Clone Sequence Records
BO14759.3prime Sequence
778 bp (696 high quality bases) assembled on 2006-06-02
> BO14759.3prime
ATGGTCTAGAAAGCTTGCGGAGTCCACCAGCACATGCCAACGCGCCAGCA
TCTCTCCCTTGGGCATCTCGCACACGTCTGCCCAATGGGCCACTTCCTCT
GATCCGGACGAGTTCAGACCCAGGCTGAACCAGCCGACCATCTCGTTTTT
CTTCATGTGCCGCTTGGCGTACACAGAGATCATCAGAGTAACATCGTTGA
GCTGGAACAGGGCCACCTGAAAGGCGAATGTCTCCTTAAAAAGCGGGTTA
GGCTGACCCCTGCGGATTGACGTTTTGGCCCGGGAGATCTCTTGTCCGAT
GCTGCTGACCATAACCATTTTAACGTACGTGTCGGGCGCCTTGTTCAGCG
ACAAGCTGCGGAACTGGCTTCCCTTGATGATCTCGACGCTCAGACGCCCA
GTGACCCCGTTGTAGCTCAAACCCAGCAGCAACTCGGAGACGCCCCCGTG
CTGCATGGACGAGGTGGAGCCCGCGCTTTCTGACCGAGCCAGGCTTAACA
GATCGCTAGTAGAACCCAGGCCCGACGAGGTGTTTCGTGGCTCCAGCGGC
AGCCATAGGTTTGTTTCCAGTTCAAGGTCAACAGTGGCGAAGCTCACATA
CGCCTCCCCAATCAGGCGTTCCTTGCGCAGCCGCTCGCAGCCGTAAAGCC
GCACACGCAGCCCCATGTTGTTCACATCTTCTGGGTTGACGCGATGGAGA
AGAAAGCTCTCCATATACTGTGGATTTTCGCCGCTACGGATCTTGGTTTT
GAGCTTCTGCTTTTTGCTTGGCAGCATC
BO14759.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9778-PA | 1761 | CG9778-RA | 999..1758 | 778..19 | 3800 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt14-RD | 2736 | CG9778-RD | 1441..2200 | 778..19 | 3800 | 100 | Minus |
| Syt14-RC | 3871 | CG9778-RC | 1441..2200 | 778..19 | 3800 | 100 | Minus |
| Syt14-RA | 2736 | CG9778-RA | 1441..2200 | 778..19 | 3800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4316126..4316885 | 19..778 | 3800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:59:05 has no hits.
BO14759.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:35:23 Download gff for
BO14759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9778-PA | 999..1761 | 16..778 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:34:09 Download gff for
BO14759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9778-PA | 999..1761 | 16..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:47:06 Download gff for
BO14759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt14-RA | 1441..2200 | 19..778 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:30:28 Download gff for
BO14759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt14-RA | 1441..2200 | 19..778 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:30:28 Download gff for
BO14759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4316126..4316885 | 19..778 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:47:06 Download gff for
BO14759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 141848..142607 | 19..778 | 100 | | Plus |
BO14759.complete Sequence
1792 bp (1792 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ633239
> BO14759.complete
GAAGTTATCAGTCGACATGATTGTTACCTCCGCTTCTGGACTGGATAGCA
CTCCGACGCTCGGCACCATCGAGGTGACCACTTTGCTGGGCGCCTTTTTC
