Clone Sequence Records
BO14661.3prime Sequence
629 bp (628 high quality bases) assembled on 2006-06-02
> BO14661.3prime
ATGGTCTAGAAAGCTTGCCTGAATGACGCACTTCTTCTGCTTCTTCTGCG
ATCGACAGTGGCCGCAGGAGTTCGGGTTCTGACTCTGGTTGCCGTGGTGC
GGGCGATAGGGTTGCGGTCCTCTGGGCACGTTCTGGCCACAGGTCACGTT
GGCGTAGGTGGGCTGGGCCATCGCCTGCTGCTGCTGTTGGTTGGGAGGCG
GGGCCACCGGCGGGGCGCAGTGGCACTCCGTCTTGGCGGGCTTCTCGCGA
CAGGTGCAGCGGGTCTCCAGGGCAGGCGGCTGCTCCCGCGGACCCCGGCT
GCACGTGATGTGGTCCGCCTGAACGGATGGCGGAGGTGGCCGGCTACGGT
TCTGAGTGCACGTGCACTCCACGGTGGGGGCTCCCCGGCTCTGGTAGAGG
CTGCATGCGGCGGGATCGCCCGGCGGCTGCGTCGAGTTGACCTGGCACCC
GCCTGCTCCCTGGCCCCGCGGACCCGGATAGGGACAGCTGTCCGGCTGCT
GCTGCGGCTGGTGGGCGTACGAGGGGGGTGGCCTGTGGGGCGGCTGCTGG
GGGGGTGGGGCTCCGCCGCTGGTGCCGCATGGACAGTTGTTGCACTTGCC
ACACGGAGACGACATGTCGACTGATAACT
BO14661.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31542-PA | 600 | CG31542-RA | 1..597 | 615..19 | 2960 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34277-RD | 1803 | CG34277-RD | 53..649 | 615..19 | 2970 | 99.8 | Minus |
CG31542-RC | 1803 | CG31542-RC | 53..649 | 615..19 | 2970 | 99.8 | Minus |
CG31542-RA | 832 | CG31542-RA | 53..649 | 615..19 | 2970 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5369655..5370247 | 611..19 | 2950 | 99.8 | Minus |
Blast to na_te.dros performed 2015-02-10 18:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 1194..1276 | 13..92 | 110 | 62.7 | Plus |
BO14661.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:47 Download gff for
BO14661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31542-PA | 1..600 | 16..615 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:00 Download gff for
BO14661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31542-PA | 1..600 | 16..615 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:47:48 Download gff for
BO14661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34277-RD | 53..655 | 12..615 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:48:42 Download gff for
BO14661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31542-RA | 53..655 | 12..615 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:48:42 Download gff for
BO14661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5369652..5370253 | 12..616 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:47:48 Download gff for
BO14661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1195374..1195975 | 12..616 | 98 | | Minus |
BO14661.5prime Sequence
629 bp (629 high quality bases) assembled on 2006-06-16
> BO14661.5prime
GAAGTTATCAGTCGACATGTCGTCTCCGTGTGGCAAGTGCAACAACTGTC
CCTGCGGCACCAGCGGCGGAGCCCCACCCCCCCAGCAGCCGCCCCACAGG
CCACCCCCCTCGTACGCCCACCAGCCGCAGCAGCAGCCGGACAGCTGTCC
CTATCCGGGTCCGCGGGGCCAGGGAGCAGGCGGGTGCCAGGTCAACTCGA
CGCAGCCGCCGGGCGATCCCGCCGCATGCAGCCTCTACCAGAGCCGGGGA
GCCCCCACCGTGGAGTGCACGTGCACTCAGAACCGTAGCCGGCCACCTCC
GCCATCCGTTCAGGCGGACCACATCACGTGCAGCCGGGGTCCGCGGGAGC
AGCCGCCTGCCCTGGAGACCCGCTGCACCTGTCGCGAGAAGCCCGCCAAG
ACGGAGTGCCACTGCGCCCCGCCGGTGGCCCCGCCTCCCAACCAACAGCA
GCAGCAGGCGATGGCCCAGCCCACCTACGCCAACGTGACCTGTGGCCAGA
ACGTGCCCAGAGGACCGCAACCCTATCGCCCGCACCACGGCAACCAGAGT
CAGAACCCGAACTCCTGCGGCCACTGTCGATCGCAGAAGAAGCAGAAGAA
GTGCGTCATTCAGGCAAGCTTTCTAGACC
BO14661.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31542-PA | 600 | CG31542-RA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34277-RD | 1803 | CG34277-RD | 53..649 | 17..613 | 2985 | 100 | Plus |
CG31542-RC | 1803 | CG31542-RC | 53..649 | 17..613 | 2985 | 100 | Plus |
CG31542-RA | 832 | CG31542-RA | 53..649 | 17..613 | 2985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5369655..5370247 | 21..613 | 2965 | 100 | Plus |
Blast to na_te.dros performed 2015-02-09 22:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 1194..1276 | 619..540 | 110 | 62.7 | Minus |
BO14661.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:48 Download gff for
