Clone Sequence Records
BO14691.3prime Sequence
618 bp (618 high quality bases) assembled on 2006-06-16
> BO14691.3prime
ATGGTCTAGAAAGCTTGCCATTATTAAACACTTTCGCTGGCGTCGCTTTA
GCGGCTCTGGTCTGAGCACCGCGCGCACCGCTTCCTCGAACACCGGCTTG
AGACCGCGCTGCGTCAAGGCGGAGCACTCCATGTATTTCACAGCGCGTAT
CTTGTTTGCCAGCTTCTGGCCCTGCTCGCGCTTCAGCGGCGTCAGTCCCT
GCTCTGCCAGGCCGCTGAGTGTCTCTCGATCTTCGCGCAAATCGATTTTG
GTGCCAACTAGAATGATGGGCGCATCGGGACAGTGGTGCTTTATCTCCGG
ATACCATTTTGAGGTGACGTTCTCAAAGGACGAGGGACTCGCCACGCTGT
AGCATATCAGGAAAACGTCTGTCTGCGGGTAGGATAGCGGTCTCAGGCGG
TCGTAGTCCTCCTGACCCGCCGTATCCCACAGTCCCAGCGAGACCTGTAT
TGTGTCCACTTGCATGGGCGCCGAGTAGTTGTCGAAGACTGTGGGCACAT
ATTCGCCGGGAAAGCAGTCTGTCGTGTAGGAGATTAGCATGCAGGTCTTT
CCGACGGTGCCGTCACCAACGACTACACACTTTATGGGCCTTCCGGTTGA
CATGTCCGACTGATAACT
BO14691.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5588-PB | 588 | Mtl-RB | 1..585 | 603..19 | 2900 | 99.8 | Minus |
| CG5588-PA | 588 | Mtl-RA | 1..585 | 603..19 | 2900 | 99.8 | Minus |
| CG5588-PC | 588 | Mtl-RC | 1..585 | 603..19 | 2900 | 99.8 | Minus |
| CG8556-PA | 579 | Rac2-RA | 166..221 | 429..374 | 155 | 91 | Minus |
| CG2248-PA | 579 | Rac1-RA | 157..203 | 438..392 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:31:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtl-RC | 1197 | CG5588-RC | 215..799 | 603..19 | 2910 | 99.8 | Minus |
| Mtl-RA | 2002 | CG5588-RA | 244..828 | 603..19 | 2910 | 99.8 | Minus |
| Mtl-RB | 2097 | CG5588-RB | 339..923 | 603..19 | 2910 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:31:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27638073..27638306 | 487..254 | 1155 | 99.6 | Minus |
| 3R | 32079331 | 3R | 27638378..27638541 | 255..92 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 27637888..27638003 | 603..488 | 580 | 100 | Minus |
| 3L | 28110227 | 3L | 1301985..1302334 | 233..582 | 415 | 74.6 | Plus |
| 3R | 32079331 | 3R | 27638622..27638697 | 94..19 | 380 | 100 | Minus |
| 3L | 28110227 | 3L | 7434290..7434503 | 374..587 | 290 | 75.7 | Plus |
| X | 23542271 | X | 19698114..19698237 | 438..315 | 200 | 77.4 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:31:26 has no hits.
