Clone Sequence Records
BO14748.5prime Sequence
383 bp (383 high quality bases) assembled on 2006-06-16
> BO14748.5prime
GAAGTTATCAGTCGACATGGCCAGCCAGACGCAGGGAATCCAGCAGTTGC
TCGCTGCCGAGAAAAAGGCAGCCGAGAAGGTCGCCGAGGCTCGTAAACGC
AAGGCAAGGAGGTTGAAGCAAGCCAAGGACGAGGCTACCGAGGAGATCGA
GAAGTTCCGCCAGGAGCGCGAGCGCGCCTTCAAGGAGTTCGAGGCCAAGC
ACATGGGAAGTCGCGAGGGCGTGGCGGCCAAGATCGATGCGGATATCCGC
GTTAAGCTGGCCGACATGGACCGGGCCATCCAGACCCGCAAGGACCCGTT
CATCCTGGAGATCCTGCAGTACGTGTACAACATCTCGCCCGAGGTGCACA
AAAACTACAACCACAAGGCAAGCTTTCTAGACC
BO14748.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6213-PA | 354 | Vha13-RA | 1..351 | 17..367 | 1730 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha13-RB | 943 | CG6213-RB | 100..450 | 17..367 | 1740 | 99.7 | Plus |
Vha13-RA | 703 | CG6213-RA | 100..450 | 17..367 | 1740 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:33:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19643511..19643680 | 367..198 | 835 | 99.4 | Minus |
3R | 32079331 | 3R | 19643738..19643838 | 199..99 | 505 | 100 | Minus |
3R | 32079331 | 3R | 19644201..19644287 | 103..17 | 420 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:33:18 has no hits.
BO14748.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:35:15 Download gff for
BO14748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-PA | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:33:58 Download gff for
BO14748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6213-PA | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:08:43 Download gff for
BO14748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-RA | 100..455 | 17..372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:24 Download gff for
BO14748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-RA | 100..455 | 17..372 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:24 Download gff for
BO14748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19643506..19643678 | 200..372 | 98 | <- | Minus |
3R | 19643738..19643838 | 99..199 | 100 | <- | Minus |
3R | 19644206..19644287 | 17..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:08:43 Download gff for
BO14748.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15469228..15469400 | 200..372 | 98 | <- | Minus |
arm_3R | 15469460..15469560 | 99..199 | 100 | <- | Minus |
arm_3R | 15469928..15470009 | 17..98 | 100 | | Minus |
BO14748.3prime Sequence
383 bp (382 high quality bases) assembled on 2006-06-02
> BO14748.3prime
ATGGTCTAGAAAGCTTGCCTTGTGGTTGTAGTTTTTGTGCACCTCGGGCG
AGATGTTGTACACGTACTGCAGGATCTCCAGGATGAACGGGTCCTTGCGG
GTCTGGATGGCCCGGTCCATGTCGGCCAGCTTAACGCGGATATCCGCATC
GATCTTGGCCGCCACGCCCTCGCGACTTCCCATGTGCTTGGCCTCGAACT
CCTTGAAGGCGCGCTCGCGCTCCTGGCGGAACTTCTCGATCTCCTCGGTA
GCCTCGTCCTTGGCTTGCTTCAACCTCCTTGCCTTGCGTTTACGAGCCTC
GGCGACCTTCTCGGCTGCCTTTTTCTCGGCAGCGAGCAACTGCTGGATTC
CCTGCGTCTGGCTGGCCATGTCGACTGATAACT
BO14748.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6213-PA | 354 | Vha13-RA | 1..351 | 369..19 | 1730 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha13-RB | 943 | CG6213-RB | 100..450 | 369..19 | 1740 | 99.7 | Minus |
Vha13-RA | 703 | CG6213-RA | 100..450 | 369..19 | 1740 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19643511..19643680 | 19..188 | 835 | 99.4 | Plus |
3R | 32079331 | 3R | 19643738..19643838 | 187..287 | 505 | 100 | Plus |
3R | 32079331 | 3R | 19644201..19644287 | 283..369 | 420 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:21:57 has no hits.
