Clone Sequence Records
BO14667.3prime Sequence
527 bp (527 high quality bases) assembled on 2006-06-02
> BO14667.3prime
ATGGTCTAGAAAGCTTGCCGTCTCCATCATCATGGTCACAAAGCGAACGT
AGTCGATTTTCAGTTCCGTGTTGGCGTCGGCATCACGTATCATTTCCTCG
ATCTCGTCCTCTTCCATTTCATCGCCATATTCAGTCATTATCTGACGGAA
CTCATTCTCGTGTATAAAGCCAGATCCATCTTTGTCGAAGACTTTGAACG
CGAGGATAACTTCATCTTCGACAGTCAAATTCTCGTACCGTTTCGACATG
ATGTATAGGAAATCACTGAGATAAAGCTCGCCGGATCCATCCGTATCAAT
TTCGGTGATATAATCCTGTATCTCGTTTTCCGGCGGGTTGTGGGCCACGG
CTCGCAGGCAATCTCTCAATAACTTGATCGGAATGACCTTGGCATTATCG
TCGTCGAAGAGGGCGAAGGCCGCCTCACAATCCTTGAGCTGTTCATCATT
CAGCGTGTGGGTATGAACTGTTCGTACCTCCGGAGGTGGACTACTGAAAT
CAAAGTCATCCATGTCGACTGATAACT
BO14667.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5024-PA | 498 | CG5024-RA | 1..495 | 513..19 | 2400 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5024-RB | 643 | CG5024-RB | 109..604 | 514..19 | 2435 | 99.4 | Minus |
CG5024-RA | 680 | CG5024-RA | 109..604 | 514..19 | 2435 | 99.4 | Minus |
Acam-RB | 1224 | CG17769-RB | 284..426 | 305..163 | 205 | 77.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25811204..25811699 | 514..19 | 2435 | 99.4 | Minus |
3R | 32079331 | 3R | 25812194..25812336 | 305..163 | 205 | 76.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:37:19 has no hits.
BO14667.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:55 Download gff for
BO14667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5024-PA | 1..498 | 15..513 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:10 Download gff for
BO14667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5024-PA | 1..498 | 15..513 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:51:34 Download gff for
BO14667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5024-RA | 109..607 | 15..514 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:50:00 Download gff for
BO14667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5024-RA | 109..607 | 15..514 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:50:00 Download gff for
BO14667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25811204..25811702 | 15..514 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:51:34 Download gff for
BO14667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21636926..21637424 | 15..514 | 99 | | Minus |
BO14667.5prime Sequence
527 bp (527 high quality bases) assembled on 2006-06-16
> BO14667.5prime
GAAGTTATCAGTCGACATGGATGACTTTGATTTCAGTAGTCCACCTCCGG
AGGTACGAACAGTTCATACCCACACGCTGAATGATGAACAGCTCAAGGAT
TGTGAGGCGGCCTTCGCCCTCTTCGACGACGATAATGCCAAGGTCATTCC
GATCAAGTTATTGAGAGATTGCCTGCGAGCCGTGGCCCACAACCCGCCGG
AAAACGAGATACAGGATTATATCACCGAAATTGATACGGATGGATCCGGC
GAGCTTTATCTCAGTGATTTCCTATACATCATGTCGAAACGGTACGAGAA
TTTGACTGTCGAAGATGAAGTTATCCTCGCGTTCAAAGTCTTCGACAAAG
ATGGATCTGGCTTTATACACGAGAATGAGTTCCGTCAGATAATGACTGAA
TATGGCGATGAAATGGAAGAGGACGAGATCGAGGAAATGATACGTGATGC
CGACGCCAACACGGAACTGAAAATCGACTACGTTCGCTTTGTGACCATGA
TGATGGAGACGGCAAGCTTTCTAGACC
BO14667.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5024-PA | 498 | CG5024-RA | 1..495 | 17..511 | 2400 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5024-RB | 643 | CG5024-RB | 109..604 | 16..511 | 2435 | 99.4 | Plus |
CG5024-RA | 680 | CG5024-RA | 109..604 | 16..511 | 2435 | 99.4 | Plus |
Acam-RB | 1224 | CG17769-RB | 284..426 | 225..367 | 205 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25811204..25811699 | 16..511 | 2435 | 99.4 | Plus |
3R | 32079331 | 3R | 25812194..25812336 | 225..367 | 205 | 76.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:41:37 has no hits.
