Clone BO14670 Report

Search the DGRC for BO14670

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:146
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptTim17b1-RA
Protein status:BO14670.pep: validated full length
Sequenced Size:571

Clone Sequence Records

BO14670.3prime Sequence

569 bp (569 high quality bases) assembled on 2006-06-16

> BO14670.3prime
ATGGTCTAGAAAGCTTGCCAATGCCGAAGAGTCAATCTCTCCATAAGTCG
CTGCGAGTGGAGAAACGCCCTTTTGCTGCCGTAAAAGCTCCTGCTTATAC
CGTTGCTGCCGCTCCACGGGCGACACCTGGCGGTAGGAATCCGCCGAATA
ATGGGACACCACAATGCCCACGCCCTCTATTAGGGCCAATAGAGCCCCGC
CCACCAAGGCACTACTGAGCATGGAGGTTAGTCCAGTTCTAGCAGCAAGA
ATGCCCCCGGTGGTTGCTCCACTAATTATGGCGTTCCACGGGTCCTCCTT
CTTCCGGAAGTAAACCAGTGAGCAGTCGATGGCGCTGAAGGTAGCGCCCC
ACACCGCAAAGTTACCACCCACCAGGCCGGATCGAGCCCGTACCGCCGCC
AATCCTCCGCTCAATCGGTATCCCAGGCCGGAGGGGGCGTTTCGAAAGCC
CTTGATCGCCTGGAAGGCTCCTCCGCCCAAGGCGCCCATTGCGAAGGCTC
CACCACAATCCTCGACAATGCGAAAGGGACAAGGCTCCCGACCGTACTCC
GCCATGTCGACTGATAACT

BO14670.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1158-PA 540 Tim17b1-RA 1..537 555..19 2685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b1-RA 785 CG1158-RA 45..584 558..19 2700 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5300189..5300514 558..233 1630 100 Minus
3R 32079331 3R 5300704..5300901 234..37 990 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:04:10 has no hits.

BO14670.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:57 Download gff for BO14670.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1158-PA 1..540 18..555 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:13 Download gff for BO14670.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1158-PA 1..540 18..555 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:28:53 Download gff for BO14670.3prime
Subject Subject Range Query Range Percent Splice Strand
Tim17b1-RA 35..584 19..569 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:48:09 Download gff for BO14670.3prime
Subject Subject Range Query Range Percent Splice Strand
Tim17b1-RA 35..584 19..569 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:48:09 Download gff for BO14670.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5300179..5300513 234..569 98 -> Minus
3R 5300705..5300901 37..233 100 -> Minus
3R 5300968..5300984 20..36 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:28:53 Download gff for BO14670.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1126690..1126706 20..36 100 -> Minus
arm_3R 1125901..1126235 234..569 98 -> Minus
arm_3R 1126427..1126623 37..233 100 -> Minus

BO14670.5prime Sequence

569 bp (569 high quality bases) assembled on 2006-06-16

> BO14670.5prime
GAAGTTATCAGTCGACATGGCGGAGTACGGTCGGGAGCCTTGTCCCTTTC
GCATTGTCGAGGATTGTGGTGGAGCCTTCGCAATGGGCGCCTTGGGCGGA
GGAGCCTTCCAGGCGATCAAGGGCTTTCGAAACGCCCCCTCCGGCCTGGG
ATACCGATTGAGCGGAGGATTGGCGGCGGTACGGGCTCGATCCGGCCTGG
TGGGTGGTAACTTTGCGGTGTGGGGCGCTACCTTCAGCGCCATCGACTGC
TCACTGGTTTACTTCCGGAAGAAGGAGGACCCGTGGAACGCCATAATTAG
TGGAGCAACCACCGGGGGCATTCTTGCTGCTAGAACTGGACTAACCTCCA
TGCTCAGTAGTGCCTTGGTGGGCGGGGCTCTATTGGCCCTAATAGAGGGC
GTGGGCATTGTGGTGTCCCATTATTCGGCGGATTCCTACCGCCAGGTGTC
GCCCGTGGAGCGGCAGCAACGGTATAAGCAGGAGCTTTTACGGCAGCAAA
AGGGCGTTTCTCCACTCGCAGCGACTTATGGAGAGATTGACTCTTCGGCA
TTGGCAAGCTTTCTAGACC

BO14670.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1158-PA 540 Tim17b1-RA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b1-RA 785 CG1158-RA 45..584 14..553 2700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5300189..5300514 14..339 1630 100 Plus
3R 32079331 3R 5300704..5300901 338..535 990 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:11:11 has no hits.

