Clone BO14676 Report

Search the DGRC for BO14676

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:146
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptUcp4C-RA
Protein status:BO14676.pep: validated full length
Sequenced Size:1039

Clone Sequence Records

BO14676.5prime Sequence

725 bp (688 high quality bases) assembled on 2006-06-02

> BO14676.5prime
GAAGTTATCAGTCGACATGGACAAAGCTGAACGCGACTACTGGCATCTTC
GATCCTTGGAAATCGAAGAGGAGCCGCGATTTCCGCCAACAAACGTCGCT
GATCCACTAACCGCACGCAATCTGTTCCAGCTCTACGTCAACACCTTCAT
TGGAGCCAATCTGGCCGAGTCGTGTGTCTTCCCATTGGACGTGGCCAAGA
CCCGGATGCAGGTAGATGGCGAGCAGGCCAAGAAGACGGGTAAAGCGATG
CCAACTTTCCGGGCAACTCTTACCAACATGATCCGAGTGGAGGGATTCAA
GTCGCTCTACGCCGGCTTCTCGGCAATGGTGACCCGAAACTTTATCTTCA
ACTCGTTACGTGTTGTTCTCTACGACGTTTTCCGGCGCCCTTTTCTCTAC
CAGAACGAGCGGAACGAGGAAGTGCTCAAGATCTACATGGCGCTGGGATG
CAGCTTCACCGCAGGCTGCATTGCCCAGGCACTGGCCAATCCCTTTGACA
TCGTCAAGGTGCGAATGCAGACGGAAGGACGCCGCCGCCAGCTGGGCTAT
GATGTGCGGGTGAACAGCATGGTGCAGGCCTTCGTGGACATCTACCGCCG
TGGCGGACTGCCCAGTATGTGGAAGGGTGTAGGGCCCAGCTGCATGCGTG
CCTGCCTGATGACGACCGGCGATGTGGGCAGCTACGATATCAGTAAGCGC
ACCTTCAAGCGCCTGCTGGACTTGG

BO14676.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9064-PA 1008 Ucp4C-RA 1..709 17..725 3545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
Ucp4C-RA 1196 CG9064-RA 118..826 17..725 3545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5968683..5969391 17..725 3545 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:42:15 has no hits.

BO14676.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:34:03 Download gff for BO14676.5prime
Subject Subject Range Query Range Percent Splice Strand
Ucp4C-PA 1..709 17..725 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:21 Download gff for BO14676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9064-PA 1..709 17..725 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:49:27 Download gff for BO14676.5prime
Subject Subject Range Query Range Percent Splice Strand
Ucp4C-RA 105..826 5..725 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:36 Download gff for BO14676.5prime
Subject Subject Range Query Range Percent Splice Strand
Ucp4C-RA 105..826 5..725 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:36 Download gff for BO14676.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5968670..5969391 5..725 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:49:27 Download gff for BO14676.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5968670..5969391 5..725 99   Plus

