Clone Sequence Records
BO14714.3prime Sequence
803 bp (761 high quality bases) assembled on 2006-06-02
> BO14714.3prime
ATGGTCTAGAAAGCTTGCATCAGTCCAGGAGTCGCCGTATTGGTTCTTCC
TTCCAGCGGGTTCACTTTGTGCCTGCTCCACGGGTCGCTGTTGAACGGCA
ACTGGTGGTTCGTAAGGTCGCGAGTATGGACTCTGCTGGTGCTTTGAGTA
CTCTTCTCGGTTCCTTCGTCGCAGGTCCTCGTAAGACTGGCCCGGCTTAG
ACGGCTCCAAGGGCAACTCCGCCTCCAGCATTGAACCAGAGTCCAGGGTG
GGGCGGTAGATGTCGTCAAGGCCGGACAAAGTAGGGCGCGATTCCGTGTC
CAGATTGAGAGAAGTGCTCCTCCCGGGCTGATACGCCTCATCGCTGTACA
CGTCCGCCGAGCTCGGCGAGAAGGGGGCCAGAGTGAAGGCCCTGCCCAGA
TTCTCGTCCGGTGTGATGGAGCTGATGACACCGCCGCCCTGTCTACGCTG
ACGCAGCAGCTCGCCCAGATGGGAGTTGGGTAGGCGCATGATCTTCTCGG
CACACTTCTGCTGGTAACTGAACTTGCCCACAAAGTAGCCCAGAATGACG
CCCATCACGACCTTGGGCACGGCGCCGTACTTGACGTGTCCCTGCAAATA
GCCGTTCTTGACGCCGAAGTAGGCCAGCAGGCCCAGTCCAGTGCCGAAAG
GCAGGCTGCGCTGGAAGAAAGACTCAGTGTTGCACTCACGTAACGCCTTC
ACCTCCTCCGCAGAAAACTGATAGTCCGCCAGGGGGTGGGGAGCGTGCGG
CGGTGGATGGTGAGAGCCATCGTTCAGCGGGGAGTCCATGTCGACTGATA
ACT
BO14714.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13533-PA | 774 | asrij-RA | 1..771 | 789..19 | 3780 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:02:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
asrij-RA | 1064 | CG13533-RA | 245..1016 | 790..19 | 3815 | 99.6 | Minus |
asrij-RB | 904 | CG13533-RB | 82..856 | 790..19 | 3775 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:01:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22886758..22887248 | 730..240 | 2455 | 100 | Minus |
2R | 25286936 | 2R | 22887310..22887530 | 239..19 | 1060 | 98.6 | Minus |
2R | 25286936 | 2R | 22886642..22886703 | 790..729 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:02:02 has no hits.
BO14714.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:34:39 Download gff for
BO14714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-PA | 1..774 | 15..789 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:33:08 Download gff for
BO14714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13533-PA | 1..774 | 15..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:28:23 Download gff for
BO14714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-RA | 239..1020 | 14..800 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:38:52 Download gff for
BO14714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-RA | 239..1020 | 14..800 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:38:52 Download gff for
BO14714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22886636..22886702 | 730..800 | 94 | -> | Minus |
2R | 22886759..22887248 | 240..729 | 100 | -> | Minus |
2R | 22887310..22887534 | 14..239 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:28:23 Download gff for
BO14714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18774159..18774225 | 730..800 | 94 | -> | Minus |
arm_2R | 18774282..18774771 | 240..729 | 100 | -> | Minus |
arm_2R | 18774833..18775057 | 14..239 | 97 | | Minus |
BO14714.5prime Sequence
758 bp (729 high quality bases) assembled on 2006-06-16
> BO14714.5prime
GAAGTTATCAGTCGACATGGACTCCCCGCTGAACGATGGCTCTCACCATC
CACCGCCGCACGCTCCCCACCCCCTGGCGGACTATCAGTTTTCTGCGGAG
GAGGTGAAGGCGTTACGTGAGTGCAACACTGAGTCTTTCTTCCAGCGCAG
CCTGCCTTTCGGCACTGGACTGGGCCTGCTGGCCTACTTCGGCGTCAAGA
ACGGCTATTTGCAGGGACACGTCAAGTACGGCGCCGTGCCCAAGGTCGTG
ATGGGCGTCATTCTGGGCTACTTTGTGGGCAAGTTCAGTTACCAGCAGAA
GTGTGCCGAGAAGATCATGCGCCTACCCAACTCCCATCTGGGCGAGCTGC
TGCGTCAGCGTAGACAGGGCGGCGGTGTCATCAGCTCCATCACACCGGAC
GAGAATCTGGGCAGGGCCTTCACTCTGGCCCCCTTCTCGCCGAGCTCGGC
GGACGTGTACAGCGATGAGGCGTATCAGCCCGGGAGGAGCACTTCTCTCA
ATCTGGACACGGAATCGCGCCCTACTTTGTCCGGCCTTGACGACATCTAC
CGCCCCACCCTGGACTCTGGTTCAATGCTGGAGGCGGAGTTGCCCTTGGA
GCCGTCTAAGCCGGGCCAGTCTTACGAGGACCTGCGACGAAGGAACCGAG
AAGAGTACTCAAAGCACCAGCAGAGTCCATACTCGCGACCTTACGAACCA
CCAGTTGCCGTTCAACAGCGACCCGTGGAGCAAGCACAAAGTGAACCCGC
TGGAAGGA
BO14714.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13533-PA | 774 | asrij-RA | 1..742 | 17..758 | 3610 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:27:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
asrij-RA | 1064 | CG13533-RA | 245..987 | 16..758 | 3655 | 99.5 | Plus |
asrij-RB | 904 | CG13533-RB | 82..827 | 16..758 | 3615 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:27:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22886758..22887248 | 76..566 | 2455 | 100 | Plus |
2R | 25286936 | 2R | 22887310..22887501 | 567..758 | 900 | 97.9 | Plus |
2R | 25286936 | 2R | 22886642..22886703 | 16..77 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:27:41 has no hits.
