Clone Sequence Records
BO14688.5prime Sequence
687 bp (644 high quality bases) assembled on 2006-06-02
> BO14688.5prime
GAAGTTGATCAGTCGACATGTATGCGCTTCGACACCTGCGACTCCAGAGC
GCTAGGCACTTCCGCAGCTCTTATGCAGCGGCGGCAACAACAAAACACAT
GCTGCCCCGGCAACCAGCGCGTGTTCTGATTGGAGATTGGAGCACTTGGG
ATAAGTCCCGGCTGCAGGATGTATGCTCCAGGAGTTCGAGTACCGCCACT
GAGCCCGTGAAGCAGCAAACGCCGCTGCAGGAACTCGTGTCGGCCGCCAA
ACCCTATGCCCAACTAATGCGAATCGACCGGCCTATTGGCACCTACCTCC
TTTTCTGGCCTTGCGCCTGGAGCATAGCGCTCAGCGCGGATGCGGGCTGC
TGGCCGGACCTCACCATGCTGGGTCTGTTCGGCACCGGGGCACTGATAAT
GCGCGGCGCCGGGTGCACTATCAACGATCTCTGGGACAAGGACATCGATG
CCAAAGTGGAGCGCACGAGGTTGCGGCCCTTGGCCTCGGGTCAGATCAGT
CAGTTCGATGCCATAGTATTCCTCTCGGCGCAGCTCAGTCTGGGTCTTTT
GGTGCTGGTCCAGCTCAACTGGCAATCCATATTGTTGGGCGCCAGTTCGC
TGGGCCTCGTGATCACGTATCCGCTGATGAAAAAGAGTCACCTACTGGCC
CCAGCTGGGTCTGGGCATGGCCTTCAATTGGGGCGCC
BO14688.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9613-PA | 1179 | CG9613-RA | 1..616 | 18..633 | 3055 | 99.8 | Plus |
| CG9613-PA | 1179 | CG9613-RA | 613..669 | 631..687 | 260 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coq2-RA | 1643 | CG9613-RA | 95..763 | 18..687 | 3295 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:28:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8315722..8316390 | 687..18 | 3270 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:28:11 has no hits.
BO14688.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:34:15 Download gff for
BO14688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9613-PA | 1..669 | 18..687 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:38 Download gff for
BO14688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9613-PA | 1..669 | 18..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:09:07 Download gff for
BO14688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 89..763 | 8..687 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:25 Download gff for
BO14688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 89..763 | 8..687 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:25 Download gff for
BO14688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8315722..8316396 | 8..687 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:09:07 Download gff for
BO14688.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4141444..4142118 | 8..687 | 98 | | Minus |
BO14688.complete Sequence
1210 bp (1210 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633227
> BO14688.complete
GAAGTTATCAGTCGACATGTATGCGCTTCGACACCTGCGACTCCAGAGCG
CTAGGCACTTCCGCAGCTCTTATGCAGCGGCGGCAACAACAAAACACATG
CTGCCCCGGCAACCAGCGCGTGTTCTGATTGGAGATTGGAGCACTTGGGA
TAAGTCCCGGCTGCAGGATGTATGCTCCAGGAGTTCGAGTACCGCCACTG
AGCCCGTGAAGCAGCAAACGCCGCTGCAGGAACTCGTGTCGGCCGCCAAA
CCCTATGCCCAACTAATGCGAATCGACCGGCCTATTGGCACCTACCTCCT
TTTCTGGCCTTGCGCCTGGAGCATAGCGCTCAGCGCGGATGCGGGCTGCT
GGCCGGACCTCACCATGCTGGGTCTGTTCGGCACCGGGGCACTGATAATG
CGCGGCGCCGGGTGCACTATCAACGATCTCTGGGACAAGGACATCGATGC
CAAAGTGGAGCGCACGAGGTTGCGGCCCTTGGCCTCGGGTCAGATCAGTC
AGTTCGATGCCATAGTATTCCTCTCGGCGCAGCTCAGTCTGGGTCTTTTG
GTGCTGGTCCAGCTCAACTGGCAATCCATATTGTTGGGCGCCAGTTCGCT
GGGCCTCGTGATCACGTATCCGCTGATGAAAAGAGTCACCTACTGGCCCC
AGCTGGTTCTGGGCATGGCCTTCAATTGGGGCGCCCTACTGGGCTGGTGT
GCCACCCAGGGCAGTGTCAACCTTGCCGCCTGCTTGCCACTCTACCTCTC
CGGCGTCTGTTGGACCATTGTCTACGACACGATATACGCCCACCAGGACA
AGCTGGATGACCTGCAGATCGGTGTGAAGTCCACGGCACTTCGATTTGGG
GAGAACACCAAGGTCTGGCTGTCGGGATTCACGGCAGCAATGCTGACGGG
TCTTTCTGCCGCCGGCTGGGCTTGCGATCAAACGGTGCCGTACTACGCGG
CTGTTGGAGTAGTGGGTGCCCATCTGGTGCAGCAGATCTATTCCCTCAAC
ATTGACAACCCCAGCGACTGCGCCAAAAAGTTCATATCGAACCACCAAGT
AGGACTCATTCTCTTCCTCGGCATTGTTCTGGGCACCCTTCTGAAATCAG
ACGAAAGCAAGAAACAGCGACAATCCTCACTAACAACATCGACGGCCAGC
TCGTACGTTCCAGCGCTGCCGCAAAAGCCAGAAGTTTTAAGCGCAAGCTT
TCTAGACCAT
BO14688.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coq2-RA | 1179 | CG9613-PA | 1..1176 | 17..1192 | 5865 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coq2-RA | 1643 | CG9613-RA | 95..1270 | 17..1192 | 5865 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8315422..8316390 | 985..17 | 4830 | 99.9 | Minus |
| 3R | 32079331 | 3R | 8315157..8315366 | 1192..983 | 1050 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:03:24 has no hits.
BO14688.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:18:02 Download gff for
BO14688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 1..1179 | 17..1195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:56 Download gff for
BO14688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 41..1222 | 7..1192 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:20 Download gff for
BO14688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 95..1270 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:18:02 Download gff for
BO14688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 41..1222 | 7..1192 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:15 Download gff for
BO14688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 95..1270 | 17..1194 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:15 Download gff for
BO14688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8315154..8315363 | 986..1194 | 99 | <- | Minus |
| 3R | 8315422..8316390 | 17..985 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:20 Download gff for
BO14688.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4140876..4141085 | 986..1194 | 99 | <- | Minus |
| arm_3R | 4141144..4142112 | 17..985 | 99 | | Minus |
BO14688.pep Sequence
Translation from 16 to 1210
> BO14688.pep
MYALRHLRLQSARHFRSSYAAAATTKHMLPRQPARVLIGDWSTWDKSRLQ
DVCSRSSSTATEPVKQQTPLQELVSAAKPYAQLMRIDRPIGTYLLFWPCA
WSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTINDLWDKDIDAKVERT
RLRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGLVIT
YPLMKRVTYWPQLVLGMAFNWGALLGWCATQGSVNLAACLPLYLSGVCWT
IVYDTIYAHQDKLDDLQIGVKSTALRFGENTKVWLSGFTAAMLTGLSAAG
WACDQTVPYYAAVGVVGAHLVQQIYSLNIDNPSDCAKKFISNHQVGLILF
LGIVLGTLLKSDESKKQRQSSLTTSTASSYVPALPQKPEVLSASFLDH
BO14688.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coq2-PA | 392 | CG9613-PA | 1..392 | 1..392 | 2041 | 100 | Plus |