BO14676.complete Sequence

1039 bp (1039 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633223

> BO14676.complete
GAAGTTATCAGTCGACATGGACAAAGCTGAACGCGACTACTGGCATCTTC
GATCCTTGGAAATCGAAGAGGAGCCGCGATTTCCGCCAACAAACGTCGCT
GATCCACTAACCGCACGCAATCTGTTCCAGCTCTACGTCAACACCTTCAT
TGGAGCCAATCTGGCCGAGTCGTGTGTCTTCCCATTGGACGTGGCCAAGA
CCCGGATGCAGGTAGATGGCGAGCAGGCCAAGAAGACGGGTAAAGCGATG
CCAACTTTCCGGGCAACTCTTACCAACATGATCCGAGTGGAGGGATTCAA
GTCGCTCTACGCCGGCTTCTCGGCAATGGTGACCCGAAACTTTATCTTCA
ACTCGTTACGTGTTGTTCTCTACGACGTTTTCCGGCGCCCTTTTCTCTAC
CAGAACGAGCGGAACGAGGAAGTGCTCAAGATCTACATGGCGCTGGGATG
CAGCTTCACCGCAGGCTGCATTGCCCAGGCACTGGCCAATCCCTTTGACA
TCGTCAAGGTGCGAATGCAGACGGAAGGACGCCGCCGCCAGCTGGGCTAT
GATGTGCGGGTGAACAGCATGGTGCAGGCCTTCGTGGACATCTACCGCCG
TGGCGGACTGCCCAGTATGTGGAAGGGTGTAGGGCCCAGCTGCATGCGTG
CCTGCCTGATGACGACCGGCGATGTGGGCAGCTACGATATCAGTAAGCGC
ACCTTCAAGCGCCTGCTGGACTTGGAGGAAGGCCTGCCACTGCGTTTCGT
GTCTTCCATGTGCGCCGGACTAACGGCATCCGTGCTCAGCACGCCGGCGG
ACGTGATCAAGTCGCGGATGATGAACCAGCCGGTGGACGAGAGCGGCAAG
AATCTGTACTACAAGAACTCCCTCGACTGCGTTAGGAAGCTGGTCAGGGA
GGAGGGTGTCCTCACGTTATATAAGGGCCTAATGCCCACTTGGTTTCGGC
TGGGACCGTTCTCAGTGCTCTTTTGGCTGTCCGTCGAGCAGCTGCGTCAG
TGGGAAGGCCAGAGTGGATTTGCAAGCTTTCTAGACCAT

BO14676.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
Ucp4C-RA 1008 CG9064-PA 1..1005 17..1021 5025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:19:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ucp4C-RA 1196 CG9064-RA 118..1122 17..1021 5025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5968683..5969687 17..1021 5025 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:19:41 has no hits.

BO14676.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:56 Download gff for BO14676.complete
Subject Subject Range Query Range Percent Splice Strand
Ucp4C-RA 1..1008 17..1022 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:47 Download gff for BO14676.complete
Subject Subject Range Query Range Percent Splice Strand
Ucp4C-RA 74..1091 5..1021 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:32 Download gff for BO14676.complete
Subject Subject Range Query Range Percent Splice Strand
Ucp4C-RA 118..1122 17..1023 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:56 Download gff for BO14676.complete
Subject Subject Range Query Range Percent Splice Strand
Ucp4C-RA 74..1091 5..1021 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:57 Download gff for BO14676.complete
Subject Subject Range Query Range Percent Splice Strand
Ucp4C-RA 118..1122 17..1023 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:57 Download gff for BO14676.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5968683..5969687 17..1023 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:32 Download gff for BO14676.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5968683..5969687 17..1023 99   Plus

BO14676.pep Sequence

Translation from 16 to 1039

> BO14676.pep
MDKAERDYWHLRSLEIEEEPRFPPTNVADPLTARNLFQLYVNTFIGANLA
ESCVFPLDVAKTRMQVDGEQAKKTGKAMPTFRATLTNMIRVEGFKSLYAG
FSAMVTRNFIFNSLRVVLYDVFRRPFLYQNERNEEVLKIYMALGCSFTAG
CIAQALANPFDIVKVRMQTEGRRRQLGYDVRVNSMVQAFVDIYRRGGLPS
MWKGVGPSCMRACLMTTGDVGSYDISKRTFKRLLDLEEGLPLRFVSSMCA
GLTASVLSTPADVIKSRMMNQPVDESGKNLYYKNSLDCVRKLVREEGVLT
LYKGLMPTWFRLGPFSVLFWLSVEQLRQWEGQSGFASFLDH

BO14676.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
Ucp4C-PA 335 CG9064-PA 1..335 1..335 1747 100 Plus
Ucp4B-PA 337 CG18340-PA 38..337 38..335 651 41.3 Plus
Ucp4A-PB 340 CG6492-PB 44..340 40..335 621 40 Plus
Ucp4A-PA 340 CG6492-PA 44..340 40..335 621 40 Plus
Bmcp-PB 303 CG7314-PB 20..303 50..329 399 31.5 Plus