Clone Sequence Records
BO14670.3prime Sequence
569 bp (569 high quality bases) assembled on 2006-06-16
> BO14670.3prime
ATGGTCTAGAAAGCTTGCCAATGCCGAAGAGTCAATCTCTCCATAAGTCG
CTGCGAGTGGAGAAACGCCCTTTTGCTGCCGTAAAAGCTCCTGCTTATAC
CGTTGCTGCCGCTCCACGGGCGACACCTGGCGGTAGGAATCCGCCGAATA
ATGGGACACCACAATGCCCACGCCCTCTATTAGGGCCAATAGAGCCCCGC
CCACCAAGGCACTACTGAGCATGGAGGTTAGTCCAGTTCTAGCAGCAAGA
ATGCCCCCGGTGGTTGCTCCACTAATTATGGCGTTCCACGGGTCCTCCTT
CTTCCGGAAGTAAACCAGTGAGCAGTCGATGGCGCTGAAGGTAGCGCCCC
ACACCGCAAAGTTACCACCCACCAGGCCGGATCGAGCCCGTACCGCCGCC
AATCCTCCGCTCAATCGGTATCCCAGGCCGGAGGGGGCGTTTCGAAAGCC
CTTGATCGCCTGGAAGGCTCCTCCGCCCAAGGCGCCCATTGCGAAGGCTC
CACCACAATCCTCGACAATGCGAAAGGGACAAGGCTCCCGACCGTACTCC
GCCATGTCGACTGATAACT
BO14670.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1158-PA | 540 | Tim17b1-RA | 1..537 | 555..19 | 2685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim17b1-RA | 785 | CG1158-RA | 45..584 | 558..19 | 2700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5300189..5300514 | 558..233 | 1630 | 100 | Minus |
3R | 32079331 | 3R | 5300704..5300901 | 234..37 | 990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:04:10 has no hits.
BO14670.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:57 Download gff for
BO14670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1158-PA | 1..540 | 18..555 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:13 Download gff for
BO14670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1158-PA | 1..540 | 18..555 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:28:53 Download gff for
BO14670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b1-RA | 35..584 | 19..569 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:48:09 Download gff for
BO14670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b1-RA | 35..584 | 19..569 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:48:09 Download gff for
BO14670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5300179..5300513 | 234..569 | 98 | -> | Minus |
3R | 5300705..5300901 | 37..233 | 100 | -> | Minus |
3R | 5300968..5300984 | 20..36 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:28:53 Download gff for
BO14670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1126690..1126706 | 20..36 | 100 | -> | Minus |
arm_3R | 1125901..1126235 | 234..569 | 98 | -> | Minus |
arm_3R | 1126427..1126623 | 37..233 | 100 | -> | Minus |
BO14670.5prime Sequence
569 bp (569 high quality bases) assembled on 2006-06-16
> BO14670.5prime
GAAGTTATCAGTCGACATGGCGGAGTACGGTCGGGAGCCTTGTCCCTTTC
GCATTGTCGAGGATTGTGGTGGAGCCTTCGCAATGGGCGCCTTGGGCGGA
GGAGCCTTCCAGGCGATCAAGGGCTTTCGAAACGCCCCCTCCGGCCTGGG
ATACCGATTGAGCGGAGGATTGGCGGCGGTACGGGCTCGATCCGGCCTGG
TGGGTGGTAACTTTGCGGTGTGGGGCGCTACCTTCAGCGCCATCGACTGC
TCACTGGTTTACTTCCGGAAGAAGGAGGACCCGTGGAACGCCATAATTAG
TGGAGCAACCACCGGGGGCATTCTTGCTGCTAGAACTGGACTAACCTCCA
TGCTCAGTAGTGCCTTGGTGGGCGGGGCTCTATTGGCCCTAATAGAGGGC
GTGGGCATTGTGGTGTCCCATTATTCGGCGGATTCCTACCGCCAGGTGTC
GCCCGTGGAGCGGCAGCAACGGTATAAGCAGGAGCTTTTACGGCAGCAAA
AGGGCGTTTCTCCACTCGCAGCGACTTATGGAGAGATTGACTCTTCGGCA
TTGGCAAGCTTTCTAGACC
BO14670.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:04:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1158-PA | 540 | Tim17b1-RA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim17b1-RA | 785 | CG1158-RA | 45..584 | 14..553 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5300189..5300514 | 14..339 | 1630 | 100 | Plus |
3R | 32079331 | 3R | 5300704..5300901 | 338..535 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:11:11 has no hits.