BO14714.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:34:39 Download gff for
BO14714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-PA | 1..741 | 17..757 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:33:09 Download gff for
BO14714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13533-PA | 1..741 | 17..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:09:05 Download gff for
BO14714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-RA | 239..986 | 6..757 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:21:08 Download gff for
BO14714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-RA | 239..986 | 6..757 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:21:08 Download gff for
BO14714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22886636..22886702 | 6..76 | 94 | -> | Plus |
2R | 22886759..22887248 | 77..566 | 100 | -> | Plus |
2R | 22887310..22887500 | 567..757 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:09:05 Download gff for
BO14714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18774833..18775023 | 567..757 | 97 | | Plus |
arm_2R | 18774159..18774225 | 6..76 | 94 | -> | Plus |
arm_2R | 18774282..18774771 | 77..566 | 100 | -> | Plus |
BO14714.complete Sequence
805 bp (805 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633232
> BO14714.complete
GAAGTTATCAGTCGACATGGACTCCCCGCTGAACGATGGCTCTCACCATC
CACCGCCGCACGCTCCCCACCCCCTGGCGGACTATCAGTTTTCTGCGGAG
GAGGTGAAGGCGTTACGTGAGTGCAACACTGAGTCTTTCTTCCAGCGCAG
CCTGCCTTTCGGCACTGGACTGGGCCTGCTGGCCTACTTCGGCGTCAAGA
ACGGCTATTTGCAGGGACACGTCAAGTACGGCGCCGTGCCCAAGGTCGTG
ATGGGCGTCATTCTGGGCTACTTTGTGGGCAAGTTCAGTTACCAGCAGAA
GTGTGCCGAGAAGATCATGCGCCTACCCAACTCCCATCTGGGCGAGCTGC
TGCGTCAGCGTAGACAGGGCGGCGGTGTCATCAGCTCCATCACACCGGAC
GAGAATCTGGGCAGGGCCTTCACTCTGGCCCCCTTCTCGCCGAGCTCGGC
GGACGTGTACAGCGATGAGGCGTATCAGCCCGGGAGGAGCACTTCTCTCA
ATCTGGACACGGAATCGCGCCCTACTTTGTCCGGCCTTGACGACATCTAC
CGCCCCACCCTGGACTCTGGTTCAATGCTGGAGGCGGAGTTGCCCTTGGA
GCCGTCTAAGCCGGGCCAGTCTTACGAGGACCTGCGACGAAGGAACCGAG
AAGAGTACTCAAAGCACCAGCAGAGTCCATACTCGCGACCTTACGAACCA
CCAGTTGCCGTTCAACAGCGACCCGTGGAGCAGGCACAAAGTGAACCCGC
TGGAAGGAAGAACCAATACGGCGACTCCTGGACTGATGCAAGCTTTCTAG
ACCAT
BO14714.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
asrij-RA | 774 | CG13533-PA | 1..771 | 17..787 | 3810 | 99.6 | Plus |
asrij-RB | 777 | CG13533-PB | 1..774 | 17..787 | 3745 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:19:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
asrij-RA | 1064 | CG13533-RA | 245..1016 | 16..787 | 3815 | 99.6 | Plus |
asrij-RB | 904 | CG13533-RB | 82..856 | 16..787 | 3750 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:18:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22886758..22887248 | 76..566 | 2455 | 100 | Plus |
2R | 25286936 | 2R | 22887310..22887530 | 567..787 | 1060 | 98.6 | Plus |
2R | 25286936 | 2R | 22886642..22886703 | 16..77 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:18:58 has no hits.
BO14714.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:50 Download gff for
BO14714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-RA | 1..774 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:42 Download gff for
BO14714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-RA | 239..1020 | 6..792 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:21 Download gff for
BO14714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-RA | 246..1016 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:51 Download gff for
BO14714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-RA | 239..1020 | 6..792 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:12 Download gff for
BO14714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-RA | 246..1016 | 17..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:12 Download gff for
BO14714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22886643..22886702 | 17..76 | 100 | -> | Plus |
2R | 22886759..22887248 | 77..566 | 100 | -> | Plus |
2R | 22887310..22887530 | 567..789 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:21 Download gff for
BO14714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18774166..18774225 | 17..76 | 100 | -> | Plus |
arm_2R | 18774282..18774771 | 77..566 | 100 | -> | Plus |
arm_2R | 18774833..18775053 | 567..789 | 97 | | Plus |
BO14714.pep Sequence
Translation from 16 to 805
> BO14714.pep
MDSPLNDGSHHPPPHAPHPLADYQFSAEEVKALRECNTESFFQRSLPFGT
GLGLLAYFGVKNGYLQGHVKYGAVPKVVMGVILGYFVGKFSYQQKCAEKI
MRLPNSHLGELLRQRRQGGGVISSITPDENLGRAFTLAPFSPSSADVYSD
EAYQPGRSTSLNLDTESRPTLSGLDDIYRPTLDSGSMLEAELPLEPSKPG
QSYEDLRRRNREEYSKHQQSPYSRPYEPPVAVQQRPVEQAQSEPAGRKNQ
YGDSWTDASFLDH
BO14714.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
asrij-PA | 257 | CG13533-PA | 1..257 | 1..257 | 1365 | 100 | Plus |
asrij-PB | 258 | CG13533-PB | 1..258 | 1..257 | 1353 | 99.6 | Plus |