BO14667.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:56 Download gff for
BO14667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5024-PA | 1..498 | 17..515 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:11 Download gff for
BO14667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5024-PA | 1..498 | 17..515 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:10:29 Download gff for
BO14667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5024-RA | 109..607 | 16..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:16 Download gff for
BO14667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5024-RA | 109..607 | 16..515 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:16 Download gff for
BO14667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25811204..25811702 | 16..515 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:10:29 Download gff for
BO14667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21636926..21637424 | 16..515 | 99 | | Plus |
BO14667.complete Sequence
529 bp (529 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ638731
> BO14667.complete
GAAGTTATCAGTCGACATGGATGACTTTGATTTCAGTAGTCCACCTCCGG
AGGTACGAACAGTTCATACCCACACGCTGAATGATGAACAGCTCAAGGAT
TGTGAGGCGGCCTTCGCCCTCTTCGACGACGATAATGCCAAGGTCATTCC
GATCAAGTTATTGAGAGATTGCCTGCGAGCCGTGGCCCACAACCCGCCGG
AAAACGAGATACAGGATTATATCACCGAAATTGATACGGATGGATCCGGC
GAGCTTTATCTCAGTGATTTCCTATACATCATGTCGAAACGGTACGAGAA
TTTGACTGTCGAAGATGAAGTTATCCTCGCGTTCAAAGTCTTCGACAAAG
ATGGATCTGGCTTTATACACGAGAATGAGTTCCGTCAGATAATGACTGAA
TATGGCGATGAAATGGAAGAGGACGAGATCGAGGAAATGATACGTGATGC
CGACGCCAACACGGAACTGAAAATCGACTACGTTCGCTTTGTGACCATGA
TGATGGAGACGGCAAGCTTTCTAGACCAT
BO14667.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:41:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5024-RB | 498 | CG5024-PB | 1..495 | 17..511 | 2430 | 99.4 | Plus |
CG5024-RA | 498 | CG5024-PA | 1..495 | 17..511 | 2430 | 99.4 | Plus |
CG17770-RA | 495 | CG17770-PA | 206..348 | 225..367 | 205 | 76.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5024-RB | 643 | CG5024-RB | 109..604 | 16..511 | 2435 | 99.4 | Plus |
CG5024-RA | 680 | CG5024-RA | 109..604 | 16..511 | 2435 | 99.4 | Plus |
Acam-RB | 1224 | CG17769-RB | 284..426 | 225..367 | 205 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25811204..25811699 | 16..511 | 2435 | 99.4 | Plus |
3R | 32079331 | 3R | 25812194..25812336 | 225..367 | 205 | 76.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:41:13 has no hits.
BO14667.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:10 Download gff for
BO14667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5024-RA | 1..498 | 17..515 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:06 Download gff for
BO14667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5024-RA | 109..607 | 16..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:07 Download gff for
BO14667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5024-RA | 110..604 | 17..513 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:10 Download gff for
BO14667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5024-RA | 109..607 | 16..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:22 Download gff for
BO14667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5024-RA | 110..604 | 17..513 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:22 Download gff for
BO14667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25811205..25811699 | 17..513 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:07 Download gff for
BO14667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21636927..21637421 | 17..513 | 98 | | Plus |
BO14667.pep Sequence
Translation from 16 to 529
> BO14667.pep
MDDFDFSSPPPEVRTVHTHTLNDEQLKDCEAAFALFDDDNAKVIPIKLLR
DCLRAVAHNPPENEIQDYITEIDTDGSGELYLSDFLYIMSKRYENLTVED
EVILAFKVFDKDGSGFIHENEFRQIMTEYGDEMEEDEIEEMIRDADANTE
LKIDYVRFVTMMMETASFLDH
BO14667.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5024-PB | 165 | CG5024-PB | 1..165 | 1..165 | 864 | 100 | Plus |
CG5024-PA | 165 | CG5024-PA | 1..165 | 1..165 | 864 | 100 | Plus |
CG17770-PA | 164 | CG17770-PA | 2..164 | 3..165 | 516 | 58.9 | Plus |
Cam-PD | 149 | CG8472-PD | 5..146 | 21..162 | 317 | 41.5 | Plus |
Cam-PC | 149 | CG8472-PC | 5..146 | 21..162 | 317 | 41.5 | Plus |