Clone Sequence Records
BO14730.3prime Sequence
728 bp (648 high quality bases) assembled on 2006-06-16
> BO14730.3prime
ATGGTCTAGAAAGCTTGCGGAGGAGCCCATTGGGTTGACGGCGTTTGTCT
GCAGGTTCTTGAGCAGCATCTGCAGCCACTGCTTGGTGCACGTGTCATGT
TGGACGAGCGACGTGAAGGTGCCGTCACGCAGCAGATCGGGCAGACACAC
TCTAAGTGCACTGCGAGCGCGCGCATTTTCCGTAAGTAGTAGATAGCAGC
GCACCACATGCTTCAGCACCCGGAGGCATGGAAACTTCAACATATGGATG
ACCATTTTGCCCAGGGTGATGGCCACCTGCGAGAAGCGATCGTGGTTCTC
GCAAATGTACGTCAGACCCATCTCATCGAGCAGTATCTTCTCAAGGATTG
AAGTGGCCGCGATCTTGGTCAGCTTCGATCCCCTGACCATATTGGTCAGA
CAGTGAGGCACGACCTCGCTCCATATCAGGAAGATGAGGACCTCCGTATC
ACCGGTCTCGGCCAGAGCATTAATCACGCCCAGCGTGGTCAGGCGCAGCT
GCTCGAAGGGCCTGCTCTTGAACGTGGTCGACAAGAAGGGGTACAAGTAC
ATCGGTATCTGGTCCCGCAGGAAGGCCGGGCGAGTCTCCGGATGCGAGGC
GACGCACTGTAGCAAAGTCAGGGCGTAGCACACGCGGTTCGACTGGTTGG
CCTTCAAAACGGGCGTCGTTATTATGGGGTATATGTTGACGATCTCCTGC
AGCAGGGTGCAGGTGGTACCGACGCTTT
BO14730.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9573-PA | 873 | CG9573-RA | 161..870 | 728..19 | 3500 | 99.7 | Minus |
CG14213-PB | 915 | CG14213-RB | 307..414 | 609..502 | 340 | 92.5 | Minus |
CG14213-PA | 915 | CG14213-RA | 307..414 | 609..502 | 340 | 92.5 | Minus |
CG14213-PB | 915 | CG14213-RB | 575..671 | 341..245 | 210 | 88.6 | Minus |
CG14213-PA | 915 | CG14213-RA | 575..671 | 341..245 | 210 | 88.6 | Minus |
CG14213-PB | 915 | CG14213-RB | 829..864 | 87..52 | 180 | 100 | Minus |
CG14213-PA | 915 | CG14213-RA | 829..864 | 87..52 | 180 | 100 | Minus |
CG14213-PB | 915 | CG14213-RB | 768..800 | 148..116 | 140 | 96.9 | Minus |
CG14213-PA | 915 | CG14213-RA | 768..800 | 148..116 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd-1r-RA | 1184 | CG9573-RA | 307..1016 | 728..19 | 3520 | 99.7 | Minus |
CG13102-RB | 1835 | CG13102-RB | 739..1448 | 19..728 | 3520 | 99.7 | Plus |
Rcd-1-RC | 1725 | CG14213-RC | 724..1398 | 726..52 | 1530 | 82.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9013053..9013762 | 19..728 | 3520 | 99.7 | Plus |
X | 23542271 | X | 19639551..19639815 | 726..462 | 755 | 85.7 | Minus |
X | 23542271 | X | 19639934..19640091 | 418..261 | 340 | 81 | Minus |
X | 23542271 | X | 19640301..19640419 | 170..52 | 280 | 82.4 | Minus |
X | 23542271 | X | 19640147..19640234 | 262..175 | 215 | 83 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:59:56 has no hits.