BO14748.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:35:14 Download gff for
BO14748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-PA | 1..354 | 15..369 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:33:56 Download gff for
BO14748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6213-PA | 1..354 | 15..369 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:47:19 Download gff for
BO14748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-RA | 100..455 | 14..369 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:40:53 Download gff for
BO14748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-RA | 100..455 | 14..369 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:40:53 Download gff for
BO14748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19643506..19643678 | 14..186 | 98 | <- | Plus |
3R | 19643738..19643838 | 187..287 | 100 | <- | Plus |
3R | 19644206..19644287 | 288..369 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:47:19 Download gff for
BO14748.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15469228..15469400 | 14..186 | 98 | <- | Plus |
arm_3R | 15469460..15469560 | 187..287 | 100 | <- | Plus |
arm_3R | 15469928..15470009 | 288..369 | 100 | | Plus |
BO14748.complete Sequence
385 bp (385 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633235
> BO14748.complete
GAAGTTATCAGTCGACATGGCCAGCCAGACGCAGGGAATCCAGCAGTTGC
TCGCTGCCGAGAAAAAGGCAGCCGAGAAGGTCGCCGAGGCTCGTAAACGC
AAGGCAAGGAGGTTGAAGCAAGCCAAGGACGAGGCTACCGAGGAGATCGA
GAAGTTCCGCCAGGAGCGCGAGCGCGCCTTCAAGGAGTTCGAGGCCAAGC
ACATGGGAAGTCGCGAGGGCGTGGCGGCCAAGATCGATGCGGATATCCGC
GTTAAGCTGGCCGACATGGACCGGGCCATCCAGACCCGCAAGGACCCGTT
CATCCTGGAGATCCTGCAGTACGTGTACAACATCTCGCCCGAGGTGCACA
AAAACTACAACCACAAGGCAAGCTTTCTAGACCAT
BO14748.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha13-RB | 354 | CG6213-PB | 1..351 | 17..367 | 1740 | 99.7 | Plus |
Vha13-RA | 354 | CG6213-PA | 1..351 | 17..367 | 1740 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha13-RB | 943 | CG6213-RB | 100..450 | 17..367 | 1740 | 99.7 | Plus |
Vha13-RA | 703 | CG6213-RA | 100..450 | 17..367 | 1740 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19643511..19643680 | 367..198 | 835 | 99.4 | Minus |
3R | 32079331 | 3R | 19643738..19643838 | 199..99 | 505 | 100 | Minus |
3R | 32079331 | 3R | 19644201..19644287 | 103..17 | 420 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:55:54 has no hits.
BO14748.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:18 Download gff for
BO14748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-RA | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:55 Download gff for
BO14748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-RA | 126..481 | 17..372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:42 Download gff for
BO14748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-RA | 100..450 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:18 Download gff for
BO14748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-RA | 126..481 | 17..372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:11 Download gff for
BO14748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-RA | 100..450 | 17..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:11 Download gff for
BO14748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19643509..19643678 | 200..369 | 98 | <- | Minus |
3R | 19643738..19643838 | 99..199 | 100 | <- | Minus |
3R | 19644206..19644287 | 17..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:42 Download gff for
BO14748.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15469231..15469400 | 200..369 | 98 | <- | Minus |
arm_3R | 15469460..15469560 | 99..199 | 100 | <- | Minus |
arm_3R | 15469928..15470009 | 17..98 | 100 | | Minus |
BO14748.pep Sequence
Translation from 16 to 385
> BO14748.pep
MASQTQGIQQLLAAEKKAAEKVAEARKRKARRLKQAKDEATEEIEKFRQE
RERAFKEFEAKHMGSREGVAAKIDADIRVKLADMDRAIQTRKDPFILEIL
QYVYNISPEVHKNYNHKASFLDH
BO14748.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha13-PB | 117 | CG6213-PB | 1..117 | 1..117 | 581 | 100 | Plus |
Vha13-PA | 117 | CG6213-PA | 1..117 | 1..117 | 581 | 100 | Plus |