GGCGTCCTCGTTCTACTGCTCCTGTTGTTTCTTTTCATCAGTCGCAAGTG
CTGTTTTCACTACCGCCATGCCATCAACTGCTGCGACGAGCGCCACCTTG
CAGTCAAGTGTGTGCAGAAGATCACCCGCAAAAGGCGTTACGAGAACACC
AGCTCCGACTCGGAGGAAGACATCTTGAGGCGCCTGCGGTGGCATCAACA
GCACCAACTGGGCGAGAAGCCTGGCGGATACGGGCTGGGAATCAGCCAGG
CTAATCCGCTGACGGCGCAGAGCTTCAACTACCACCAAGCAGGCGCAAGT
GCCGACCTGCAGCGTGTGACGGTGTCGCGTGACCCCTTAGCCATCGCCGA
GCGTGGCAAGGTTGGAATCCCGTCATCGCACAGTGAGTGCAGCTCGAACG
ATTCCATGGAGGTCTCCGTGGACAGTCACACAGGCGTCCTGACGGGTCTG
AGCAAAGCCACAACCACAGTTCCCCACCCGGCGACAGCCTTCCGCAATCC
GTGTGGAGAACACCGGGCCAAGACCCAGGCACTGAGGTACCAGCACCGGG
TCAACGTGGCTGCTCCGCCAAAGCTGGACAAGGAACGGGACAACGTGCTG
GTGGTGCCCATGGTCAATGCCTACAGCATTAACAACAACAACAACTCGAT
AACAACCAGCAATAACCATCCCAGCAGCAACAACAACGATGACGAACCCC
TATTTGACACCAGCGATTTGCGCTCGATCAAGTCGGATGACCTACTGGTT
GGTGTGGACCAGAAGGAGCCGGCCGTGCAGAGGGGTCCCATCGAGCTGGA
GCTGTCGCTGCTGTACGACGCCCCAATGCGGAAAATGACGGTGCACGTGA
TGCAGGCAAAAAATCTTCCGCCCCTGGGTAGTGGGCAGACCACCCACACG
CAGGTCCGGATGCTGATGCTGCCAAGCAAAAAGCAGAAGCTCAAAACCAA
GATCCGTAGCGGCGAAAATCCACAGTATATGGAGAGCTTTCTTCTCCATC
GCGTCAACCCAGAAGATGTGAACAACATGGGGCTGCGTGTGCGGCTTTAC
GGCTGCGAGCGGCTGCGCAAGGAACGCCTGATTGGGGAGGCGTATGTGAG
CTTCGCCACTGTTGACCTTGAACTGGAAACAAACCTATGGCTGCCGCTGG
AGCCACGAAACACCTCGTCGGGCCTGGGTTCTACTAGCGATCTGTTAAGC
CTGGCTCGGTCAGAAAGCGCGGGCTCCACCTCGTCCATGCAGCACGGGGG
CGTCTCCGAGTTGCTGCTGGGTTTGAGCTACAACGGGGTCACTGGGCGTC
TGAGCGTCGAGATCATCAAGGGAAGCCAGTTCCGCAGCTTGTCGCTGAAC
AAGGCGCCCGACACGTACGTTAAAATGGTTATGGTCAGCAGCATCGGACA
AGAGATCTCCCGGGCCAAAACGTCAATCCGCAGGGGTCAGCCTAACCCGC
TTTTTAAGGAGACATTCGCCTTTCAGGTGGCCCTGTTCCAGCTCAACGAT
GTTACTCTGATGATCTCTGTGTACGCCAAGCGGCACATGAAGAAAAACGA
GATGGTCGGCTGGTTCAGCCTGGGTCTGAACTCGTCCGGATCAGAGGAAG
TGGCCCATTGGGCAGACGTGTGCGAGATGCCCAAGGGAGAGATGCTGGCG
CGTTGGCATGTGCTGGTGGACTCCGCAAGCTTTCTAGACCAT
BO14759.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt14-RD | 1947 | CG9778-PD | 1..1758 | 17..1774 | 8790 | 100 | Plus |
| Syt14-RC | 1761 | CG9778-PC | 1..1758 | 17..1774 | 8790 | 100 | Plus |
| Syt14-RA | 1761 | CG9778-PA | 1..1758 | 17..1774 | 8790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt14-RD | 2736 | CG9778-RD | 443..2200 | 17..1774 | 8790 | 100 | Plus |
| Syt14-RC | 3871 | CG9778-RC | 443..2200 | 17..1774 | 8790 | 100 | Plus |
| Syt14-RA | 2736 | CG9778-RA | 443..2200 | 17..1774 | 8790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4316126..4317106 | 1774..794 | 4905 | 100 | Minus |
| 3R | 32079331 | 3R | 4317956..4318288 | 557..225 | 1665 | 100 | Minus |
| 3R | 32079331 | 3R | 4317653..4317891 | 794..556 | 1195 | 100 | Minus |
| 3R | 32079331 | 3R | 4318348..4318510 | 224..62 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 4318581..4318627 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:07:51 has no hits.