BO14730.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:34:55 Download gff for
BO14730.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9573-PA | 161..873 | 18..728 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:33:31 Download gff for
BO14730.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9573-PA | 161..873 | 18..728 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:48:28 Download gff for
BO14730.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RB | 739..1448 | 19..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:30:46 Download gff for
BO14730.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RB | 739..1448 | 19..728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:30:46 Download gff for
BO14730.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9013053..9013762 | 19..728 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:48:28 Download gff for
BO14730.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9013053..9013762 | 19..728 | 99 | | Plus |
BO14730.5prime Sequence
668 bp (667 high quality bases) assembled on 2006-06-16
> BO14730.5prime
GAAGTTATCAGTCGACATGAGTGCGGAACCAAGTCCGGTAATGAGTCCCC
AGCAGCAGGCCGAGCGGGAGAAGGTGTACCAGTTGATCATCGAGCTGGCC
TATCCTGCCACGCGGGAGACCGCTCTGCTGGAGCTGAGCAAGAACACCTA
TGCGGACCTGGCCCCCATGCTGTGGAAAAGCGTCGGTACCACCTGCACCC
TGCTGCAGGAGATCGTCAACATATACCCCATAATAACGACGCCCGTTTTG
AAGGCCAACCAGTCGAACCGCGTGTGCTACGCCCTGACTTTGCTACAGTG
CGTCGCCTCGCATCCGGAGACTCGCCCGGCCTTCCTGCGGGACCAGATAC
CGATGTACTTGTACCCCTTCTTGTCGACCACGTTCAAGAGCAGGCCCTTC
GAGCAGCTGCGCCTGACCACGCTGGGCGTGATTAATGCTCTGGCCGAGAC
CGGTGATACGGAGGTCCTCATCTTCCTGATATGGAGCGAGGTCGTGCCTC
ACTGTCTGACCAATATGGTCAGGGGATCGAAGCTGACCAAGATCGCGGCC
ACTTCAATCCTTGAGAAGATACTGCTCGATGAGATGGGTCTGACGTACAT
TTGCGAGAACCACGATCGCTTCTCGCAGGTGGCCATCACCCTGGGCAAAA
TGGTCATCCATATGTTGA
BO14730.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9573-PA | 873 | CG9573-RA | 1..652 | 17..668 | 3260 | 100 | Plus |
CG14213-PB | 915 | CG14213-RB | 307..414 | 296..403 | 340 | 92.5 | Plus |
CG14213-PA | 915 | CG14213-RA | 307..414 | 296..403 | 340 | 92.5 | Plus |
CG14213-PB | 915 | CG14213-RB | 575..671 | 564..660 | 210 | 88.6 | Plus |
CG14213-PA | 915 | CG14213-RA | 575..671 | 564..660 | 210 | 88.6 | Plus |
CG14213-PB | 915 | CG14213-RB | 61..155 | 50..144 | 175 | 87.3 | Plus |
CG14213-PA | 915 | CG14213-RA | 61..155 | 50..144 | 175 | 87.3 | Plus |
CG14213-PB | 915 | CG14213-RB | 164..224 | 153..213 | 155 | 90.1 | Plus |
CG14213-PA | 915 | CG14213-RA | 164..224 | 153..213 | 155 | 90.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd-1r-RA | 1184 | CG9573-RA | 147..798 | 17..668 | 3260 | 100 | Plus |
CG13102-RB | 1835 | CG13102-RB | 957..1608 | 668..17 | 3260 | 100 | Minus |
Rcd-1-RA | 1612 | CG14213-RA | 482..1092 | 50..660 | 1480 | 83.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9013271..9013922 | 668..17 | 3260 | 100 | Minus |
X | 23542271 | X | 19639444..19639815 | 72..443 | 1020 | 84.9 | Plus |
X | 23542271 | X | 19639934..19640091 | 487..644 | 340 | 81 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:38:48 has no hits.
BO14730.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:34:56 Download gff for
BO14730.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9573-PA | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:33:33 Download gff for
BO14730.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9573-PA | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:30:43 Download gff for
BO14730.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RB | 958..1610 | 13..667 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:04:14 Download gff for
BO14730.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RB | 958..1610 | 13..667 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:04:14 Download gff for
BO14730.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9013272..9013924 | 13..667 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:30:43 Download gff for
BO14730.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9013272..9013924 | 13..667 | 99 | | Minus |
