Clone Sequence Records
BO14752.5prime Sequence
753 bp (690 high quality bases) assembled on 2006-06-02
> BO14752.5prime
GAAGTTATCAGTCGACATGCTGCCCGCCATCATTTTCCGGCAGGTGCAGC
GCCCACTGCACCATGGAGCCGCCACATTGGAGCACGTTTTGGGAGTCGGC
GGAAGCAGCTTCGTGAACTGCCTGAATCGCTATGCGGCCGCCACGGGATT
CATTCGGATCTCGTTTCTGGACATTAAGCGGCGCAGGAACTACGAGTTAG
CCAGACTTCGCCTCTATGCCGATGAGAAGAAGCAGTCGCTCCATTTGCGC
ACCTTGCAGGGACGCCATCTCCTGCAGGGTGTCATCGAAAGGAAGAACTT
CCTGGTGGATGACATCCGGGAGGCCAGGCACAAAGTCCAGGAGCGGGTGC
GCGAGAAGATCGACGAGATACGCGAAGAGCGAGAGAACATTATGACCATA
CCCAACATGCTGACCATCAGTCGTGCCGTCCTCTCACCCTACATCGGATA
TGTTATAGTCCAGGGCGATTTCACCCTGGGCATGAGCCTTCTAGCGTTCG
CCGGCATCACAGATCTGTTGGATGGACAGATCGCACGACGGTGGCCTTCG
CAGGCGAGCAAGTTCGGTTCCTTCCTGGACCCCATGGCTGATAAGTTGCT
GATGGGCTCGCTGGTCATCTCGCTGTGCTACACGGACCTGCTGCCCATGT
GGCTCATGGGCATCGTGGTGTTCCGGGATGTCTTTCCTTCTAGGAGCTGG
ATTTGTTATACGCTACATAAGTCTGCCCACCGCCCAAAACCTTTTCGCGC
TAC
BO14752.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4774-PB | 969 | CG4774-RB | 1..670 | 17..686 | 3350 | 100 | Plus |
CG4774-PA | 969 | CG4774-RA | 1..670 | 17..686 | 3350 | 100 | Plus |
CG4774-PC | 969 | CG4774-RC | 1..670 | 17..686 | 3350 | 100 | Plus |
CG4774-PB | 969 | CG4774-RB | 670..710 | 687..727 | 205 | 100 | Plus |
CG4774-PA | 969 | CG4774-RA | 670..710 | 687..727 | 205 | 100 | Plus |
CG4774-PC | 969 | CG4774-RC | 670..710 | 687..727 | 205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:10:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CLS-RD | 1289 | CG4774-RD | 172..906 | 17..753 | 3620 | 99.6 | Plus |
CLS-RC | 1373 | CG4774-RC | 256..990 | 17..753 | 3620 | 99.6 | Plus |
CLS-RA | 1337 | CG4774-RA | 220..954 | 17..753 | 3620 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:10:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25686315..25686815 | 517..17 | 2505 | 100 | Minus |
3R | 32079331 | 3R | 25685775..25685984 | 727..517 | 1005 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:10:11 has no hits.
BO14752.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:35:19 Download gff for
BO14752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4774-PA | 1..735 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:34:03 Download gff for
BO14752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4774-PC | 1..735 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:28:03 Download gff for
BO14752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CLS-RA | 220..954 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:02:22 Download gff for
BO14752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CLS-RA | 220..954 | 17..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:02:22 Download gff for
BO14752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25685685..25685702 | 736..753 | 100 | <- | Minus |
3R | 25685768..25685983 | 518..735 | 98 | <- | Minus |
3R | 25686315..25686815 | 17..517 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:28:03 Download gff for
BO14752.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21511407..21511424 | 736..753 | 100 | <- | Minus |
arm_3R | 21511490..21511705 | 518..735 | 98 | <- | Minus |
arm_3R | 21512037..21512537 | 17..517 | 100 | | Minus |
BO14752.complete Sequence
1000 bp (1000 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633237
> BO14752.complete
GAAGTTATCAGTCGACATGCTGCCCGCCATCATTTTCCGGCAGGTGCAGC
GCCCACTGCACCATGGAGCCGCCACATTGGAGCACGTTTTGGGAGTCGGC
GGAAGCAGCTTCGTGAACTGCCTGAATCGCTATGCGGCCGCCACGGGATT
CATTCGGATCTCGTTTCTGGACATTAAGCGGCGCAGGAACTACGAGTTAG
CCAGACTTCGCCTCTATGCCGATGAGAAGAAGCAGTCGCTCCATTTGCGC
ACCTTGCAGGGACGCCATCTCCTGCAGGGTGTCATCGAAAGGAAGAACTT
CCTGGTGGATGACATCCGGGAGGCCAGGCACAAAGTCCAGGAGCGGGTGC
GCGAGAAGATCGACGAGATACGCGAAGAGCGAGAGAACATTATGACCATA