BO14670.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:58 Download gff for
BO14670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1158-PA | 1..540 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:35 Download gff for
BO14670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1158-PA | 1..540 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:49 Download gff for
BO14670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b1-RA | 38..584 | 7..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:20:09 Download gff for
BO14670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b1-RA | 38..584 | 7..553 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:20:09 Download gff for
BO14670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5300182..5300513 | 7..338 | 99 | -> | Plus |
3R | 5300705..5300901 | 339..535 | 100 | -> | Plus |
3R | 5300968..5300984 | 536..552 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:49 Download gff for
BO14670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1125904..1126235 | 7..338 | 99 | -> | Plus |
arm_3R | 1126427..1126623 | 339..535 | 100 | -> | Plus |
arm_3R | 1126690..1126706 | 536..552 | 100 | -> | Plus |
BO14670.complete Sequence
571 bp (571 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633220
> BO14670.complete
GAAGTTATCAGTCGACATGGCGGAGTACGGTCGGGAGCCTTGTCCCTTTC
GCATTGTCGAGGATTGTGGTGGAGCCTTCGCAATGGGCGCCTTGGGCGGA
GGAGCCTTCCAGGCGATCAAGGGCTTTCGAAACGCCCCCTCCGGCCTGGG
ATACCGATTGAGCGGAGGATTGGCGGCGGTACGGGCTCGATCCGGCCTGG
TGGGTGGTAACTTTGCGGTGTGGGGCGCTACCTTCAGCGCCATCGACTGC
TCACTGGTTTACTTCCGGAAGAAGGAGGACCCGTGGAACGCCATAATTAG
TGGAGCAACCACCGGGGGCATTCTTGCTGCTAGAACTGGACTAACCTCCA
TGCTCAGTAGTGCCTTGGTGGGCGGGGCTCTATTGGCCCTAATAGAGGGC
GTGGGCATTGTGGTGTCCCATTATTCGGCGGATTCCTACCGCCAGGTGTC
GCCCGTGGAGCGGCAGCAACGGTATAAGCAGGAGCTTTTACGGCAGCAAA
AGGGCGTTTCTCCACTCGCAGCGACTTATGGAGAGATTGACTCTTCGGCA
TTGGCAAGCTTTCTAGACCAT
BO14670.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:48:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim17b1-RA | 540 | CG1158-PA | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim17b1-RA | 785 | CG1158-RA | 45..584 | 14..553 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5300189..5300514 | 14..339 | 1630 | 100 | Plus |
3R | 32079331 | 3R | 5300704..5300901 | 338..535 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:48:17 has no hits.
BO14670.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:11 Download gff for
BO14670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b1-RA | 1..540 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:08 Download gff for
BO14670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b1-RA | 38..584 | 7..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:17 Download gff for
BO14670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b1-RA | 48..584 | 17..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:11 Download gff for
BO14670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b1-RA | 38..584 | 7..553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:34 Download gff for
BO14670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b1-RA | 48..584 | 17..555 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:34 Download gff for
BO14670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5300192..5300513 | 17..338 | 100 | -> | Plus |
3R | 5300705..5300901 | 339..535 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:17 Download gff for
BO14670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1125914..1126235 | 17..338 | 100 | -> | Plus |
arm_3R | 1126427..1126623 | 339..535 | 100 | -> | Plus |
BO14670.pep Sequence
Translation from 16 to 571
> BO14670.pep
MAEYGREPCPFRIVEDCGGAFAMGALGGGAFQAIKGFRNAPSGLGYRLSG
GLAAVRARSGLVGGNFAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTG
GILAARTGLTSMLSSALVGGALLALIEGVGIVVSHYSADSYRQVSPVERQ
QRYKQELLRQQKGVSPLAATYGEIDSSALASFLDH
BO14670.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim17b1-PA | 179 | CG1158-PA | 1..179 | 1..179 | 911 | 100 | Plus |
Tim17b-PB | 173 | CG40451-PB | 1..146 | 1..146 | 545 | 67.8 | Plus |
Tim17b-PA | 173 | CG40451-PA | 1..146 | 1..146 | 545 | 67.8 | Plus |
CG1724-PA | 185 | CG1724-PA | 1..146 | 1..146 | 522 | 63 | Plus |
Tim17b2-PC | 176 | CG15257-PC | 1..146 | 1..146 | 516 | 60.3 | Plus |