Clone Sequence Records
BO14674.3prime Sequence
808 bp (754 high quality bases) assembled on 2006-06-16
> BO14674.3prime
ATGGTCTAGAAAGCTTGCGGAATTCGTAAATCGTTGGTATATTTTTGGTA
CAATCAAGTTAAATATAAATCGCAGAATCATAAAAACTAGAATTAGGCCA
AAAACTACGCCTATAACCAAAGTGGTCCACTCTAAAGGATTCAGGCTGTT
GGTAGTGGGTAAAACGTGTGTGTTGATGCCACTCCAACCACCATTCTCGT
TAATCCACGGAACCAGCTCATCTTCGATCACCTCGGAAACGCTCTCCATC
AACTTGGGCAAGTATTCCGGATGTCCTTGGCGTACACAATCAACGGACAG
CCCACCGGCGATGGCGAACAGAGAGATCACCTTGCTCCACGTAATCTCCA
CCCGGAAGAGCTCGCGACCAACGGCTCCCAAAAGCAAGCTCACAGCATCC
GGAGTATGGAACTCACCACCCGGATTCCGACAAATCTGACGAGCTACTCC
GTTGTATATCCGGGGATGCATGCGCTCCAGTTCATCGCCCAGCACTTGGA
CCGCTGGAAACACATCGCGCACAATGCCCATGGAGGTGGAGCCCAGTATG
CTACGTATGCGCTGCAGTCCCAGCTTTTTGTTGAACAAACCAGATCTTCT
GAGGCGTCTCTTGATATAATGACCGCACAGGCAACGACCCTGAGAAATGA
TATCCTGCGCTGGAATCTGTGCCGCCTTCCAGCCAATCGTGTAGGAGAGT
TTCCTGGTTACGGCATCGCTGACATTGCTCAACCTACGCCTCGTGGTCTC
CTTGGGACACCACCCACCTCCAGTAGTGATGCGGAATGTAGTGTGGCTGG
AAAACTGA
BO14674.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8238-PA | 900 | Buffy-RA | 158..897 | 758..19 | 3625 | 99.5 | Minus |
CG8238-PA | 900 | Buffy-RA | 107..157 | 808..758 | 230 | 98 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Buffy-RA | 1038 | CG8238-RA | 245..1035 | 808..19 | 3870 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:01:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11688019..11688328 | 493..184 | 1535 | 99.7 | Minus |
2R | 25286936 | 2R | 11688389..11688554 | 184..19 | 830 | 100 | Minus |
2R | 25286936 | 2R | 11687567..11687737 | 808..639 | 760 | 97.7 | Minus |
2R | 25286936 | 2R | 11687811..11687959 | 641..493 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:01:41 has no hits.
BO14674.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:33:59 Download gff for
BO14674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-PA | 108..900 | 15..807 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:16 Download gff for
BO14674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8238-PA | 108..900 | 15..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:47:36 Download gff for
BO14674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-RA | 246..1038 | 15..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:30:51 Download gff for
BO14674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-RA | 246..1038 | 15..807 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:30:51 Download gff for
BO14674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11687568..11687736 | 640..807 | 97 | -> | Minus |
2R | 11687813..11687959 | 493..639 | 100 | -> | Minus |
2R | 11688020..11688328 | 184..492 | 99 | -> | Minus |
2R | 11688390..11688562 | 10..183 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:47:36 Download gff for
BO14674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7575318..7575464 | 493..639 | 100 | -> | Minus |
arm_2R | 7575073..7575241 | 640..807 | 97 | -> | Minus |
arm_2R | 7575525..7575833 | 184..492 | 99 | -> | Minus |
arm_2R | 7575895..7576067 | 10..183 | 97 | | Minus |
BO14674.5prime Sequence
871 bp (734 high quality bases) assembled on 2006-06-16
> BO14674.5prime
GAAGTTATCAGTCGACATGCCCGGCACCTCGTATCCCACGAATAACGATA
ATTTCAGCAACGGATTTCCGATGGCCACCACACAAAGTGAGCGCCTCTTG
