Clone Sequence Records
BO14694.5prime Sequence
792 bp (768 high quality bases) assembled on 2006-06-02
> BO14694.5prime
GAAGTTATCAGTCGACATGGGGAACCAATTGGCTATACAGATGAATAGCG
ATGAAGACGACGATTTTGATTCTTCGGACAACGAGCTGGGCTTCAACGTG
ATCAACTTTACGGTGAACGCCATGGATCTGCGCTCCGATTATTGCAGCAG
CGAGATGCCAGTTATACGAGGCAAGCCCGATCTAGTTAAATTTCAGAAAA
CTGATATGTACAAGGAGATCCAGGCGTCGAGTGGATTAGTGAGCAATCCG
AACAATCGCTGGAACCTGGTGCACGCCCTTCAGCAGCGTGAGAATGGGTT
GGCATCGCCGCACAGCGCATCGTTCTCCAAGAACCAGCAGCGCTACATAT
CCAATCTTTACATACCAAACAAAAAGGCCACACGCCTGATGTCGCTGGAA
TCCAAAATATTTGTGACCAAGTTCAATCGTTCGGGCAGCAAGTTGCTGAC
CGCTTGTCAAGATGGCTTTGTGCGCATTTACGATGGCGCCAAGGGCACTT
ATCACCTGCTGAATCGCATCCGAGCCCGCGATGTTGAGTGGAGCATCATC
GATGCGGATTTTAGTCCGAATGGCGAGCACTTCGCCTACAGCACCTGGTC
CCGCTCATTGTTCATCATGCCCGTGAATGGGGGGGAAGACGACTGCCAGT
GGATCGATGTCAATGGACTGCCAAGCCATAGGTTGGCCATCTTCTCGCTG
CGCTATTCGCCAACAGGCGACAAAATCATCGGGGGCAGCAACAATTCCAC
GGTCATCGTGACCGACATTCGCACAAGAAACACACAGATCCT
BO14694.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9945-PB | 1536 | CG9945-RB | 1..776 | 17..792 | 3880 | 100 | Plus |
CG9945-PA | 1536 | CG9945-RA | 1..776 | 17..792 | 3880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9945-RA | 1925 | CG9945-RA | 207..982 | 17..792 | 3880 | 100 | Plus |
CG9945-RB | 1949 | CG9945-RB | 81..856 | 17..792 | 3880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:31:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20618953..20619220 | 194..461 | 1340 | 100 | Plus |
2R | 25286936 | 2R | 20619476..20619663 | 605..792 | 925 | 99.5 | Plus |
2R | 25286936 | 2R | 20618709..20618888 | 17..196 | 900 | 100 | Plus |
2R | 25286936 | 2R | 20619279..20619427 | 460..608 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:31:37 has no hits.
BO14694.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:34:20 Download gff for
BO14694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-PA | 1..776 | 17..792 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:45 Download gff for
BO14694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-PA | 1..776 | 17..792 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:30:00 Download gff for
BO14694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-RB | 77..856 | 10..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:46:21 Download gff for
BO14694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-RB | 77..856 | 10..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:46:21 Download gff for
BO14694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20618705..20618888 | 10..196 | 97 | -> | Plus |
2R | 20618956..20619220 | 197..461 | 100 | -> | Plus |
2R | 20619281..20619427 | 462..608 | 100 | -> | Plus |
2R | 20619480..20619663 | 609..792 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:30:00 Download gff for
BO14694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16506786..16506932 | 462..608 | 100 | -> | Plus |
