Clone Sequence Records
BO14690.3prime Sequence
772 bp (706 high quality bases) assembled on 2006-06-16
> BO14690.3prime
ATGGTCTAGAAAGCTTGCGTCAAAGATGAATCCCAATTGCTCCATATCCT
TTTGGATACTATTGCCCGAACACTGCTCCTTCAGCATATCCAACCAGAGC
GTATAAGAGTAGTCCTCGTGCAAGCCACCATAGCGCTTGGGAAGATGTTC
TGGGTTGATGTGTTTGTGCAGGGAAGTCATGTCACTGCCATGGATGTATA
GCTTTTCTCGCATAGCGGCGTTGAGGAAAGGTTTAAATATCTTGAATGCC
GCGTTGAAGACCCAATTCTGATTTACAATATGAAGGGCGGATGTTCTAAT
GGGCATGGAGGTCACTAGTAGAGCAATCATCTTCTGAGCCACGCTGGGAC
TCAGGTGGAGTATGTGTTCCAAGCCCAGGTCCTTCAGATCGAATATTCCC
ACTCCTCCGACAATCTGTGAGATGGGTTCCAGGCTGCCCAGTTCCTGCAG
GACAATGGTGGCGCGAAATATATCGTCGACGGTTACTTGATTGGGTCGCC
ACAGTCCGAATCGGTAGATGAGTATCCTATGGCCATGTTGATCCCGATAG
GGAGTCACTGTCAGGATGTCCGATTGCCCAACATGTCTCAGGTCCAGAGG
ACGAACCTTCTCATAAAAGCTTTTGTTCTGCTCCCGAAACCTGTAGTAAC
TGCAGAGCAATTTGTAACTGTTCTCGATTTTCCAGTAGCGGGCTCTTAGG
AATTTCTCCAGGTACTTCGCATCACTTCTGTGTGGTTGGCATTCATTATG
TTCTAGTATGTAGTTACGGAAT
BO14690.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10026-PA | 873 | CG10026-RA | 117..870 | 772..19 | 3770 | 100 | Minus |
| CG10026-PB | 900 | CG10026-RB | 144..897 | 772..19 | 3770 | 100 | Minus |
| CG10026-PC | 873 | CG10026-RC | 117..870 | 772..19 | 3770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:47:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10026-RD | 1143 | CG10026-RD | 257..1010 | 772..19 | 3770 | 100 | Minus |
| CG10026-RC | 1207 | CG10026-RC | 321..1074 | 772..19 | 3770 | 100 | Minus |
| CG10026-RB | 1533 | CG10026-RB | 647..1400 | 772..19 | 3770 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:47:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19456823..19457168 | 658..313 | 1730 | 100 | Minus |
| 2L | 23513712 | 2L | 19457227..19457406 | 313..134 | 900 | 100 | Minus |
| 2L | 23513712 | 2L | 19457475..19457590 | 134..19 | 580 | 100 | Minus |
| 2L | 23513712 | 2L | 19456628..19456724 | 754..658 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:47:35 has no hits.
BO14690.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:34:16 Download gff for
BO14690.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10026-PA | 117..873 | 18..772 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:40 Download gff for
BO14690.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10026-PC | 117..873 | 18..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:56:56 Download gff for
BO14690.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10026-RB | 647..1407 | 11..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:28 Download gff for
BO14690.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10026-RB | 647..1407 | 11..772 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:28 Download gff for
BO14690.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19457228..19457406 | 134..312 | 100 | -> | Minus |
| 2L | 19457476..19457597 | 11..133 | 97 | | Minus |
| 2L | 19456549..19456568 | 753..772 | 100 | -> | Minus |
| 2L | 19456630..19456724 | 658..752 | 100 | -> | Minus |
| 2L | 19456824..19457168 | 313..657 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:56:56 Download gff for
BO14690.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19456549..19456568 | 753..772 | 100 | -> | Minus |
| arm_2L | 19456630..19456724 | 658..752 | 100 | -> | Minus |
| arm_2L | 19457476..19457597 | 11..133 | 97 | | Minus |
| arm_2L | 19456824..19457168 | 313..657 | 100 | -> | Minus |
| arm_2L | 19457228..19457406 | 134..312 | 100 | -> | Minus |
BO14690.5prime Sequence
761 bp (760 high quality bases) assembled on 2006-06-16
> BO14690.5prime
GAAGTTATCAGTCGACATGCCCACCATCGAGCACAAGCTAAACATCACCG
AGGAGGAGGTTCCGGAGCACATCCGCCGACTTGCCCAGGAGCAGGGAGAG
