Clone Sequence Records
BO14676.5prime Sequence
725 bp (688 high quality bases) assembled on 2006-06-02
> BO14676.5prime
GAAGTTATCAGTCGACATGGACAAAGCTGAACGCGACTACTGGCATCTTC
GATCCTTGGAAATCGAAGAGGAGCCGCGATTTCCGCCAACAAACGTCGCT
GATCCACTAACCGCACGCAATCTGTTCCAGCTCTACGTCAACACCTTCAT
TGGAGCCAATCTGGCCGAGTCGTGTGTCTTCCCATTGGACGTGGCCAAGA
CCCGGATGCAGGTAGATGGCGAGCAGGCCAAGAAGACGGGTAAAGCGATG
CCAACTTTCCGGGCAACTCTTACCAACATGATCCGAGTGGAGGGATTCAA
GTCGCTCTACGCCGGCTTCTCGGCAATGGTGACCCGAAACTTTATCTTCA
ACTCGTTACGTGTTGTTCTCTACGACGTTTTCCGGCGCCCTTTTCTCTAC
CAGAACGAGCGGAACGAGGAAGTGCTCAAGATCTACATGGCGCTGGGATG
CAGCTTCACCGCAGGCTGCATTGCCCAGGCACTGGCCAATCCCTTTGACA
TCGTCAAGGTGCGAATGCAGACGGAAGGACGCCGCCGCCAGCTGGGCTAT
GATGTGCGGGTGAACAGCATGGTGCAGGCCTTCGTGGACATCTACCGCCG
TGGCGGACTGCCCAGTATGTGGAAGGGTGTAGGGCCCAGCTGCATGCGTG
CCTGCCTGATGACGACCGGCGATGTGGGCAGCTACGATATCAGTAAGCGC
ACCTTCAAGCGCCTGCTGGACTTGG
BO14676.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9064-PA | 1008 | Ucp4C-RA | 1..709 | 17..725 | 3545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ucp4C-RA | 1196 | CG9064-RA | 118..826 | 17..725 | 3545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:42:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5968683..5969391 | 17..725 | 3545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:42:15 has no hits.
BO14676.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:34:03 Download gff for
BO14676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ucp4C-PA | 1..709 | 17..725 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:21 Download gff for
BO14676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9064-PA | 1..709 | 17..725 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:49:27 Download gff for
BO14676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ucp4C-RA | 105..826 | 5..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:36 Download gff for
BO14676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ucp4C-RA | 105..826 | 5..725 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:36 Download gff for
BO14676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5968670..5969391 | 5..725 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:49:27 Download gff for
BO14676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5968670..5969391 | 5..725 | 99 | | Plus |
BO14676.complete Sequence
1039 bp (1039 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633223
> BO14676.complete
GAAGTTATCAGTCGACATGGACAAAGCTGAACGCGACTACTGGCATCTTC
GATCCTTGGAAATCGAAGAGGAGCCGCGATTTCCGCCAACAAACGTCGCT
GATCCACTAACCGCACGCAATCTGTTCCAGCTCTACGTCAACACCTTCAT
TGGAGCCAATCTGGCCGAGTCGTGTGTCTTCCCATTGGACGTGGCCAAGA
CCCGGATGCAGGTAGATGGCGAGCAGGCCAAGAAGACGGGTAAAGCGATG
CCAACTTTCCGGGCAACTCTTACCAACATGATCCGAGTGGAGGGATTCAA
GTCGCTCTACGCCGGCTTCTCGGCAATGGTGACCCGAAACTTTATCTTCA
ACTCGTTACGTGTTGTTCTCTACGACGTTTTCCGGCGCCCTTTTCTCTAC
CAGAACGAGCGGAACGAGGAAGTGCTCAAGATCTACATGGCGCTGGGATG
CAGCTTCACCGCAGGCTGCATTGCCCAGGCACTGGCCAATCCCTTTGACA
TCGTCAAGGTGCGAATGCAGACGGAAGGACGCCGCCGCCAGCTGGGCTAT
GATGTGCGGGTGAACAGCATGGTGCAGGCCTTCGTGGACATCTACCGCCG
TGGCGGACTGCCCAGTATGTGGAAGGGTGTAGGGCCCAGCTGCATGCGTG
CCTGCCTGATGACGACCGGCGATGTGGGCAGCTACGATATCAGTAAGCGC
ACCTTCAAGCGCCTGCTGGACTTGGAGGAAGGCCTGCCACTGCGTTTCGT
GTCTTCCATGTGCGCCGGACTAACGGCATCCGTGCTCAGCACGCCGGCGG
ACGTGATCAAGTCGCGGATGATGAACCAGCCGGTGGACGAGAGCGGCAAG
AATCTGTACTACAAGAACTCCCTCGACTGCGTTAGGAAGCTGGTCAGGGA
GGAGGGTGTCCTCACGTTATATAAGGGCCTAATGCCCACTTGGTTTCGGC
TGGGACCGTTCTCAGTGCTCTTTTGGCTGTCCGTCGAGCAGCTGCGTCAG
TGGGAAGGCCAGAGTGGATTTGCAAGCTTTCTAGACCAT
BO14676.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ucp4C-RA | 1008 | CG9064-PA | 1..1005 | 17..1021 | 5025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:19:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ucp4C-RA | 1196 | CG9064-RA | 118..1122 | 17..1021 | 5025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:19:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5968683..5969687 | 17..1021 | 5025 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:19:41 has no hits.
BO14676.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:56 Download gff for
BO14676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ucp4C-RA | 1..1008 | 17..1022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:47 Download gff for
BO14676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ucp4C-RA | 74..1091 | 5..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:32 Download gff for
BO14676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ucp4C-RA | 118..1122 | 17..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:56 Download gff for
BO14676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ucp4C-RA | 74..1091 | 5..1021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:57 Download gff for
BO14676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ucp4C-RA | 118..1122 | 17..1023 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:57 Download gff for
BO14676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5968683..5969687 | 17..1023 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:32 Download gff for
BO14676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5968683..5969687 | 17..1023 | 99 | | Plus |
BO14676.pep Sequence
Translation from 16 to 1039
> BO14676.pep
MDKAERDYWHLRSLEIEEEPRFPPTNVADPLTARNLFQLYVNTFIGANLA
ESCVFPLDVAKTRMQVDGEQAKKTGKAMPTFRATLTNMIRVEGFKSLYAG
FSAMVTRNFIFNSLRVVLYDVFRRPFLYQNERNEEVLKIYMALGCSFTAG
CIAQALANPFDIVKVRMQTEGRRRQLGYDVRVNSMVQAFVDIYRRGGLPS
MWKGVGPSCMRACLMTTGDVGSYDISKRTFKRLLDLEEGLPLRFVSSMCA
GLTASVLSTPADVIKSRMMNQPVDESGKNLYYKNSLDCVRKLVREEGVLT
LYKGLMPTWFRLGPFSVLFWLSVEQLRQWEGQSGFASFLDH
BO14676.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ucp4C-PA | 335 | CG9064-PA | 1..335 | 1..335 | 1747 | 100 | Plus |
Ucp4B-PA | 337 | CG18340-PA | 38..337 | 38..335 | 651 | 41.3 | Plus |
Ucp4A-PB | 340 | CG6492-PB | 44..340 | 40..335 | 621 | 40 | Plus |
Ucp4A-PA | 340 | CG6492-PA | 44..340 | 40..335 | 621 | 40 | Plus |
Bmcp-PB | 303 | CG7314-PB | 20..303 | 50..329 | 399 | 31.5 | Plus |