CAGGCCCAGAATCGAAGAAAGTTCAGTTTTCCAGCCACACTACATTCCGC
ATCACTACTGGAGGTGGGTGGTGGTCCCAAGGAGACCACGAGGCGTAGGT
TGAGCAATGTCAGCGATGCCGTAACCAGGAAACTCTCCTACACGATTGGC
TGGAAGGCGGCACAGATTCCAGCGCAGGATATCATTTCTCAGGGTCGTTG
CCTGTGCGGTCATTATATCAAGAGACGCCTCAGAAGATCTGGTTTGTTCA
ACAAAAAGCTGGGACTGCAGCGCATACGTAGCATACTGGGCTCCACCTCC
ATGGGCATTGTGCGCGATGTGTTTCCAGCGGTCCAAGTGCTGGGCGATGA
ACTGGAGCGCATGCATCCCCGGATATACAACGGAGTAGCTCGTCAGATTT
GTCGGAATCCGGGTGGTGAGTTCCATACTCCGGATGCTGTGAGCTTGCTT
TTGGGAGCCGTTGGTCGCGAGCTCTTCCGGGTGGAGATTACGTGGAGCAA
GGTGATCTCTCTGTTCGCCATCGCCGGTGGGCTGTCCGTTGATTGTGTAC
GCCAAGGACATCCGGAATACTTGCCCAAGTTGATGGAGAGCGTTTCCGAG
GTGATCGAAGATGAGCTGGTTCCGTGGATTAACGAGAATGGTGGTTGGAG
TGGCATCAACACACACGTTTTACCCACTACCAACAGCCTGAATCCTTTAG
AGTGGACCACTTTGGTTATAGGCGTAGTTTTTGGCCTAAATCTAGTTTTT
ATGATTCTGCGATTTATATTT
BO14674.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8238-PA | 900 | Buffy-RA | 1..855 | 17..871 | 4150 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:56:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Buffy-RA | 1038 | CG8238-RA | 137..993 | 15..871 | 4210 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11688019..11688328 | 439..748 | 1535 | 99.7 | Plus |
2R | 25286936 | 2R | 11687459..11687737 | 15..293 | 1350 | 98.9 | Plus |
2R | 25286936 | 2R | 11687811..11687959 | 291..439 | 745 | 100 | Plus |
2R | 25286936 | 2R | 11688389..11688512 | 748..871 | 605 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:56:06 has no hits.
BO14674.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:34:00 Download gff for
BO14674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:17 Download gff for
BO14674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8238-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:09:19 Download gff for
BO14674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-RA | 137..993 | 15..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:00:14 Download gff for
BO14674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-RA | 137..993 | 15..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:00:14 Download gff for
BO14674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11687459..11687736 | 15..292 | 98 | -> | Plus |
2R | 11687813..11687959 | 293..439 | 100 | -> | Plus |
2R | 11688020..11688328 | 440..748 | 99 | -> | Plus |
2R | 11688390..11688512 | 749..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:09:19 Download gff for
BO14674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7575318..7575464 | 293..439 | 100 | -> | Plus |
arm_2R | 7574964..7575241 | 15..292 | 98 | -> | Plus |
arm_2R | 7575525..7575833 | 440..748 | 99 | -> | Plus |
arm_2R | 7575895..7576017 | 749..871 | 99 | | Plus |
BO14674.complete Sequence
931 bp (931 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633221
> BO14674.complete
GAAGTTATCAGTCGACATGCCCGGCACCTCGTATCCCACGAATAACGATA
ATTTCAGCAACGGATTTCCGATGGCCACCACACAAAGTGAGCGCCTCTTG
CAGGCCCAGAATCGAAGAAAGTTCAGTTTTCCAGCCACACTACATTCCGC
ATCACTACTGGAGGTGGGTGGTGGTCCCAAGGAGACCACGAGGCGTAGGT
TGAGCAATGTCAGCGATGCCGTAACCAGGAAACTCTCCTACACGATTGGC
TGGAAGGCGGCACAGATTCCAGCGCAGGATATCATTTCTCAGGGTCGTTG
CCTGTGCGGTCATTATATCAAGAGACGCCTCAGAAGATCTGGTTTGTTCA
ACAAAAAGCTGGGACTGCAGCGCATACGTAGCATACTGGGCTCCACCTCC
ATGGGCATTGTGCGCGATGTGTTTCCAGCGGTCCAAGTGCTGGGCGATGA