TGTCCCAGTTCCAAGGATAAGGTCATCGAACAATTCCGTAACTACATACT
AGAACATAATGAATGCCAACCACACAGAAGTGATGCGAAGTACCTGGAGA
AATTCCTAAGAGCCCGCTACTGGAAAATCGAGAACAGTTACAAATTGCTC
TGCAGTTACTACAGGTTTCGGGAGCAGAACAAAAGCTTTTATGAGAAGGT
TCGTCCTCTGGACCTGAGACATGTTGGGCAATCGGACATCCTGACAGTGA
CTCCCTATCGGGATCAACATGGCCATAGGATACTCATCTACCGATTCGGA
CTGTGGCGACCCAATCAAGTAACCGTCGACGATATATTTCGCGCCACCAT
TGTCCTGCAGGAACTGGGCAGCCTGGAACCCATCTCACAGATTGTCGGAG
GAGTGGGAATATTCGATCTGAAGGACCTGGGCTTGGAACACATACTCCAC
CTGAGTCCCAGCGTGGCTCAGAAGATGATTGCTCTACTAGTGACCTCCAT
GCCCATTAGAACATCCGCCCTTCATATTGTAAATCAGAATTGGGTCTTCA
ACGCGGCATTCAAGATATTTAAACCTTTCCTCAACGCCGCTATGCGAGAA
AAGCTATACATCCATGGCAGTGACATGACTTCCCTGCACAAACACATCAA
CCCAGAACATC
BO14690.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10026-PB | 900 | CG10026-RB | 27..772 | 16..761 | 3730 | 100 | Plus |
| CG10026-PA | 873 | CG10026-RA | 1..745 | 17..761 | 3725 | 100 | Plus |
| CG10026-PC | 873 | CG10026-RC | 1..745 | 17..761 | 3725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10026-RD | 1143 | CG10026-RD | 140..885 | 16..761 | 3730 | 100 | Plus |
| CG10026-RC | 1207 | CG10026-RC | 204..949 | 16..761 | 3730 | 100 | Plus |
| CG10026-RB | 1533 | CG10026-RB | 530..1275 | 16..761 | 3730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19456823..19457168 | 247..592 | 1730 | 100 | Plus |
| 2L | 23513712 | 2L | 19457227..19457396 | 592..761 | 850 | 100 | Plus |
| 2L | 23513712 | 2L | 19456432..19456568 | 16..152 | 685 | 100 | Plus |
| 2L | 23513712 | 2L | 19456628..19456724 | 151..247 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:04:08 has no hits.
BO14690.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:34:17 Download gff for
BO14690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10026-PB | 27..772 | 16..761 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:41 Download gff for
BO14690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10026-PB | 27..772 | 16..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:56:04 Download gff for
BO14690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10026-RB | 530..1275 | 16..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:00:11 Download gff for
BO14690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10026-RB | 530..1275 | 16..761 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:00:11 Download gff for
BO14690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19456824..19457168 | 248..592 | 100 | -> | Plus |
| 2L | 19457228..19457396 | 593..761 | 100 | | Plus |
| 2L | 19456432..19456568 | 16..152 | 100 | -> | Plus |
| 2L | 19456630..19456724 | 153..247 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:56:04 Download gff for
BO14690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19456630..19456724 | 153..247 | 100 | -> | Plus |
| arm_2L | 19456824..19457168 | 248..592 | 100 | -> | Plus |
| arm_2L | 19456432..19456568 | 16..152 | 100 | -> | Plus |
| arm_2L | 19457228..19457396 | 593..761 | 100 | | Plus |
BO14690.complete Sequence
904 bp (904 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633228
> BO14690.complete
GAAGTTATCAGTCGACATGCCCACCATCGAGCACAAGCTAAACATCACCG
AGGAGGAGGTTCCGGAGCACATCCGCCGACTTGCCCAGGAGCAGGGAGAG
TGTCCCAGTTCCAAGGATAAGGTCATCGAACAATTCCGTAACTACATACT
AGAACATAATGAATGCCAACCACACAGAAGTGATGCGAAGTACCTGGAGA
AATTCCTAAGAGCCCGCTACTGGAAAATCGAGAACAGTTACAAATTGCTC
TGCAGTTACTACAGGTTTCGGGAGCAGAACAAAAGCTTTTATGAGAAGGT
TCGTCCTCTGGACCTGAGACATGTTGGGCAATCGGACATCCTGACAGTGA
CTCCCTATCGGGATCAACATGGCCATAGGATACTCATCTACCGATTCGGA
CTGTGGCGACCCAATCAAGTAACCGTCGACGATATATTTCGCGCCACCAT
TGTCCTGCAGGAACTGGGCAGCCTGGAACCCATCTCACAGATTGTCGGAG
GAGTGGGAATATTCGATCTGAAGGACCTGGGCTTGGAACACATACTCCAC
CTGAGTCCCAGCGTGGCTCAGAAGATGATTGCTCTACTAGTGACCTCCAT