BO14759.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:51 Download gff for
BO14759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9778-RA | 1..1761 | 17..1777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:11:22 Download gff for
BO14759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9778-RA | 433..2200 | 7..1774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:20 Download gff for
BO14759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt14-RA | 443..2200 | 17..1776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:51 Download gff for
BO14759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9778-RA | 433..2200 | 7..1774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:47 Download gff for
BO14759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt14-RA | 443..2200 | 17..1776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:47 Download gff for
BO14759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4316123..4317106 | 794..1776 | 99 | <- | Minus |
| 3R | 4317654..4317889 | 558..793 | 100 | <- | Minus |
| 3R | 4317956..4318288 | 225..557 | 100 | <- | Minus |
| 3R | 4318348..4318509 | 63..224 | 100 | <- | Minus |
| 3R | 4318582..4318627 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:20 Download gff for
BO14759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 141845..142828 | 794..1776 | 99 | <- | Minus |
| arm_3R | 143376..143611 | 558..793 | 100 | <- | Minus |
| arm_3R | 143678..144010 | 225..557 | 100 | <- | Minus |
| arm_3R | 144070..144231 | 63..224 | 100 | <- | Minus |
| arm_3R | 144304..144349 | 17..62 | 100 | | Minus |
BO14759.pep Sequence
Translation from 16 to 1792
> BO14759.pep
MIVTSASGLDSTPTLGTIEVTTLLGAFFGVLVLLLLLFLFISRKCCFHYR
HAINCCDERHLAVKCVQKITRKRRYENTSSDSEEDILRRLRWHQQHQLGE
KPGGYGLGISQANPLTAQSFNYHQAGASADLQRVTVSRDPLAIAERGKVG
IPSSHSECSSNDSMEVSVDSHTGVLTGLSKATTTVPHPATAFRNPCGEHR
AKTQALRYQHRVNVAAPPKLDKERDNVLVVPMVNAYSINNNNNSITTSNN
HPSSNNNDDEPLFDTSDLRSIKSDDLLVGVDQKEPAVQRGPIELELSLLY
DAPMRKMTVHVMQAKNLPPLGSGQTTHTQVRMLMLPSKKQKLKTKIRSGE
NPQYMESFLLHRVNPEDVNNMGLRVRLYGCERLRKERLIGEAYVSFATVD
LELETNLWLPLEPRNTSSGLGSTSDLLSLARSESAGSTSSMQHGGVSELL
LGLSYNGVTGRLSVEIIKGSQFRSLSLNKAPDTYVKMVMVSSIGQEISRA
KTSIRRGQPNPLFKETFAFQVALFQLNDVTLMISVYAKRHMKKNEMVGWF
SLGLNSSGSEEVAHWADVCEMPKGEMLARWHVLVDSASFLDH
BO14759.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt14-PD | 648 | CG9778-PD | 1..586 | 1..586 | 3018 | 100 | Plus |
| Syt14-PC | 586 | CG9778-PC | 1..586 | 1..586 | 3018 | 100 | Plus |
| Syt14-PA | 586 | CG9778-PA | 1..586 | 1..586 | 3018 | 100 | Plus |
| Syt1-PE | 472 | CG3139-PE | 183..460 | 281..585 | 308 | 27.5 | Plus |
| Syt1-PI | 472 | CG3139-PI | 181..460 | 281..585 | 306 | 27.1 | Plus |