arm_2R | 16506985..16507168 | 609..792 | 100 | | Plus |
arm_2R | 16506210..16506393 | 10..196 | 97 | -> | Plus |
arm_2R | 16506461..16506725 | 197..461 | 100 | -> | Plus |
BO14694.complete Sequence
1567 bp (1567 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ633229
> BO14694.complete
GAAGTTATCAGTCGACATGGGGAACCAATTGGCTATACAGATGAATAGCG
ATGAAGACGACGATTTTGATTCTTCGGACAACGAGCTGGGCTTCAACGTG
ATCAACTTTACGGTGAACGCCATGGATCTGCGCTCCGATTATTGCAGCAG
CGAGATGCCAGTTATACGAGGCAAGCCCGATCTAGTTAAATTTCAGAAAA
CTGATATGTACAAGGAGATCCAGGCGTCGAGTGGATTAGTGAGCAATCCG
AACAATCGCTGGAACCTGGTGCACGCCCTTCAGCAGCGTGAGAATGGGTT
GGCATCGCCGCACAGCGCATCGTTCTCCAAGAACCAGCAGCGCTACATAT
CCAATCTTTACATACCAAACAAAAAGGCCACACGCCTGATGTCGCTGGAA
TCCAAAATATTTGTGACCAAGTTCAATCGTTCGGGCAGCAAGTTGCTGAC
CGCTTGTCAAGATGGCTTTGTGCGCATTTACGATGGCGCCAAGGGCACTT
ATCACCTGCTGAATCGCATCCGAGCCCGCGATGTTGAGTGGAGCATCATC
GATGCGGATTTTAGTCCGAATGGCGAGCACTTCGCCTACAGCACCTGGTC
CCGCTCATTGTTCATCATGCCCGTGAATGGGGGGGAAGACGACTGCCAGT
GGATCGATGTCAATGGACTGCCAAGCCATAGGTTGGCCATCTTCTCGCTG
CGCTATTCGCCAACAGGCGACAAAATCATCGGGGGCAGCAACAATTCCAC
GGTCATCGTGACCGACATTCGCACAAGAAACACACAGATCCTGCGCACCC
ACCGCATGCCCGGCAAGGATGTTAACTCGGTGTGCTTCCTACACGATAAG
GATCCAAATGTGATAATCGCCGGCTGTGACGACGGCCTGCTAAAGGTCTA
CGACCTGCGCACCACCTTCCGTTCACGGGACCTGTCCAAGTCTGTGGCAT
CCTTCATCGGCCACTACGATGGCATCACCTACATCGATTCGCGCAACGAC
GGCTACCACGTGCTGTCCAACTCCAAAGACCAAAGCATCAAAATCTGGGA
CATAAGGCAGCCGAGCAATATGCGTAATCGCAGTCGTTCTAGACAGCAAG
TCGACCCCACCACATGGGACTACCGATGGAACCGCGTTCCGCGGGAATTT
TACAATCCGCATAAGCCACTGGAAGGAGACTCCAGCATAATGACCTACCG
CGGTCACCGAGTTACCAAAACCCTGTTGCGGGCGAAGTTCTCACCCATGG
AGCAGACAGGGCAACGCTACATTTACACAGGCTGTGCCACCGGACGTATT
ATAATTTATGATGTACTTACTGGTAAGATTCAAGAGGCTATTGAAGGACA
TAGGACTGTGATAAGAGATCTGGACTGGCATCCGGATCGCTCAGAAATCG
TGTCTGGCTCGTGGGACACCCATGTTCACCTGAACAACTTCAGCCGCAGC
AACGCCAATCGTCCGGTAAAGCGATCACATAGCTCGGATCATGACAAAAA
GCCCCTGAGAAGATCACGCCGTTTGGCGAATCGCAATGTAACACCGGACG
CAAGCTTTCTAGACCAT
BO14694.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9945-RA | 1536 | CG9945-PA | 1..1533 | 17..1549 | 7620 | 99.8 | Plus |
CG9945-RB | 1536 | CG9945-PB | 1..1533 | 17..1549 | 7620 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9945-RA | 1925 | CG9945-RA | 207..1739 | 17..1549 | 7620 | 99.8 | Plus |
CG9945-RB | 1949 | CG9945-RB | 81..1613 | 17..1549 | 7620 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20619476..20620019 | 605..1148 | 2705 | 99.8 | Plus |
2R | 25286936 | 2R | 20618953..20619220 | 194..461 | 1340 | 100 | Plus |
2R | 25286936 | 2R | 20618709..20618888 | 17..196 | 900 | 100 | Plus |
2R | 25286936 | 2R | 20620080..20620235 | 1149..1304 | 780 | 100 | Plus |
2R | 25286936 | 2R | 20619279..20619427 | 460..608 | 745 | 100 | Plus |
2R | 25286936 | 2R | 20620607..20620745 | 1411..1549 | 650 | 97.8 | Plus |
2R | 25286936 | 2R | 20620438..20620544 | 1305..1411 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:33:49 has no hits.