GCCCATTAGAACATCCGCCCTTCATATTGTAAATCAGAATTGGGTCTTCA
ACGCGGCATTCAAGATATTTAAACCTTTCCTCAACGCCGCTATGCGAGAA
AAGCTATACATCCATGGCAGTGACATGACTTCCCTGCACAAACACATCAA
CCCAGAACATCTTCCCAAGCGCTATGGTGGCTTGCACGAGGACTACTCTT
ATACGCTCTGGTTGGATATGCTGAAGGAGCAGTGTTCGGGCAATAGTATC
CAAAAGGATATGGAGCAATTGGGATTCATCTTTGACGCAAGCTTTCTAGA
CCAT
BO14690.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10026-RB | 900 | CG10026-PB | 27..897 | 16..886 | 4355 | 100 | Plus |
| CG10026-RD | 873 | CG10026-PD | 1..870 | 17..886 | 4350 | 100 | Plus |
| CG10026-RC | 873 | CG10026-PC | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10026-RD | 1143 | CG10026-RD | 140..1010 | 16..886 | 4355 | 100 | Plus |
| CG10026-RC | 1207 | CG10026-RC | 204..1074 | 16..886 | 4355 | 100 | Plus |
| CG10026-RB | 1533 | CG10026-RB | 530..1400 | 16..886 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19456823..19457168 | 247..592 | 1730 | 100 | Plus |
| 2L | 23513712 | 2L | 19457227..19457406 | 592..771 | 900 | 100 | Plus |
| 2L | 23513712 | 2L | 19456432..19456568 | 16..152 | 685 | 100 | Plus |
| 2L | 23513712 | 2L | 19457475..19457590 | 771..886 | 580 | 100 | Plus |
| 2L | 23513712 | 2L | 19456628..19456724 | 151..247 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:23:29 has no hits.
BO14690.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:46 Download gff for
BO14690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10026-RB | 27..900 | 16..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:36 Download gff for
BO14690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10026-RC | 204..1081 | 16..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:06 Download gff for
BO14690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10026-RB | 531..1400 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:46 Download gff for
BO14690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10026-RC | 204..1081 | 16..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:34 Download gff for
BO14690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10026-RB | 531..1400 | 17..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:34 Download gff for
BO14690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19457228..19457406 | 593..771 | 100 | -> | Plus |
| 2L | 19457476..19457590 | 772..888 | 98 | | Plus |
| 2L | 19456433..19456568 | 17..152 | 100 | -> | Plus |
| 2L | 19456630..19456724 | 153..247 | 100 | -> | Plus |
| 2L | 19456824..19457168 | 248..592 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:06 Download gff for
BO14690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19456433..19456568 | 17..152 | 100 | -> | Plus |
| arm_2L | 19456630..19456724 | 153..247 | 100 | -> | Plus |
| arm_2L | 19456824..19457168 | 248..592 | 100 | -> | Plus |
| arm_2L | 19457228..19457406 | 593..771 | 100 | -> | Plus |
| arm_2L | 19457476..19457590 | 772..888 | 98 | | Plus |
BO14690.pep Sequence
Translation from 16 to 904
> BO14690.pep
MPTIEHKLNITEEEVPEHIRRLAQEQGECPSSKDKVIEQFRNYILEHNEC
QPHRSDAKYLEKFLRARYWKIENSYKLLCSYYRFREQNKSFYEKVRPLDL
RHVGQSDILTVTPYRDQHGHRILIYRFGLWRPNQVTVDDIFRATIVLQEL
GSLEPISQIVGGVGIFDLKDLGLEHILHLSPSVAQKMIALLVTSMPIRTS
ALHIVNQNWVFNAAFKIFKPFLNAAMREKLYIHGSDMTSLHKHINPEHLP
KRYGGLHEDYSYTLWLDMLKEQCSGNSIQKDMEQLGFIFDASFLDH
BO14690.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10026-PD | 290 | CG10026-PD | 1..290 | 1..290 | 1542 | 100 | Plus |
| CG10026-PC | 290 | CG10026-PC | 1..290 | 1..290 | 1542 | 100 | Plus |
| CG10026-PA | 290 | CG10026-PA | 1..290 | 1..290 | 1542 | 100 | Plus |
| CG10026-PB | 299 | CG10026-PB | 10..299 | 1..290 | 1542 | 100 | Plus |
| CG5973-PF | 311 | CG5973-PF | 23..272 | 7..255 | 406 | 35.3 | Plus |
