Clone BO14661 Report

Search the DGRC for BO14661

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:146
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG31542-RA
Protein status:BO14661.pep: validated full length
Sequenced Size:631

Clone Sequence Records

BO14661.3prime Sequence

629 bp (628 high quality bases) assembled on 2006-06-02

> BO14661.3prime
ATGGTCTAGAAAGCTTGCCTGAATGACGCACTTCTTCTGCTTCTTCTGCG
ATCGACAGTGGCCGCAGGAGTTCGGGTTCTGACTCTGGTTGCCGTGGTGC
GGGCGATAGGGTTGCGGTCCTCTGGGCACGTTCTGGCCACAGGTCACGTT
GGCGTAGGTGGGCTGGGCCATCGCCTGCTGCTGCTGTTGGTTGGGAGGCG
GGGCCACCGGCGGGGCGCAGTGGCACTCCGTCTTGGCGGGCTTCTCGCGA
CAGGTGCAGCGGGTCTCCAGGGCAGGCGGCTGCTCCCGCGGACCCCGGCT
GCACGTGATGTGGTCCGCCTGAACGGATGGCGGAGGTGGCCGGCTACGGT
TCTGAGTGCACGTGCACTCCACGGTGGGGGCTCCCCGGCTCTGGTAGAGG
CTGCATGCGGCGGGATCGCCCGGCGGCTGCGTCGAGTTGACCTGGCACCC
GCCTGCTCCCTGGCCCCGCGGACCCGGATAGGGACAGCTGTCCGGCTGCT
GCTGCGGCTGGTGGGCGTACGAGGGGGGTGGCCTGTGGGGCGGCTGCTGG
GGGGGTGGGGCTCCGCCGCTGGTGCCGCATGGACAGTTGTTGCACTTGCC
ACACGGAGACGACATGTCGACTGATAACT

BO14661.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31542-PA 600 CG31542-RA 1..597 615..19 2960 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG34277-RD 1803 CG34277-RD 53..649 615..19 2970 99.8 Minus
CG31542-RC 1803 CG31542-RC 53..649 615..19 2970 99.8 Minus
CG31542-RA 832 CG31542-RA 53..649 615..19 2970 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5369655..5370247 611..19 2950 99.8 Minus
Blast to na_te.dros performed 2015-02-10 18:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 1194..1276 13..92 110 62.7 Plus

BO14661.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:47 Download gff for BO14661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31542-PA 1..600 16..615 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:00 Download gff for BO14661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31542-PA 1..600 16..615 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:47:48 Download gff for BO14661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG34277-RD 53..655 12..615 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:48:42 Download gff for BO14661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31542-RA 53..655 12..615 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:48:42 Download gff for BO14661.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5369652..5370253 12..616 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:47:48 Download gff for BO14661.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1195374..1195975 12..616 98   Minus

BO14661.5prime Sequence

629 bp (629 high quality bases) assembled on 2006-06-16

> BO14661.5prime
GAAGTTATCAGTCGACATGTCGTCTCCGTGTGGCAAGTGCAACAACTGTC
CCTGCGGCACCAGCGGCGGAGCCCCACCCCCCCAGCAGCCGCCCCACAGG
CCACCCCCCTCGTACGCCCACCAGCCGCAGCAGCAGCCGGACAGCTGTCC
CTATCCGGGTCCGCGGGGCCAGGGAGCAGGCGGGTGCCAGGTCAACTCGA
CGCAGCCGCCGGGCGATCCCGCCGCATGCAGCCTCTACCAGAGCCGGGGA
GCCCCCACCGTGGAGTGCACGTGCACTCAGAACCGTAGCCGGCCACCTCC
GCCATCCGTTCAGGCGGACCACATCACGTGCAGCCGGGGTCCGCGGGAGC
AGCCGCCTGCCCTGGAGACCCGCTGCACCTGTCGCGAGAAGCCCGCCAAG
ACGGAGTGCCACTGCGCCCCGCCGGTGGCCCCGCCTCCCAACCAACAGCA
GCAGCAGGCGATGGCCCAGCCCACCTACGCCAACGTGACCTGTGGCCAGA
ACGTGCCCAGAGGACCGCAACCCTATCGCCCGCACCACGGCAACCAGAGT
CAGAACCCGAACTCCTGCGGCCACTGTCGATCGCAGAAGAAGCAGAAGAA
GTGCGTCATTCAGGCAAGCTTTCTAGACC

