Clone BO14752 Report

Search the DGRC for BO14752

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:147
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG4774-RA
Protein status:BO14752.pep: validated full length
Sequenced Size:1000

Clone Sequence Records

BO14752.5prime Sequence

753 bp (690 high quality bases) assembled on 2006-06-02

> BO14752.5prime
GAAGTTATCAGTCGACATGCTGCCCGCCATCATTTTCCGGCAGGTGCAGC
GCCCACTGCACCATGGAGCCGCCACATTGGAGCACGTTTTGGGAGTCGGC
GGAAGCAGCTTCGTGAACTGCCTGAATCGCTATGCGGCCGCCACGGGATT
CATTCGGATCTCGTTTCTGGACATTAAGCGGCGCAGGAACTACGAGTTAG
CCAGACTTCGCCTCTATGCCGATGAGAAGAAGCAGTCGCTCCATTTGCGC
ACCTTGCAGGGACGCCATCTCCTGCAGGGTGTCATCGAAAGGAAGAACTT
CCTGGTGGATGACATCCGGGAGGCCAGGCACAAAGTCCAGGAGCGGGTGC
GCGAGAAGATCGACGAGATACGCGAAGAGCGAGAGAACATTATGACCATA
CCCAACATGCTGACCATCAGTCGTGCCGTCCTCTCACCCTACATCGGATA
TGTTATAGTCCAGGGCGATTTCACCCTGGGCATGAGCCTTCTAGCGTTCG
CCGGCATCACAGATCTGTTGGATGGACAGATCGCACGACGGTGGCCTTCG
CAGGCGAGCAAGTTCGGTTCCTTCCTGGACCCCATGGCTGATAAGTTGCT
GATGGGCTCGCTGGTCATCTCGCTGTGCTACACGGACCTGCTGCCCATGT
GGCTCATGGGCATCGTGGTGTTCCGGGATGTCTTTCCTTCTAGGAGCTGG
ATTTGTTATACGCTACATAAGTCTGCCCACCGCCCAAAACCTTTTCGCGC
TAC

BO14752.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4774-PB 969 CG4774-RB 1..670 17..686 3350 100 Plus
CG4774-PA 969 CG4774-RA 1..670 17..686 3350 100 Plus
CG4774-PC 969 CG4774-RC 1..670 17..686 3350 100 Plus
CG4774-PB 969 CG4774-RB 670..710 687..727 205 100 Plus
CG4774-PA 969 CG4774-RA 670..710 687..727 205 100 Plus
CG4774-PC 969 CG4774-RC 670..710 687..727 205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
CLS-RD 1289 CG4774-RD 172..906 17..753 3620 99.6 Plus
CLS-RC 1373 CG4774-RC 256..990 17..753 3620 99.6 Plus
CLS-RA 1337 CG4774-RA 220..954 17..753 3620 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25686315..25686815 517..17 2505 100 Minus
3R 32079331 3R 25685775..25685984 727..517 1005 99.5 Minus
Blast to na_te.dros performed on 2015-02-13 09:10:11 has no hits.

BO14752.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:35:19 Download gff for BO14752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4774-PA 1..735 17..753 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:34:03 Download gff for BO14752.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4774-PC 1..735 17..753 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:28:03 Download gff for BO14752.5prime
Subject Subject Range Query Range Percent Splice Strand
CLS-RA 220..954 17..753 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:02:22 Download gff for BO14752.5prime
Subject Subject Range Query Range Percent Splice Strand
CLS-RA 220..954 17..753 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:02:22 Download gff for BO14752.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25685685..25685702 736..753 100 <- Minus
3R 25685768..25685983 518..735 98 <- Minus
3R 25686315..25686815 17..517 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:28:03 Download gff for BO14752.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21511407..21511424 736..753 100 <- Minus
arm_3R 21511490..21511705 518..735 98 <- Minus
arm_3R 21512037..21512537 17..517 100   Minus

