Clone Sequence Records
BO14686.3prime Sequence
707 bp (706 high quality bases) assembled on 2006-06-02
> BO14686.3prime
ATGGTCTAGAAAGCTTGCTTTTGCGTCCGGATTACAATAATTGAGCATGG
AGTCCATGTTGATAACATGGGCCATAAGATCCCTTTCTTCGTTCGATGGA
AATAGCCAGCCCAAGAACTCAACCAAAACGGGTTGTTGTGAAACAACCGA
GGAGTAGTCCTCAAACGAAATGACTCCATCCTTGTCTACATCAAACTTCT
TCATAATAAATTCAGTCATGTCCGCTCTGAGCTCAATTAGTTCATCTTCG
TCGTCGCCTTCGTGGAAGAATTTCTCGCATGCCACGCCCACCTGCTCGCG
ATCGATAACTCCGGTGTTCTTGGTGTCATAAACTTCAAAGGCAAACTTCA
TACGGCGCTCCAGATCCTCTGTGGTGTACAGCTCAAAGAGATCAACCCAG
GCACGGGGACTCACGTACTTGGTATCCTTGGTGATGGCCAGAAGGGAGCG
TTCAATCACCTGAACATTGGCCACGTTGAAGAGCACCAAGTAGATCTGGT
AGAACTGATTCTTCTTCATCTGTTTGGCGCCAGGTCCGTTGAACCTGACG
AACTTGTAGTAAACGCAAAGCAAACAGGTGATGTCCAAGGTGGACATCTT
CGAGGTTGCAGCGATCTCCTTAATCAATCCACCGTACAGGGCCGAGAACT
TGCTGTTCTCGGTGCTATCGACAGTGGAGTCTAGGTTTTCCATGTCGACT
GATAACT
BO14686.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15177-PA | 678 | CG15177-RA | 1..675 | 693..19 | 3375 | 100 | Minus |
CG15178-PA | 600 | CG15178-RA | 181..246 | 513..448 | 180 | 90.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:42:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15177-RA | 1013 | CG15177-RA | 131..806 | 694..19 | 3380 | 100 | Minus |
CG15177-RB | 989 | CG15177-RB | 131..782 | 694..19 | 3010 | 96.4 | Minus |
sowi-RA | 830 | CG15178-RA | 148..771 | 693..67 | 740 | 75.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6628829..6629191 | 332..694 | 1815 | 100 | Plus |
3R | 32079331 | 3R | 6628411..6628615 | 19..223 | 1025 | 100 | Plus |
3R | 32079331 | 3R | 6628664..6628775 | 222..333 | 560 | 100 | Plus |
3R | 32079331 | 3R | 6627434..6627753 | 374..693 | 445 | 75.9 | Plus |
3R | 32079331 | 3R | 6626989..6627145 | 67..223 | 260 | 77.7 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:42:48 has no hits.
BO14686.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:34:11 Download gff for
BO14686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-PA | 1..678 | 18..693 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:34 Download gff for
BO14686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-PA | 1..678 | 18..693 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:45:40 Download gff for
BO14686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-RA | 131..813 | 11..694 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:49:42 Download gff for
BO14686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-RA | 131..813 | 11..694 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:49:42 Download gff for
BO14686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6628404..6628614 | 11..222 | 98 | <- | Plus |
3R | 6628665..6628775 | 223..333 | 100 | <- | Plus |
3R | 6628831..6629191 | 334..694 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:45:40 Download gff for
BO14686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2454126..2454336 | 11..222 | 98 | <- | Plus |
arm_3R | 2454387..2454497 | 223..333 | 100 | <- | Plus |
arm_3R | 2454553..2454913 | 334..694 | 100 | | Plus |
BO14686.5prime Sequence
707 bp (707 high quality bases) assembled on 2006-06-16
> BO14686.5prime
GAAGTTATCAGTCGACATGGAAAACCTAGACTCCACTGTCGATAGCACCG
AGAACAGCAAGTTCTCGGCCCTGTACGGTGGATTGATTAAGGAGATCGCT
GCAACCTCGAAGATGTCCACCTTGGACATCACCTGTTTGCTTTGCGTTTA
CTACAAGTTCGTCAGGTTCAACGGACCTGGCGCCAAACAGATGAAGAAGA
ATCAGTTCTACCAGATCTACTTGGTGCTCTTCAACGTGGCCAATGTTCAG
