCCATGATGCTCTACAATGTCAAGACTA
CCTTGTGGGACGATAGCCCCAAGCATCTGGACATCGTCATTGACGAGGAG
TTCTCCAAGAGCAGCTCCCCAACCACTCCGTCGCTGGAGCAGCAGCCCGT
GGAGGATGCCCCACCGATTCCGGGCACGGAGACCGCTCCGCAGGAGAAGA
TGCCAGCCCAGGAGGAGGAGAACTCTGCCAACAACAATAATAACAACAAT
AACAATAGCAGCAGCGTGACCAGTAGCACAAAAACAGGCAGCCAGGATTC
GCCGTTGCAGGTGTTCCACAACCCTCGGTACAAAGGACTGCTCAACGATA
TTCAACAGCTGCTGCGTAACGAGAGCTTCGTCGCTGGGACCAAGAATAAC
CTGTGCCGCGTCTGCCTGACCTCGTTGGGATCGCCGCTGTGGTACGACGA
ACACTTCGGCGAGGATCTGATCAAGTTTCTCACACTGCTGATGGCCAGTG
TGCGGAACTGCAACTCCGTGTGCCTGATCACGATGCCCATGCACCTGATT
GCCAAGTACGATGCCAGCCTAGTGCCCAAGATCCGCCAACTGGTGGACTA
TGCCATCGAACTGGAGTCGTTTGCCGGTTCGGAGCGTGAAACGCACCCAG
CCTTCAAGGAGTACAGTGGCCTGCTCCATTTGCACAAGATGTCGGCCATC
AATACGCTGGCCGTGCACATGCCGGAAACCCCGGACTTGGCCTTCAAGTT
GCGCCGCAAGAAGTTCATCATCGAAAAGTTCCATCTGCCCCCGGAGCTGC
AGGAGTCATCTGCCAAGCCGGACAATTGCATCTCTGGTCTACTGAGCAAT
TCCAATGCCACAGCCTCGCTGGATTTCGCAAGCTTTCTAGACCAT
BO14655.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:03:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6907-RB | 1314 | CG6907-PB | 1..1311 | 17..1327 | 6540 | 99.9 | Plus |
CG6907-RA | 1314 | CG6907-PA | 1..1311 | 17..1327 | 6540 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:03:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6907-RB | 1512 | CG6907-RB | 113..1423 | 17..1327 | 6540 | 99.9 | Plus |
CG6907-RA | 1671 | CG6907-RA | 272..1582 | 17..1327 | 6540 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5524410..5525720 | 17..1327 | 6540 | 99.9 | Plus |
Blast to na_te.dros performed 2014-11-27 13:03:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5648..5713 | 678..742 | 129 | 68.2 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 19..46 | 680..707 | 113 | 89.3 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 22..49 | 680..707 | 113 | 89.3 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7057..7084 | 680..707 | 113 | 89.3 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7060..7087 | 680..707 | 113 | 89.3 | Plus |
BO14655.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:06 Download gff for
BO14655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-RA | 1..1314 | 17..1328 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:01 Download gff for
BO14655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-RA | 272..1592 | 17..1340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:47:42 Download gff for
BO14655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-RA | 272..1582 | 17..1329 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:07 Download gff for
BO14655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-RA | 272..1592 | 17..1340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:04 Download gff for
BO14655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-RA | 272..1582 | 17..1329 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:04 Download gff for
BO14655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5524410..5525720 | 17..1329 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:47:42 Download gff for
BO14655.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5524410..5525720 | 17..1329 | 99 | | Plus |
BO14655.pep Sequence
Translation from 16 to 1345
> BO14655.pep
MTSFRKRTVQKPIRGTRTSPHTAQVITSSGNPYLDVVIGGGLPMGSICLI
EEDRFMTHAKVLAKYFLAEGVISKQEIFLGSLDDIPAEMLRRLPRPLTDQ
ESMEQSEVQALGDAGAENGLRIAWRYNDLPLVNSEHATAKIGHHFNLMEQ
MDSMMLYNVKTTLWDDSPKHLDIVIDEEFSKSSSPTTPSLEQQPVEDAPP
IPGTETAPQEKMPAQEEENSANNNNNNNNNSSSVTSSTKTGSQDSPLQVF
HNPRYKGLLNDIQQLLRNESFVAGTKNNLCRVCLTSLGSPLWYDEHFGED
LIKFLTLLMASVRNCNSVCLITMPMHLIAKYDASLVPKIRQLVDYAIELE
SFAGSERETHPAFKEYSGLLHLHKMSAINTLAVHMPETPDLAFKLRRKKF
IIEKFHLPPELQESSAKPDNCISGLLSNSNATASLDFASFLDH
BO14655.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6907-PB | 437 | CG6907-PB | 1..437 | 1..437 | 2269 | 100 | Plus |
CG6907-PA | 437 | CG6907-PA | 1..437 | 1..437 | 2269 | 100 | Plus |