Clone BO14726 Report

Search the DGRC for BO14726

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:147
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptRacGAP84C-RA
Protein status:BO14726.pep: validated full length
Sequenced Size:1186

Clone Sequence Records

BO14726.5prime Sequence

763 bp (707 high quality bases) assembled on 2006-06-02

> BO14726.5prime
GAAGTTATCAGTCGACATGATTAGTGGCTCTGGGAGTCGGACGCCCTCAA
ATCGACTTTATTTGTCGCCCGTTCGCCCCACGATGCAGAACAAACGGAGG
CTTCTGCGGGAGTACAGGTCCTACGATGACCTCAGCGAGCACTACCGCAT
GTTTGGATCGCAGTCCCTGGACTCGCTGCAGGATCGCGTGGACATGAATC
CCAGTGGCTGCGATGGCTTATCCACGGACGGACTCGACTTCTGCTCGCAG
TCCCACTCGGGGCTGCTGAGGGAGCACAATTTCAAGATTAAGTCCTACTA
CTACAACGTGGGGAACTGCGTACACTGCCGCAAAAGGATCCGCTTCGCCA
TGGCCAGCCTGAGGTGTCGGGCGTGTCCGCTCCGCTGCCACATCGGTTGC
TGCCGCCAGCTGACGGTGAACTGCATCCCCCAGCCTCAAATCGGTACGAA
GAGAGGATGTCTCAGCGATTATGCGCCTCGGGTGGCGCCCATGGTGCCGG
CCTTAATTGTCCATTGTGTAACGGAGATCGAGGCGCGGGGATTGCAGCAG
GAGGGACTCTACCGGGTGTCCTCCACCCGAGAGAAATGCAAACGACTGCG
TCGGAAGCTGCTGCGTGGCAAGTCCACGCCGCATTTGGGCAATAAAGACA
CCCACACACTGTGCTGTTGTGTTAAGGACTTTCTTCCGGAGTTGGGTTCA
CCCTCTGATTCCCATTTACCACCGAAGGGATTTCGAGGAGGCCACGCGGC
ACGAAGATCGTCT

BO14726.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2595-PA 1155 RacGAP84C-RA 1..670 17..686 3350 100 Plus
CG2595-PB 1152 RacGAP84C-RB 1..670 17..686 3350 100 Plus
CG2595-PA 1155 RacGAP84C-RA 678..746 695..763 345 100 Plus
CG2595-PB 1152 RacGAP84C-RB 678..746 695..763 345 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
RacGAP84C-RB 1354 CG2595-RB 144..889 17..763 3680 99.6 Plus
RacGAP84C-RA 1412 CG2595-RA 144..889 17..763 3680 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7286559..7286986 335..763 2065 99.3 Plus
3R 32079331 3R 7286105..7286425 17..337 1605 100 Plus
Blast to na_te.dros performed on 2015-02-04 01:45:45 has no hits.

BO14726.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:34:51 Download gff for BO14726.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2595-PB 1..746 17..763 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:33:25 Download gff for BO14726.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2595-PB 1..746 17..763 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:39:18 Download gff for BO14726.5prime
Subject Subject Range Query Range Percent Splice Strand
RacGAP84C-RA 144..889 17..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:16:54 Download gff for BO14726.5prime
Subject Subject Range Query Range Percent Splice Strand
RacGAP84C-RA 144..889 17..763 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:16:54 Download gff for BO14726.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7286105..7286424 17..336 100 -> Plus
3R 7286561..7286986 337..763 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:39:18 Download gff for BO14726.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3111827..3112146 17..336 100 -> Plus
arm_3R 3112283..3112708 337..763 99   Plus