BO14730.complete Sequence
904 bp (904 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633233
> BO14730.complete
GAAGTTATCAGTCGACATGAGTGCGGAACCAAGTCCGGTAATGAGTCCCC
AGCAGCAGGCCGAGCGGGAGAAGGTGTACCAGTTGATCATCGAGCTGGCC
TATCCTGCCACGCGGGAGACCGCTCTGCTGGAGCTGAGCAAGAACACCTA
TGCGGACCTGGCCCCCATGCTGTGGAAAAGCGTCGGTACCACCTGCACCC
TGCTGCAGGAGATCGTCAACATATACCCCATAATAACGACGCCCGTTTTG
AAGGCCAACCAGTCGAACCGCGTGTGCTACGCCCTGACTTTGCTACAGTG
CGTCGCCTCGCATCCGGAGACTCGCCCGGCCTTCCTGCGGGACCAGATAC
CGATGTACTTGTACCCCTTCTTGTCGACCACGTTCAAGAGCAGGCCCTTC
GAGCAGCTGCGCCTGACCACGCTGGGCGTGATTAATGCTCTGGCCGAGAC
CGGTGATACGGAGGTCCTCATCTTCCTGATATGGAGCGAGGTCGTGCCTC
ACTGTCTGACCAATATGGTCAGGGGATCGAAGCTGACCAAGATCGCGGCC
ACTTCAATCCTTGAGAAGATACTGCTCGATGAGATGGGTCTGACGTACAT
TTGCGAGAACCACGATCGCTTCTCGCAGGTGGCCATCACCCTGGGCAAAA
TGGTCATCCATATGTTGAAGTTTCCATGCCTCCGGGTGCTGAAGCATGTG
GTGCGCTGCTATCTACTACTTACGGAAAATGCGCGCGCTCGCAGTGCACT
TAGAGTGTGTCTGCCCGATCTGCTGCGTGACGGCACCTTCACGTCGCTCG
TCCAACATGACACGTGCACCAAGCAGTGGCTGCAGATGCTGCTCAAGAAC
CTGCAGACAAACGCCGTCAACCCAATGGGCTCCTCCGCAAGCTTTCTAGA
CCAT
BO14730.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd-1r-RA | 873 | CG9573-PA | 1..870 | 17..886 | 4320 | 99.8 | Plus |
Rcd-1-RA | 915 | CG14213-PA | 61..864 | 50..853 | 1875 | 82.2 | Plus |
Rcd-1-RB | 915 | CG14213-PB | 61..864 | 50..853 | 1875 | 82.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:00:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd-1r-RA | 1184 | CG9573-RA | 147..1016 | 17..886 | 4320 | 99.8 | Plus |
CG13102-RB | 1835 | CG13102-RB | 739..1608 | 886..17 | 4320 | 99.8 | Minus |
Rcd-1-RA | 1612 | CG14213-RA | 482..1285 | 50..853 | 1875 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9013053..9013922 | 886..17 | 4320 | 99.8 | Minus |
X | 23542271 | X | 19639444..19639815 | 72..443 | 1020 | 84.9 | Plus |
X | 23542271 | X | 19639934..19640091 | 487..644 | 340 | 81 | Plus |
X | 23542271 | X | 19640301..19640419 | 735..853 | 280 | 82.4 | Plus |
X | 23542271 | X | 19640147..19640234 | 643..730 | 215 | 83 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:59:58 has no hits.
BO14730.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:55 Download gff for
BO14730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9573-RA | 1..873 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:08 Download gff for
BO14730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9573-RA | 147..1018 | 13..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:40:08 Download gff for
BO14730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RB | 737..1608 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:55 Download gff for
BO14730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9573-RA | 147..1018 | 13..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:56 Download gff for
BO14730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RB | 737..1608 | 17..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:56 Download gff for
BO14730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9013051..9013922 | 17..888 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:40:08 Download gff for
BO14730.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9013051..9013922 | 17..888 | 99 | | Minus |
BO14730.pep Sequence
Translation from 16 to 904
> BO14730.pep
MSAEPSPVMSPQQQAEREKVYQLIIELAYPATRETALLELSKNTYADLAP
MLWKSVGTTCTLLQEIVNIYPIITTPVLKANQSNRVCYALTLLQCVASHP
ETRPAFLRDQIPMYLYPFLSTTFKSRPFEQLRLTTLGVINALAETGDTEV
LIFLIWSEVVPHCLTNMVRGSKLTKIAATSILEKILLDEMGLTYICENHD
RFSQVAITLGKMVIHMLKFPCLRVLKHVVRCYLLLTENARARSALRVCLP
DLLRDGTFTSLVQHDTCTKQWLQMLLKNLQTNAVNPMGSSASFLDH
BO14730.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd-1r-PA | 290 | CG9573-PA | 1..290 | 1..290 | 1490 | 100 | Plus |
Rcd-1-PA | 304 | CG14213-PA | 1..304 | 1..289 | 976 | 65.5 | Plus |
Rcd-1-PB | 304 | CG14213-PB | 1..304 | 1..289 | 976 | 65.5 | Plus |
Rcd-1-PC | 301 | CG14213-PC | 1..301 | 1..289 | 954 | 64.5 | Plus |
CG2053-PB | 298 | CG2053-PB | 3..258 | 6..258 | 343 | 34.4 | Plus |