GTGATTGAACGCTCCCTTCTGGCCATCACCAAGGATACCAAGTACGTGAG
TCCCCGTGCCTGGGTTGATCTCTTTGAGCTGTACACCACAGAGGATCTGG
AGCGCCGTATGAAGTTTGCCTTTGAAGTTTATGACACCAAGAACACCGGA
GTTATCGATCGCGAGCAGGTGGGCGTGGCATGCGAGAAATTCTTCCACGA
AGGCGACGACGAAGATGAACTAATTGAGCTCAGAGCGGACATGACTGAAT
TTATTATGAAGAAGTTTGATGTAGACAAGGATGGAGTCATTTCGTTTGAG
GACTACTCCTCGGTTGTTTCACAACAACCCGTTTTGGTTGAGTTCTTGGG
CTGGCTATTTCCATCGAACGAAGAAAGGGATCTTATGGCCCATGTTATCA
ACATGGACTCCATGCTCAATTATTGTAATCCGGACGCAAAAGCAAGCTTT
CTAGACC
BO14686.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15177-PA | 678 | CG15177-RA | 1..675 | 17..691 | 3375 | 100 | Plus |
CG15178-PA | 600 | CG15178-RA | 181..246 | 197..262 | 180 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:07:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15177-RA | 1013 | CG15177-RA | 131..806 | 16..691 | 3380 | 100 | Plus |
CG15177-RB | 989 | CG15177-RB | 131..782 | 16..691 | 3010 | 96.4 | Plus |
sowi-RA | 830 | CG15178-RA | 148..771 | 17..643 | 740 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:07:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6628829..6629191 | 378..16 | 1815 | 100 | Minus |
3R | 32079331 | 3R | 6628411..6628615 | 691..487 | 1025 | 100 | Minus |
3R | 32079331 | 3R | 6628664..6628775 | 488..377 | 560 | 100 | Minus |
3R | 32079331 | 3R | 6627434..6627753 | 336..17 | 445 | 75.9 | Minus |
3R | 32079331 | 3R | 6626989..6627145 | 643..487 | 260 | 77.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:07:25 has no hits.
BO14686.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:34:13 Download gff for
BO14686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-PA | 1..678 | 17..692 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:36 Download gff for
BO14686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-PA | 1..678 | 17..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:21 Download gff for
BO14686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-RA | 131..813 | 16..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:17 Download gff for
BO14686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-RA | 131..813 | 16..699 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:17 Download gff for
BO14686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6628404..6628614 | 488..699 | 98 | <- | Minus |
3R | 6628665..6628775 | 377..487 | 100 | <- | Minus |
3R | 6628831..6629191 | 16..376 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:21 Download gff for
BO14686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2454126..2454336 | 488..699 | 98 | <- | Minus |
arm_3R | 2454387..2454497 | 377..487 | 100 | <- | Minus |
arm_3R | 2454553..2454913 | 16..376 | 100 | | Minus |
BO14686.complete Sequence
709 bp (709 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633226
> BO14686.complete
GAAGTTATCAGTCGACATGGAAAACCTAGACTCCACTGTCGATAGCACCG
AGAACAGCAAGTTCTCGGCCCTGTACGGTGGATTGATTAAGGAGATCGCT
GCAACCTCGAAGATGTCCACCTTGGACATCACCTGTTTGCTTTGCGTTTA
CTACAAGTTCGTCAGGTTCAACGGACCTGGCGCCAAACAGATGAAGAAGA
ATCAGTTCTACCAGATCTACTTGGTGCTCTTCAACGTGGCCAATGTTCAG
GTGATTGAACGCTCCCTTCTGGCCATCACCAAGGATACCAAGTACGTGAG
TCCCCGTGCCTGGGTTGATCTCTTTGAGCTGTACACCACAGAGGATCTGG
AGCGCCGTATGAAGTTTGCCTTTGAAGTTTATGACACCAAGAACACCGGA
GTTATCGATCGCGAGCAGGTGGGCGTGGCATGCGAGAAATTCTTCCACGA
AGGCGACGACGAAGATGAACTAATTGAGCTCAGAGCGGACATGACTGAAT
TTATTATGAAGAAGTTTGATGTAGACAAGGATGGAGTCATTTCGTTTGAG