BO14691.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:34:18 Download gff for
BO14691.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtl-PB | 1..588 | 15..603 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:42 Download gff for
BO14691.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5588-PC | 1..588 | 15..603 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:59:12 Download gff for
BO14691.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtl-RB | 331..926 | 15..612 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:12:24 Download gff for
BO14691.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtl-RB | 331..926 | 15..612 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:12:24 Download gff for
BO14691.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27637880..27638003 | 488..612 | 96 | -> | Minus |
| 3R | 27638073..27638305 | 255..487 | 99 | -> | Minus |
| 3R | 27638379..27638539 | 94..254 | 100 | -> | Minus |
| 3R | 27638623..27638700 | 15..93 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:59:12 Download gff for
BO14691.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23463602..23463725 | 488..612 | 96 | -> | Minus |
| arm_3R | 23463795..23464027 | 255..487 | 99 | -> | Minus |
| arm_3R | 23464101..23464261 | 94..254 | 100 | -> | Minus |
| arm_3R | 23464345..23464422 | 15..93 | 97 | | Minus |
BO14691.5prime Sequence
618 bp (618 high quality bases) assembled on 2006-06-16
> BO14691.5prime
GAAGTTATCAGTCGGACATGTCAACCGGAAGGCCCATAAAGTGTGTAGTC
GTTGGTGACGGCACCGTCGGAAAGACCTGCATGCTAATCTCCTACACGAC
AGACTGCTTTCCCGGCGAATATGTGCCCACAGTCTTCGACAACTACTCGG
CGCCCATGCAAGTGGACACAATACAGGTCTCGCTGGGACTGTGGGATACG
GCGGGTCAGGAGGACTACGACCGCCTGAGACCGCTATCCTACCCGCAGAC
AGACGTTTTCCTGATATGCTACAGCGTGGCGAGTCCCTCGTCCTTTGAGA
ACGTCACCTCAAAATGGTATCCGGAGATAAAGCACCACTGTCCCGATGCG
CCCATCATTCTAGTTGGCACCAAAATCGATTTGCGCGAAGATCGAGAGAC
ACTCAGCGGCCTGGCAGAGCAGGGACTGACGCCGCTGAAGCGCGAGCAGG
GCCAGAAGCTGGCAAACAAGATACGCGCTGTGAAATACATGGAGTGCTCC
GCCTTGACGCAGCGCGGTCTCAAGCCGGTGTTCGAGGAAGCGGTGCGCGC
GGTGCTCAGACCAGAGCCGCTAAAGCGACGCCAGCGAAAGTGTTTAATAA
TGGCAAGCTTTCTAGACC
BO14691.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5588-PB | 588 | Mtl-RB | 1..585 | 18..602 | 2900 | 99.8 | Plus |
| CG5588-PA | 588 | Mtl-RA | 1..585 | 18..602 | 2900 | 99.8 | Plus |
| CG5588-PC | 588 | Mtl-RC | 1..585 | 18..602 | 2900 | 99.8 | Plus |
| CG8556-PA | 579 | Rac2-RA | 166..221 | 192..247 | 155 | 91 | Plus |
| CG2248-PA | 579 | Rac1-RA | 157..203 | 183..229 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:55:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtl-RC | 1197 | CG5588-RC | 215..799 | 18..602 | 2910 | 99.8 | Plus |
| Mtl-RA | 2002 | CG5588-RA | 244..828 | 18..602 | 2910 | 99.8 | Plus |
| Mtl-RB | 2097 | CG5588-RB | 339..923 | 18..602 | 2910 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:55:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27638073..27638306 | 134..367 | 1155 | 99.6 | Plus |
| 3R | 32079331 | 3R | 27638378..27638541 | 366..529 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 27637888..27638003 | 18..133 | 580 | 100 | Plus |
| 3L | 28110227 | 3L | 1301985..1302334 | 388..39 | 415 | 74.6 | Minus |
| 3R | 32079331 | 3R | 27638622..27638697 | 527..602 | 380 | 100 | Plus |
| 3L | 28110227 | 3L | 7434290..7434503 | 247..34 | 290 | 75.7 | Minus |
| X | 23542271 | X | 19698114..19698237 | 183..306 | 200 | 77.4 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:55:25 has no hits.