BO14661.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31542-PA 600 CG31542-RA 1..597 17..613 2985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG34277-RD 1803 CG34277-RD 53..649 17..613 2985 100 Plus
CG31542-RC 1803 CG31542-RC 53..649 17..613 2985 100 Plus
CG31542-RA 832 CG31542-RA 53..649 17..613 2985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5369655..5370247 21..613 2965 100 Plus
Blast to na_te.dros performed 2015-02-09 22:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 1194..1276 619..540 110 62.7 Minus

BO14661.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:48 Download gff for BO14661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31542-PA 1..600 17..616 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:01 Download gff for BO14661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31542-PA 1..600 17..616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:22:08 Download gff for BO14661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34277-RD 53..655 17..620 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:46:55 Download gff for BO14661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31542-RA 53..655 17..620 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:46:55 Download gff for BO14661.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5369652..5370253 16..620 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:22:08 Download gff for BO14661.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1195374..1195975 16..620 99   Plus

BO14661.complete Sequence

631 bp (631 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633218

> BO14661.complete
GAAGTTATCAGTCGACATGTCGTCTCCGTGTGGCAAGTGCAACAACTGTC
CCTGCGGCACCAGCGGCGGAGCCCCACCCCCCCAGCAGCCGCCCCACAGG
CCACCCCCCTCGTACGCCCACCAGCCGCAGCAGCAGCCGGACAGCTGTCC
CTATCCGGGTCCGCGGGGCCAGGGAGCAGGCGGGTGCCAGGTCAACTCGA
CGCAGCCGCCGGGCGATCCCGCCGCATGCAGCCTCTACCAGAGCCGGGGA
GCCCCCACCGTGGAGTGCACGTGCACTCAGAACCGTAGCCGGCCACCTCC
GCCATCCGTTCAGGCGGACCACATCACGTGCAGCCGGGGTCCGCGGGAGC
AGCCGCCTGCCCTGGAGACCCGCTGCACCTGTCGCGAGAAGCCCGCCAAG
ACGGAGTGCCACTGCGCCCCGCCGGTGGCCCCGCCTCCCAACCAACAGCA
GCAGCAGGCGATGGCCCAGCCCACCTACGCCAACGTGACCTGTGGCCAGA
ACGTGCCCAGAGGACCGCAACCCTATCGCCCGCACCACGGCAACCAGAGT
CAGAACCCGAACTCCTGCGGCCACTGTCGATCGCAGAAGAAGCAGAAGAA
GTGCGTCATTCAGGCAAGCTTTCTAGACCAT

BO14661.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31542-RC 600 CG31542-PC 1..597 17..613 2985 100 Plus
CG31542-RA 600 CG31542-PA 1..597 17..613 2985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG34277-RD 1803 CG34277-RD 53..649 17..613 2985 100 Plus
CG31542-RC 1803 CG31542-RC 53..649 17..613 2985 100 Plus
CG31542-RA 832 CG31542-RA 53..649 17..613 2985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5369655..5370247 21..613 2965 100 Plus
Blast to na_te.dros performed 2014-11-27 13:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 1194..1276 619..540 110 62.7 Minus

BO14661.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:08 Download gff for BO14661.complete
Subject Subject Range Query Range Percent Splice Strand
CG31542-RA 1..600 17..616 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:03 Download gff for BO14661.complete
Subject Subject Range Query Range Percent Splice Strand
CG31542-RA 53..655 17..620 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:38 Download gff for BO14661.complete
Subject Subject Range Query Range Percent Splice Strand
CG34277-RD 53..649 17..615 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:08 Download gff for BO14661.complete
Subject Subject Range Query Range Percent Splice Strand
CG31542-RA 53..655 17..620 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:10 Download gff for BO14661.complete
Subject Subject Range Query Range Percent Splice Strand
CG31542-RA 53..649 17..615 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:10 Download gff for BO14661.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5369653..5370247 17..615 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:38 Download gff for BO14661.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1195375..1195969 17..615 99   Plus

BO14661.pep Sequence

Translation from 16 to 631

> BO14661.pep
MSSPCGKCNNCPCGTSGGAPPPQQPPHRPPPSYAHQPQQQPDSCPYPGPR
GQGAGGCQVNSTQPPGDPAACSLYQSRGAPTVECTCTQNRSRPPPPSVQA
DHITCSRGPREQPPALETRCTCREKPAKTECHCAPPVAPPPNQQQQQAMA
QPTYANVTCGQNVPRGPQPYRPHHGNQSQNPNSCGHCRSQKKQKKCVIQA
SFLDH

BO14661.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31542-PC 199 CG31542-PC 1..199 1..199 1164 100 Plus
CG31542-PA 199 CG31542-PA 1..199 1..199 1164 100 Plus