GACTACTCCTCGGTTGTTTCACAACAACCCGTTTTGGTTGAGTTCTTGGG
CTGGCTATTTCCATCGAACGAAGAAAGGGATCTTATGGCCCATGTTATCA
ACATGGACTCCATGCTCAATTATTGTAATCCGGACGCAAAAGCAAGCTTT
CTAGACCAT
BO14686.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15177-RA | 678 | CG15177-PA | 1..675 | 17..691 | 3375 | 100 | Plus |
CG15177-RB | 654 | CG15177-PB | 1..471 | 17..487 | 2355 | 100 | Plus |
CG15177-RB | 654 | CG15177-PB | 471..651 | 511..691 | 905 | 100 | Plus |
sowi-RA | 654 | CG15178-PA | 1..624 | 17..643 | 715 | 74.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15177-RA | 1013 | CG15177-RA | 131..806 | 16..691 | 3380 | 100 | Plus |
CG15177-RB | 989 | CG15177-RB | 131..602 | 16..487 | 2360 | 100 | Plus |
CG15177-RB | 989 | CG15177-RB | 602..782 | 511..691 | 905 | 100 | Plus |
sowi-RA | 830 | CG15178-RA | 148..771 | 17..643 | 715 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6628829..6629191 | 378..16 | 1815 | 100 | Minus |
3R | 32079331 | 3R | 6628411..6628615 | 691..487 | 1025 | 100 | Minus |
3R | 32079331 | 3R | 6628664..6628775 | 488..377 | 560 | 100 | Minus |
3R | 32079331 | 3R | 6627434..6627753 | 336..17 | 445 | 75.9 | Minus |
3R | 32079331 | 3R | 6626989..6627145 | 643..487 | 260 | 77.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:36:01 has no hits.
BO14686.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:00 Download gff for
BO14686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-RA | 1..678 | 17..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:53 Download gff for
BO14686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-RA | 131..813 | 16..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:47 Download gff for
BO14686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-RA | 132..802 | 17..687 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:00 Download gff for
BO14686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-RA | 131..813 | 16..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:39 Download gff for
BO14686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-RA | 132..802 | 17..687 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:39 Download gff for
BO14686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6628665..6628775 | 377..487 | 100 | <- | Minus |
3R | 6628831..6629190 | 17..376 | 100 | | Minus |
3R | 6628415..6628614 | 488..687 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:47 Download gff for
BO14686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2454387..2454497 | 377..487 | 100 | <- | Minus |
arm_3R | 2454553..2454912 | 17..376 | 100 | | Minus |
arm_3R | 2454137..2454336 | 488..687 | 100 | <- | Minus |
BO14686.pep Sequence
Translation from 16 to 709
> BO14686.pep
MENLDSTVDSTENSKFSALYGGLIKEIAATSKMSTLDITCLLCVYYKFVR
FNGPGAKQMKKNQFYQIYLVLFNVANVQVIERSLLAITKDTKYVSPRAWV
DLFELYTTEDLERRMKFAFEVYDTKNTGVIDREQVGVACEKFFHEGDDED
ELIELRADMTEFIMKKFDVDKDGVISFEDYSSVVSQQPVLVEFLGWLFPS
NEERDLMAHVINMDSMLNYCNPDAKASFLDH
BO14686.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15177-PA | 225 | CG15177-PA | 1..225 | 1..225 | 1166 | 100 | Plus |
CG15177-PB | 217 | CG15177-PB | 1..217 | 1..225 | 1106 | 96.4 | Plus |
sowi-PA | 217 | CG15178-PA | 1..217 | 1..218 | 873 | 75.2 | Plus |
sunz-PA | 220 | CG15179-PA | 1..213 | 1..216 | 507 | 47.2 | Plus |
d-cup-PA | 219 | CG14387-PA | 3..205 | 4..209 | 421 | 40.8 | Plus |