BO14726.complete Sequence

1186 bp (1186 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ638732

> BO14726.complete
GAAGTTATCAGTCGACATGATTAGTGGCTCTGGGAGTCGGACGCCCTCAA
ATCGACTTTATTTGTCGCCCGTTCGCCCCACGATGCAGAACAAACGGAGG
CTTCTGCGGGAGTACAGGTCCTACGATGACCTCAGCGAGCACTACCGCAT
GTTTGGATCGCAGTCCCTGGACTCGCTGCAGGATCGCGTGGACATGAATC
CCAGTGGCTGCGATGGCTTATCCACGGACGGACTCGACTTCTGCTCGCAG
TCCCACTCGGGGCTGCTGAGGGAGCACAATTTCAAGATTAAGTCCTACTA
CTACAACGTGGGGAACTGCGTACACTGCCGCAAAAGGATCCGCTTCGCCA
TGGCCAGCCTGAGGTGTCGGGCGTGTCCGCTCCGCTGCCACATCGGTTGC
TGCCGCCAGCTGACGGTGAACTGCATCCCCCAGCCTCAAATCGGTACGAA
GAGAGGATGTCTCAGCGATTATGCGCCTCGGGTGGCGCCCATGGTGCCGG
CCTTAATTGTCCATTGTGTAACGGAGATCGAGGCGCGGGGATTGCAGCAG
GAGGGACTCTACCGGGTGTCCTCCACCCGAGAGAAATGCAAACGACTGCG
TCGGAAGCTGCTGCGTGGCAAGTCCACGCCGCATTTGGGCAATAAAGACA
CCCACACACTGTGCTGTTGTGTTAAGGACTTTCTTCGGCAGTTGGTTCAC
CCTCTGATTCCCATTTACCACCGAAGGGATTTCGAGGAGGCCACGCGGCA
CGAAGATCGTCTGGCTGTGGAGATGGCGGTATATTTAGCGGTTCTGGAGC
TGCATCAGGCTCACAGGGATACGTTGGCCTACTTAATGCTTCACTGGCAG
AAAATTGCCGAAAGTCCTGCTGTCCGCATGACGGTCAACAATCTTGCCGT
GATCTTCGCTCCAACTCTGTTCGGAGATCTGGATCTAACCCTCGAAAATG
TCGTCACTTGGCAGCGGGTGCTGAAGGTGCTACTTCTGATGCCTGCCGGA
TTTTGGTCTCAGTTCTTGGAGGTCCATCCCCTTCCCACTTCGTTGGGCAG
CACCTATGACTTTGAGGACCGGTACAATCACCGTCACTGGGACAGCTCGT
CCAATCTGGGATGGTCTTCTGTTAAGACCTACTTTAGATCAATGGTCAAC
CTTAGCAGTACTCACCTAGCAAGCTTTCTAGACCAT

BO14726.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
RacGAP84C-RA 1155 CG2595-PA 1..1152 17..1168 5760 100 Plus
RacGAP84C-RB 1152 CG2595-PB 1..1130 17..1146 5650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
RacGAP84C-RA 1412 CG2595-RA 144..1295 17..1168 5760 100 Plus
RacGAP84C-RB 1354 CG2595-RB 144..1273 17..1146 5650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7286559..7287370 335..1146 4060 100 Plus
3R 32079331 3R 7286105..7286425 17..337 1605 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:16:21 has no hits.

BO14726.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:52 Download gff for BO14726.complete
Subject Subject Range Query Range Percent Splice Strand
RacGAP84C-RA 1..1155 17..1169 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:44 Download gff for BO14726.complete
Subject Subject Range Query Range Percent Splice Strand
RacGAP84C-RA 743..1894 17..1168 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:27 Download gff for BO14726.complete
Subject Subject Range Query Range Percent Splice Strand
RacGAP84C-RA 144..1295 17..1170 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:52 Download gff for BO14726.complete
Subject Subject Range Query Range Percent Splice Strand
RacGAP84C-RA 743..1894 17..1168 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:20 Download gff for BO14726.complete
Subject Subject Range Query Range Percent Splice Strand
RacGAP84C-RA 144..1295 17..1170 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:20 Download gff for BO14726.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7286105..7286424 17..336 100 -> Plus
3R 7286561..7287368 337..1144 100 -> Plus
3R 7287489..7287512 1145..1170 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:27 Download gff for BO14726.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3111827..3112146 17..336 100 -> Plus
arm_3R 3112283..3113090 337..1144 100 -> Plus
arm_3R 3113211..3113234 1145..1170 92   Plus

BO14726.pep Sequence

Translation from 16 to 1186

> BO14726.pep
MISGSGSRTPSNRLYLSPVRPTMQNKRRLLREYRSYDDLSEHYRMFGSQS
LDSLQDRVDMNPSGCDGLSTDGLDFCSQSHSGLLREHNFKIKSYYYNVGN
CVHCRKRIRFAMASLRCRACPLRCHIGCCRQLTVNCIPQPQIGTKRGCLS
DYAPRVAPMVPALIVHCVTEIEARGLQQEGLYRVSSTREKCKRLRRKLLR
GKSTPHLGNKDTHTLCCCVKDFLRQLVHPLIPIYHRRDFEEATRHEDRLA
VEMAVYLAVLELHQAHRDTLAYLMLHWQKIAESPAVRMTVNNLAVIFAPT
LFGDLDLTLENVVTWQRVLKVLLLMPAGFWSQFLEVHPLPTSLGSTYDFE
DRYNHRHWDSSSNLGWSSVKTYFRSMVNLSSTHLASFLDH

BO14726.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
RacGAP84C-PA 384 CG2595-PA 1..384 1..384 2062 100 Plus
RacGAP84C-PB 383 CG2595-PB 1..377 1..377 2027 100 Plus
tum-PA 625 CG13345-PA 312..581 80..341 679 48.3 Plus
RhoGAP5A-PA 494 CG3208-PA 240..463 85..301 213 29.1 Plus
RhoGAP18B-PH 468 CG42274-PH 289..440 158..310 156 31 Plus