ACTGGAGCGCATGCATCCCCGGATATACAACGGAGTAGCTCGTCAGATTT
GTCGGAATCCGGGTGGTGAGTTCCATACTCCGGATGCTGTGAGCTTGCTT
TTGGGAGCCGTTGGTCGCGAGCTCTTCCGGGTGGAGATTACGTGGAGCAA
GGTGATCTCTCTGTTCGCCATCGCCGGTGGGCTGTCCGTTGATTGTGTAC
GCCAAGGACATCCGGAATACTTGCCCAAGTTGATGGAGAGCGTTTCCGAG
GTGATCGAAGATGAGCTGGTTCCGTGGATTAACGAGAATGGTGGTTGGAG
TGGCATCAACACACACGTTTTACCCACTACCAACAGCCTGAATCCTTTAG
AGTGGACCACTTTGGTTATAGGCGTAGTTTTTGGCCTAATTCTAGTTTTT
ATGATTCTGCGATTTATATTTAACTTGATTGTACCAAAAATATACCAACG
ATTTACGAATTCCGCAAGCTTTCTAGACCAT
BO14674.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:12:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Buffy-RA | 900 | CG8238-PA | 1..897 | 17..913 | 4425 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:12:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Buffy-RA | 1038 | CG8238-RA | 137..1035 | 15..913 | 4435 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11688019..11688328 | 439..748 | 1535 | 99.7 | Plus |
2R | 25286936 | 2R | 11687459..11687737 | 15..293 | 1350 | 98.9 | Plus |
2R | 25286936 | 2R | 11688389..11688554 | 748..913 | 830 | 100 | Plus |
2R | 25286936 | 2R | 11687811..11687959 | 291..439 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:12:52 has no hits.
BO14674.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:55 Download gff for
BO14674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-RA | 1..900 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:01 Download gff for
BO14674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-RA | 156..1062 | 15..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:50:37 Download gff for
BO14674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-RA | 139..1035 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:55 Download gff for
BO14674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-RA | 156..1062 | 15..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:54:29 Download gff for
BO14674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-RA | 139..1035 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:54:29 Download gff for
BO14674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11688390..11688554 | 749..915 | 98 | | Plus |
2R | 11687461..11687736 | 17..292 | 98 | -> | Plus |
2R | 11687813..11687959 | 293..439 | 100 | -> | Plus |
2R | 11688020..11688328 | 440..748 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:50:37 Download gff for
BO14674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7575895..7576059 | 749..915 | 98 | | Plus |
arm_2R | 7574966..7575241 | 17..292 | 98 | -> | Plus |
arm_2R | 7575318..7575464 | 293..439 | 100 | -> | Plus |
arm_2R | 7575525..7575833 | 440..748 | 99 | -> | Plus |
BO14674.pep Sequence
Translation from 16 to 931
> BO14674.pep
MPGTSYPTNNDNFSNGFPMATTQSERLLQAQNRRKFSFPATLHSASLLEV
GGGPKETTRRRLSNVSDAVTRKLSYTIGWKAAQIPAQDIISQGRCLCGHY
IKRRLRRSGLFNKKLGLQRIRSILGSTSMGIVRDVFPAVQVLGDELERMH
PRIYNGVARQICRNPGGEFHTPDAVSLLLGAVGRELFRVEITWSKVISLF
AIAGGLSVDCVRQGHPEYLPKLMESVSEVIEDELVPWINENGGWSGINTH
VLPTTNSLNPLEWTTLVIGVVFGLILVFMILRFIFNLIVPKIYQRFTNSA
SFLDH
BO14674.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Buffy-PA | 299 | CG8238-PA | 1..299 | 1..299 | 1553 | 100 | Plus |
Debcl-PA | 300 | CG33134-PA | 96..291 | 88..284 | 521 | 47.7 | Plus |