BO14694.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:50 Download gff for
BO14694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-RA | 1..1536 | 17..1550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:11:21 Download gff for
BO14694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-RA | 203..1745 | 10..1558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:03 Download gff for
BO14694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-RB | 81..1613 | 17..1551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:50 Download gff for
BO14694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-RA | 203..1745 | 10..1558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:03 Download gff for
BO14694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-RB | 81..1613 | 17..1551 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:03 Download gff for
BO14694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20618956..20619220 | 197..461 | 100 | -> | Plus |
2R | 20619281..20619427 | 462..608 | 100 | -> | Plus |
2R | 20618709..20618888 | 17..196 | 100 | -> | Plus |
2R | 20619480..20620019 | 609..1148 | 100 | -> | Plus |
2R | 20620080..20620235 | 1149..1304 | 100 | -> | Plus |
2R | 20620438..20620544 | 1305..1411 | 100 | -> | Plus |
2R | 20620608..20620745 | 1412..1551 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:03 Download gff for
BO14694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16506214..16506393 | 17..196 | 100 | -> | Plus |
arm_2R | 16506461..16506725 | 197..461 | 100 | -> | Plus |
arm_2R | 16506786..16506932 | 462..608 | 100 | -> | Plus |
arm_2R | 16506985..16507524 | 609..1148 | 100 | -> | Plus |
arm_2R | 16507585..16507740 | 1149..1304 | 100 | -> | Plus |
arm_2R | 16507943..16508049 | 1305..1411 | 100 | -> | Plus |
arm_2R | 16508113..16508250 | 1412..1551 | 96 | | Plus |
BO14694.pep Sequence
Translation from 16 to 1567
> BO14694.pep
MGNQLAIQMNSDEDDDFDSSDNELGFNVINFTVNAMDLRSDYCSSEMPVI
RGKPDLVKFQKTDMYKEIQASSGLVSNPNNRWNLVHALQQRENGLASPHS
ASFSKNQQRYISNLYIPNKKATRLMSLESKIFVTKFNRSGSKLLTACQDG
FVRIYDGAKGTYHLLNRIRARDVEWSIIDADFSPNGEHFAYSTWSRSLFI
MPVNGGEDDCQWIDVNGLPSHRLAIFSLRYSPTGDKIIGGSNNSTVIVTD
IRTRNTQILRTHRMPGKDVNSVCFLHDKDPNVIIAGCDDGLLKVYDLRTT
FRSRDLSKSVASFIGHYDGITYIDSRNDGYHVLSNSKDQSIKIWDIRQPS
NMRNRSRSRQQVDPTTWDYRWNRVPREFYNPHKPLEGDSSIMTYRGHRVT
KTLLRAKFSPMEQTGQRYIYTGCATGRIIIYDVLTGKIQEAIEGHRTVIR
DLDWHPDRSEIVSGSWDTHVHLNNFSRSNANRPVKRSHSSDHDKKPLRRS
RRLANRNVTPDASFLDH
BO14694.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9945-PA | 511 | CG9945-PA | 1..511 | 1..511 | 2719 | 100 | Plus |
CG9945-PB | 511 | CG9945-PB | 1..511 | 1..511 | 2719 | 100 | Plus |
CG3436-PC | 347 | CG3436-PC | 9..342 | 129..472 | 225 | 26 | Plus |
CG3436-PA | 347 | CG3436-PA | 9..342 | 129..472 | 225 | 26 | Plus |
wds-PB | 361 | CG17437-PB | 80..347 | 182..465 | 174 | 22.9 | Plus |