CCCAACATGCTGACCATCAGTCGTGCCGTCCTCTCACCCTACATCGGATA
TGTTATAGTCCAGGGCGATTTCACCCTGGGCATGAGCCTTCTAGCGTTCG
CCGGCATCACAGATCTGTTGGATGGACAGATCGCACGACGGTGGCCTTCG
CAGGCGAGCAAGTTCGGTTCCTTCCTGGACCCCATGGCTGATAAGTTGCT
GATGGGCTCGCTGGTCATCTCGCTGTGCTACACGGACCTGCTGCCCATGT
GGCTCATGGGCATCGTGGTGTTCCGGGATGTCTTTCTTCTAGGAGCTGGA
TTTGTTATACGCTACATAAGTCTGCCACCGCCGAAAACCTTTTCGCGCTA
CTTCGACGCCACCCATGTTACTGCCCAACTGGAGCCCACGCTGCTCAGCA
AGATCAACACGGGCGTCCAGTTGGCCACCATTGGACTGAGCCTGGGAGCT
CCCATTTGGAACTATTTGGATCACCCAGCTTTGCAGGGACTTTGGTATCT
GACTGGCCTGACTACGGCTGCCACTGCCCTCAGCTACGTCATGAATCGGC
ATAATACCTTTAAGATTATCCAAAAAAAGACGGCAAGCTTTCTAGACCAT
BO14752.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CLS-RD | 969 | CG4774-PD | 1..966 | 17..982 | 4830 | 100 | Plus |
CLS-RC | 969 | CG4774-PC | 1..966 | 17..982 | 4830 | 100 | Plus |
CLS-RA | 969 | CG4774-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CLS-RD | 1289 | CG4774-RD | 172..1137 | 17..982 | 4830 | 100 | Plus |
CLS-RC | 1373 | CG4774-RC | 256..1221 | 17..982 | 4830 | 100 | Plus |
CLS-RA | 1337 | CG4774-RA | 220..1185 | 17..982 | 4830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:00:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25686315..25686815 | 517..17 | 2505 | 100 | Minus |
3R | 32079331 | 3R | 25685768..25685984 | 733..517 | 1085 | 100 | Minus |
3R | 32079331 | 3R | 25685567..25685703 | 869..733 | 685 | 100 | Minus |
3R | 32079331 | 3R | 25685388..25685501 | 982..869 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:00:45 has no hits.
BO14752.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:40 Download gff for
BO14752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4774-RC | 1..969 | 17..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:30 Download gff for
BO14752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4774-RC | 239..1204 | 17..982 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:46 Download gff for
BO14752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CLS-RA | 220..1174 | 17..971 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:40 Download gff for
BO14752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4774-RC | 239..1204 | 17..982 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:29 Download gff for
BO14752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CLS-RA | 220..1174 | 17..971 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:29 Download gff for
BO14752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25685399..25685500 | 870..971 | 100 | <- | Minus |
3R | 25685567..25685702 | 734..869 | 100 | <- | Minus |
3R | 25685768..25685983 | 518..733 | 100 | <- | Minus |
3R | 25686315..25686815 | 17..517 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:46 Download gff for
BO14752.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21511121..21511222 | 870..971 | 100 | <- | Minus |
arm_3R | 21511289..21511424 | 734..869 | 100 | <- | Minus |
arm_3R | 21511490..21511705 | 518..733 | 100 | <- | Minus |
arm_3R | 21512037..21512537 | 17..517 | 100 | | Minus |
BO14752.pep Sequence
Translation from 16 to 1000
> BO14752.pep
MLPAIIFRQVQRPLHHGAATLEHVLGVGGSSFVNCLNRYAAATGFIRISF
LDIKRRRNYELARLRLYADEKKQSLHLRTLQGRHLLQGVIERKNFLVDDI
REARHKVQERVREKIDEIREERENIMTIPNMLTISRAVLSPYIGYVIVQG
DFTLGMSLLAFAGITDLLDGQIARRWPSQASKFGSFLDPMADKLLMGSLV
ISLCYTDLLPMWLMGIVVFRDVFLLGAGFVIRYISLPPPKTFSRYFDATH
VTAQLEPTLLSKINTGVQLATIGLSLGAPIWNYLDHPALQGLWYLTGLTT
AATALSYVMNRHNTFKIIQKKTASFLDH
BO14752.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CLS-PD | 322 | CG4774-PD | 1..322 | 1..322 | 1648 | 100 | Plus |
CLS-PC | 322 | CG4774-PC | 1..322 | 1..322 | 1648 | 100 | Plus |
CLS-PA | 322 | CG4774-PA | 1..322 | 1..322 | 1648 | 100 | Plus |
CLS-PB | 322 | CG4774-PB | 1..322 | 1..322 | 1648 | 100 | Plus |