BO14691.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:34:19 Download gff for
BO14691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtl-PB | 1..588 | 18..606 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:43 Download gff for
BO14691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5588-PC | 1..588 | 18..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:40:58 Download gff for
BO14691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtl-RB | 331..926 | 9..606 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:17 Download gff for
BO14691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtl-RB | 331..926 | 9..606 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:17 Download gff for
BO14691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27637880..27638003 | 9..133 | 96 | -> | Plus |
| 3R | 27638073..27638305 | 134..366 | 99 | -> | Plus |
| 3R | 27638379..27638539 | 367..527 | 100 | -> | Plus |
| 3R | 27638623..27638700 | 528..606 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:40:58 Download gff for
BO14691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23463602..23463725 | 9..133 | 96 | -> | Plus |
| arm_3R | 23463795..23464027 | 134..366 | 99 | -> | Plus |
| arm_3R | 23464101..23464261 | 367..527 | 100 | -> | Plus |
| arm_3R | 23464345..23464422 | 528..606 | 97 | | Plus |
BO14691.complete Sequence
620 bp assembled on 2008-08-15
> BO14691.complete
GAAGTTATCAGTCGGACATGTCAACCGGAAGGCCCATAAAGTGTGTAGTC
GTTGGTGACGGCACCGTCGGAAAGACCTGCATGCTAATCTCCTACACGAC
AGACTGCTTTCCCGGCGAATATGTGCCCACAGTCTTCGACAACTACTCGG
CGCCCATGCAAGTGGACACAATACAGGTCTCGCTGGGACTGTGGGATACG
GCGGGTCAGGAGGACTACGACCGCCTGAGACCGCTATCCTACCCGCAGAC
AGACGTTTTCCTGATATGCTACAGCGTGGCGAGTCCCTCGTCCTTTGAGA
ACGTCACCTCAAAATGGTATCCGGAGATAAAGCACCACTGTCCCGATGCG
CCCATCATTCTAGTTGGCACCAAAATCGATTTGCGCGAAGATCGAGAGAC
ACTCAGCGGCCTGGCAGAGCAGGGACTGACGCCGCTGAAGCGCGAGCAGG
GCCAGAAGCTGGCAAACAAGATACGCGCTGTGAAATACATGGAGTGCTCC
GCCTTGACGCAGCGCGGTCTCAAGCCGGTGTTCGAGGAAGCGGTGCGCGC
GGTGCTCAGACCAGAGCCGCTAAAGCGACGCCAGCGAAAGTGTTTAATAA
TGGCAAGCTTTCTAGACCAT
BO14691.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtl-RC | 588 | CG5588-PC | 1..585 | 18..602 | 2910 | 99.8 | Plus |
| Mtl-RA | 588 | CG5588-PA | 1..585 | 18..602 | 2910 | 99.8 | Plus |
| Mtl-RB | 588 | CG5588-PB | 1..585 | 18..602 | 2910 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtl-RC | 1197 | CG5588-RC | 215..799 | 18..602 | 2910 | 99.8 | Plus |
| Mtl-RA | 2002 | CG5588-RA | 244..828 | 18..602 | 2910 | 99.8 | Plus |
| Mtl-RB | 2097 | CG5588-RB | 339..923 | 18..602 | 2910 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27638073..27638306 | 134..367 | 1155 | 99.6 | Plus |
| 3R | 32079331 | 3R | 27638378..27638541 | 366..529 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 27637888..27638003 | 18..133 | 580 | 100 | Plus |
| 3L | 28110227 | 3L | 1301985..1302334 | 388..39 | 415 | 74.6 | Minus |
| 3R | 32079331 | 3R | 27638622..27638697 | 527..602 | 380 | 100 | Plus |
| 3L | 28110227 | 3L | 7434290..7434503 | 247..34 | 290 | 75.7 | Minus |
| X | 23542271 | X | 19698114..19698237 | 183..306 | 200 | 77.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:49:30 has no hits.
BO14691.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:50 Download gff for
BO14691.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtl-RC | 207..802 | 9..606 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:27 Download gff for
BO14691.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtl-RB | 337..923 | 17..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:45 Download gff for
BO14691.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtl-RC | 213..799 | 17..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:32 Download gff for
BO14691.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtl-RB | 337..923 | 17..604 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:32 Download gff for
BO14691.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27638379..27638539 | 367..527 | 100 | -> | Plus |
| 3R | 27638623..27638697 | 528..604 | 97 | | Plus |
| 3R | 27637886..27638003 | 17..133 | 99 | -> | Plus |
| 3R | 27638073..27638305 | 134..366 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:27 Download gff for
BO14691.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23463608..23463725 | 17..133 | 99 | -> | Plus |
| arm_3R | 23463795..23464027 | 134..366 | 99 | -> | Plus |
| arm_3R | 23464101..23464261 | 367..527 | 100 | -> | Plus |
| arm_3R | 23464345..23464419 | 528..604 | 97 | | Plus |
BO14691.pep Sequence
Translation from 313 to 619
> BO14691.pep
MVSGDKAPLSRCAHHSSWHQNRFARRSRDTQRPGRAGTDAAEARAGPEAG
KQDTRCEIHGVLRLDAARSQAGVRGSGARGAQTRAAKATPAKVFNNGKLS
RP
Sequence BO14691.pep has no blast hits.