BO14661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31542-PA | 1..600 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:01 Download gff for
BO14661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31542-PA | 1..600 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:22:08 Download gff for
BO14661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34277-RD | 53..655 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:46:55 Download gff for
BO14661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31542-RA | 53..655 | 17..620 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:46:55 Download gff for
BO14661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5369652..5370253 | 16..620 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:22:08 Download gff for
BO14661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1195374..1195975 | 16..620 | 99 | | Plus |
BO14661.complete Sequence
631 bp (631 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633218
> BO14661.complete
GAAGTTATCAGTCGACATGTCGTCTCCGTGTGGCAAGTGCAACAACTGTC
CCTGCGGCACCAGCGGCGGAGCCCCACCCCCCCAGCAGCCGCCCCACAGG
CCACCCCCCTCGTACGCCCACCAGCCGCAGCAGCAGCCGGACAGCTGTCC
CTATCCGGGTCCGCGGGGCCAGGGAGCAGGCGGGTGCCAGGTCAACTCGA
CGCAGCCGCCGGGCGATCCCGCCGCATGCAGCCTCTACCAGAGCCGGGGA
GCCCCCACCGTGGAGTGCACGTGCACTCAGAACCGTAGCCGGCCACCTCC
GCCATCCGTTCAGGCGGACCACATCACGTGCAGCCGGGGTCCGCGGGAGC
AGCCGCCTGCCCTGGAGACCCGCTGCACCTGTCGCGAGAAGCCCGCCAAG
ACGGAGTGCCACTGCGCCCCGCCGGTGGCCCCGCCTCCCAACCAACAGCA
GCAGCAGGCGATGGCCCAGCCCACCTACGCCAACGTGACCTGTGGCCAGA
ACGTGCCCAGAGGACCGCAACCCTATCGCCCGCACCACGGCAACCAGAGT
CAGAACCCGAACTCCTGCGGCCACTGTCGATCGCAGAAGAAGCAGAAGAA
GTGCGTCATTCAGGCAAGCTTTCTAGACCAT
BO14661.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31542-RC | 600 | CG31542-PC | 1..597 | 17..613 | 2985 | 100 | Plus |
CG31542-RA | 600 | CG31542-PA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34277-RD | 1803 | CG34277-RD | 53..649 | 17..613 | 2985 | 100 | Plus |
CG31542-RC | 1803 | CG31542-RC | 53..649 | 17..613 | 2985 | 100 | Plus |
CG31542-RA | 832 | CG31542-RA | 53..649 | 17..613 | 2985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5369655..5370247 | 21..613 | 2965 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 1194..1276 | 619..540 | 110 | 62.7 | Minus |
BO14661.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:08 Download gff for
BO14661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31542-RA | 1..600 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:03 Download gff for
BO14661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31542-RA | 53..655 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:38 Download gff for
BO14661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34277-RD | 53..649 | 17..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:08 Download gff for
BO14661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31542-RA | 53..655 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:10 Download gff for
BO14661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31542-RA | 53..649 | 17..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:10 Download gff for
BO14661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5369653..5370247 | 17..615 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:38 Download gff for
BO14661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1195375..1195969 | 17..615 | 99 | | Plus |
BO14661.pep Sequence
Translation from 16 to 631
> BO14661.pep
MSSPCGKCNNCPCGTSGGAPPPQQPPHRPPPSYAHQPQQQPDSCPYPGPR
GQGAGGCQVNSTQPPGDPAACSLYQSRGAPTVECTCTQNRSRPPPPSVQA
DHITCSRGPREQPPALETRCTCREKPAKTECHCAPPVAPPPNQQQQQAMA
QPTYANVTCGQNVPRGPQPYRPHHGNQSQNPNSCGHCRSQKKQKKCVIQA
SFLDH
BO14661.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31542-PC | 199 | CG31542-PC | 1..199 | 1..199 | 1164 | 100 | Plus |
CG31542-PA | 199 | CG31542-PA | 1..199 | 1..199 | 1164 | 100 | Plus |