BO14752.complete Sequence

1000 bp (1000 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633237

> BO14752.complete
GAAGTTATCAGTCGACATGCTGCCCGCCATCATTTTCCGGCAGGTGCAGC
GCCCACTGCACCATGGAGCCGCCACATTGGAGCACGTTTTGGGAGTCGGC
GGAAGCAGCTTCGTGAACTGCCTGAATCGCTATGCGGCCGCCACGGGATT
CATTCGGATCTCGTTTCTGGACATTAAGCGGCGCAGGAACTACGAGTTAG
CCAGACTTCGCCTCTATGCCGATGAGAAGAAGCAGTCGCTCCATTTGCGC
ACCTTGCAGGGACGCCATCTCCTGCAGGGTGTCATCGAAAGGAAGAACTT
CCTGGTGGATGACATCCGGGAGGCCAGGCACAAAGTCCAGGAGCGGGTGC
GCGAGAAGATCGACGAGATACGCGAAGAGCGAGAGAACATTATGACCATA
CCCAACATGCTGACCATCAGTCGTGCCGTCCTCTCACCCTACATCGGATA
TGTTATAGTCCAGGGCGATTTCACCCTGGGCATGAGCCTTCTAGCGTTCG
CCGGCATCACAGATCTGTTGGATGGACAGATCGCACGACGGTGGCCTTCG
CAGGCGAGCAAGTTCGGTTCCTTCCTGGACCCCATGGCTGATAAGTTGCT
GATGGGCTCGCTGGTCATCTCGCTGTGCTACACGGACCTGCTGCCCATGT
GGCTCATGGGCATCGTGGTGTTCCGGGATGTCTTTCTTCTAGGAGCTGGA
TTTGTTATACGCTACATAAGTCTGCCACCGCCGAAAACCTTTTCGCGCTA
CTTCGACGCCACCCATGTTACTGCCCAACTGGAGCCCACGCTGCTCAGCA
AGATCAACACGGGCGTCCAGTTGGCCACCATTGGACTGAGCCTGGGAGCT
CCCATTTGGAACTATTTGGATCACCCAGCTTTGCAGGGACTTTGGTATCT
GACTGGCCTGACTACGGCTGCCACTGCCCTCAGCTACGTCATGAATCGGC
ATAATACCTTTAAGATTATCCAAAAAAAGACGGCAAGCTTTCTAGACCAT

BO14752.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
CLS-RD 969 CG4774-PD 1..966 17..982 4830 100 Plus
CLS-RC 969 CG4774-PC 1..966 17..982 4830 100 Plus
CLS-RA 969 CG4774-PA 1..966 17..982 4830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
CLS-RD 1289 CG4774-RD 172..1137 17..982 4830 100 Plus
CLS-RC 1373 CG4774-RC 256..1221 17..982 4830 100 Plus
CLS-RA 1337 CG4774-RA 220..1185 17..982 4830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25686315..25686815 517..17 2505 100 Minus
3R 32079331 3R 25685768..25685984 733..517 1085 100 Minus
3R 32079331 3R 25685567..25685703 869..733 685 100 Minus
3R 32079331 3R 25685388..25685501 982..869 570 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:00:45 has no hits.

BO14752.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:40 Download gff for BO14752.complete
Subject Subject Range Query Range Percent Splice Strand
CG4774-RC 1..969 17..983 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:30 Download gff for BO14752.complete
Subject Subject Range Query Range Percent Splice Strand
CG4774-RC 239..1204 17..982 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:46 Download gff for BO14752.complete
Subject Subject Range Query Range Percent Splice Strand
CLS-RA 220..1174 17..971 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:40 Download gff for BO14752.complete
Subject Subject Range Query Range Percent Splice Strand
CG4774-RC 239..1204 17..982 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:29 Download gff for BO14752.complete
Subject Subject Range Query Range Percent Splice Strand
CLS-RA 220..1174 17..971 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:29 Download gff for BO14752.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25685399..25685500 870..971 100 <- Minus
3R 25685567..25685702 734..869 100 <- Minus
3R 25685768..25685983 518..733 100 <- Minus
3R 25686315..25686815 17..517 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:46 Download gff for BO14752.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21511121..21511222 870..971 100 <- Minus
arm_3R 21511289..21511424 734..869 100 <- Minus
arm_3R 21511490..21511705 518..733 100 <- Minus
arm_3R 21512037..21512537 17..517 100   Minus

BO14752.pep Sequence

Translation from 16 to 1000

> BO14752.pep
MLPAIIFRQVQRPLHHGAATLEHVLGVGGSSFVNCLNRYAAATGFIRISF
LDIKRRRNYELARLRLYADEKKQSLHLRTLQGRHLLQGVIERKNFLVDDI
REARHKVQERVREKIDEIREERENIMTIPNMLTISRAVLSPYIGYVIVQG
DFTLGMSLLAFAGITDLLDGQIARRWPSQASKFGSFLDPMADKLLMGSLV
ISLCYTDLLPMWLMGIVVFRDVFLLGAGFVIRYISLPPPKTFSRYFDATH
VTAQLEPTLLSKINTGVQLATIGLSLGAPIWNYLDHPALQGLWYLTGLTT
AATALSYVMNRHNTFKIIQKKTASFLDH

BO14752.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
CLS-PD 322 CG4774-PD 1..322 1..322 1648 100 Plus
CLS-PC 322 CG4774-PC 1..322 1..322 1648 100 Plus
CLS-PA 322 CG4774-PA 1..322 1..322 1648 100 Plus
CLS-PB 322 CG4774-PB 1..322 1..322 1648 100 Plus