BO14670.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:58 Download gff for BO14670.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1158-PA 1..540 17..554 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:35 Download gff for BO14670.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1158-PA 1..540 17..554 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:49 Download gff for BO14670.5prime
Subject Subject Range Query Range Percent Splice Strand
Tim17b1-RA 38..584 7..553 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:09 Download gff for BO14670.5prime
Subject Subject Range Query Range Percent Splice Strand
Tim17b1-RA 38..584 7..553 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:09 Download gff for BO14670.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5300182..5300513 7..338 99 -> Plus
3R 5300705..5300901 339..535 100 -> Plus
3R 5300968..5300984 536..552 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:49 Download gff for BO14670.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1125904..1126235 7..338 99 -> Plus
arm_3R 1126427..1126623 339..535 100 -> Plus
arm_3R 1126690..1126706 536..552 100 -> Plus

BO14670.complete Sequence

571 bp (571 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633220

> BO14670.complete
GAAGTTATCAGTCGACATGGCGGAGTACGGTCGGGAGCCTTGTCCCTTTC
GCATTGTCGAGGATTGTGGTGGAGCCTTCGCAATGGGCGCCTTGGGCGGA
GGAGCCTTCCAGGCGATCAAGGGCTTTCGAAACGCCCCCTCCGGCCTGGG
ATACCGATTGAGCGGAGGATTGGCGGCGGTACGGGCTCGATCCGGCCTGG
TGGGTGGTAACTTTGCGGTGTGGGGCGCTACCTTCAGCGCCATCGACTGC
TCACTGGTTTACTTCCGGAAGAAGGAGGACCCGTGGAACGCCATAATTAG
TGGAGCAACCACCGGGGGCATTCTTGCTGCTAGAACTGGACTAACCTCCA
TGCTCAGTAGTGCCTTGGTGGGCGGGGCTCTATTGGCCCTAATAGAGGGC
GTGGGCATTGTGGTGTCCCATTATTCGGCGGATTCCTACCGCCAGGTGTC
GCCCGTGGAGCGGCAGCAACGGTATAAGCAGGAGCTTTTACGGCAGCAAA
AGGGCGTTTCTCCACTCGCAGCGACTTATGGAGAGATTGACTCTTCGGCA
TTGGCAAGCTTTCTAGACCAT

BO14670.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b1-RA 540 CG1158-PA 1..537 17..553 2685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b1-RA 785 CG1158-RA 45..584 14..553 2700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5300189..5300514 14..339 1630 100 Plus
3R 32079331 3R 5300704..5300901 338..535 990 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:48:17 has no hits.

BO14670.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:11 Download gff for BO14670.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b1-RA 1..540 17..554 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:08 Download gff for BO14670.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b1-RA 38..584 7..553 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:17 Download gff for BO14670.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b1-RA 48..584 17..555 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:11 Download gff for BO14670.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b1-RA 38..584 7..553 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:34 Download gff for BO14670.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b1-RA 48..584 17..555 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:34 Download gff for BO14670.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5300192..5300513 17..338 100 -> Plus
3R 5300705..5300901 339..535 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:17 Download gff for BO14670.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1125914..1126235 17..338 100 -> Plus
arm_3R 1126427..1126623 339..535 100 -> Plus

BO14670.pep Sequence

Translation from 16 to 571

> BO14670.pep
MAEYGREPCPFRIVEDCGGAFAMGALGGGAFQAIKGFRNAPSGLGYRLSG
GLAAVRARSGLVGGNFAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTG
GILAARTGLTSMLSSALVGGALLALIEGVGIVVSHYSADSYRQVSPVERQ
QRYKQELLRQQKGVSPLAATYGEIDSSALASFLDH

BO14670.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b1-PA 179 CG1158-PA 1..179 1..179 911 100 Plus
Tim17b-PB 173 CG40451-PB 1..146 1..146 545 67.8 Plus
Tim17b-PA 173 CG40451-PA 1..146 1..146 545 67.8 Plus
CG1724-PA 185 CG1724-PA 1..146 1..146 522 63 Plus
Tim17b2-PC 176 CG15257-PC 1..146 1..146 516 60.3 Plus